At4g38160 SYNGENTA 14891
Genomic Sequence (from TAIR)
AGGAAGGCACCATcgttatctgccgctgattcgaaaagttagggttttgcagattttgacggagagagaagaaggggagggtttagtcacgcgagaagga ttgagggatataacagtcatttactctacagggggtataagaaagaaagaaggtcctcactcctccgtgtggataagcttctcactttcagttcaattgg atagccggaaaggctctcctccaaggtaaattcctctctacttccttgttaaagctcgaatcatctc◄taag◄ttaagcaaaattggtgtgttgtagtgg cgtttatATGGAGGTGACAAATACGAGCAGCATCATGTGGTTCTTCAGGGACAAAGGTTT►CGATG►ATCCGAGTATCGACAAGATGTTGAGAAAATGCA AACAGTTGGAAAAGGCTCAAAGCGATGTGGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAGAGAAAACTCCCTTACATCGTCTC TCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCCGATGGTCGAGTGCCTCTCCAGTCTTGGAAGGAATCCTCGGGAAGTTGCTTCC GCCATTACCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCTTGCTTTCTTTCAAGCGTTAGGTGTGCCTGAGACTCAAC TTGGCAAAATGATACTTTTTAACCCAAGGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGCTAGCCTTGGCCTTGATCA AGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCTTATGGGGTACAGTGTTGATAAAAGGTTACGGCCTACCACTGAATTCTTGAAATCATCC GTTGGCCTGAGTGAGGATGGCATTAAGTCGGTGGTCATGAATTTCCCACAACTTTTGTGCAGAGACGTTAACAAGATTCTCAAACCAAATTATGATTATT TGAAGGAGTGTGGGTTTGGAGATTCCCAGATAGCAACCATGGTCACTGGTTATCCCCAAATCTTGATTAAGAGTGTTAAGAATTCACTACAGCCTAGGAT CAGATTCCTCGTCCAGGTGATGGGAAGAGGCATGGATGAAGTGGCTTCTTATCCTGAATTCTTTCACCATGGATTGAAGAAGAAGGTCGAATCGAGGTTT AAACTTGTCAAAAAGAACAACATTGACTGCAGCCTTAGAGAAATGCTGGACTGTAACACAAAGAAATTCCATGAGAAGTTTGGCTTTTCGGAGGTAACTG CAAGCTTCTAGcttttatatctctctctagttttttccttcatcaggctctctctgtaagctgttttcagcttgtgcaccaatttctagcacgagctttt ccttgagtgattgtgatatcaatagagtgttttcttccagatatcatcgattattcactatgcattcgtttatcatggattctacacttccttttgaaaa ttacctaattatgatagaaccaccaccatggcccgatcaagtgcatatccatagagtggttcctgtgttttcaggtattcaactgcaatcaaaatgggat gtatatgttgttggataagtcagtgtcattattggcttgtgattattgcagcaaccgacaagcaaaagaagtgtctgcttagcctaactgcagaacagaa tatgcagcaatgcagtctagctgcttgtcggaagtatgggtgggtaaaaagcccctagtcattccacaaatatggaggcccctagtcaaaggtcacattt gatgacaaagagatggttgatcgttctctgcctatatagtatgtacctgtcatataaaaatgaaaccccctctgctctctcttttggatgagatcaaccg tattttaaaccggccaaacttgaaagtttttttttgcttcaaatgctctttcaagtagagtcccttttgttattcacgttttgtagctattctattctct ctccttggactggtgtttttgttcttcggtttttccgatcaaagttgaatcaagaagaagttcgctgtttcttgtggttgcttgttgggcttctgtgcct ttttgattttttctattttgggcctgtgtgccatgttttcggcatttctgctttgttgggcctacgtgccttttcgagccttgtagttttctttgtttaa agcactcaataattgtttgttgacggaccaaaaaactcaaataggcccgacttaatttattattttaagggcccaaaattaaggactaggcctgcctacc agtcccaactcgcaacattggttatggtaaactaacagcttgccgttttatgttataaaaacggcaggagagtgtaggcttagatagacaaacccgtcac cgagttcggttggatccaacagcaaaccttaaagcgtactccgtccggtcgcggaagccattgattcagttacagttacaagtttagggttttaaagcca tatc
Border_1 (14891_RB)
AATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGCTTGAGATGATTCGAGCTTTAACAAGGAAGTAGAGAGGA
ATTTACCTTGGAGGAGAGCCTTTCCGGCTATCCAATTGAACTGAAAGTGAGAAGCTTATCCACACGGAGGAGTGAGGACCTTCTTTCTTTCTTATACCCC
CTGTAGAGTAAATGACTG:TTA:TAT:CCCTC:AAT:CCTTCT:CGCGTGACT:AAACCCTCCCCTTCTTCTCTCTCCGTCAAAATCTGCAAAACCC:TA
ACTTTTCGAAATCAAGCGGGCAGAATAAACCGATGGTGCCTTCCTCCCAAAGCCCGTCGGTTTTTTGCAAGGGCAAGAATGGCCGAAAGCCAAGAATTCG
TGGTTACGGACGGCCCGGTCGGATGGTCCCGCAACAACGGCTTTCTCTCAACGGGCGACAATGGTCAAGTAGACGAGCAGCAGAACCCTCCAGAGCCCTT
ACCCAACAGACCCTTGCGAGGGGAGAGATCTTCCAACTCTCACAGAGAACCACCCGGNTAGACAAGCCCCACAACCTTGGAAAGAGTGATACTACTCTGC
TGACGATGGCTTCCTCGAACAGGTCAAGCTTGGAGTCAATCAAGGAATCACGGGNAAACCCCCCAAACCGGGAACAATACCCCGCAGGGAGCCCTTACCC
GCCGCCTGAGGGATTTCCGATGAGAATCTTCAAGNAANANGAAG
| Start of BLAST Alignment: | NT < 34 / Intron 1 of 2 |
| First 15 bp Perfect Match: | NT < 38 / Intron 1 of 2 |
BLAST Details: Query Sequence: 14891_RB Length: (736 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F20D10 67215 1336 2.6e-106 2 F20D10 67215 Length = 147,215 Minus Strand HSPs: Score = 1336 (206.5 bits), Expect = 2.6e-106, Sum P(2) = 2.6e-106 Identities = 286/296 (96%), Positives = 286/296 (96%), Strand = Minus / Plus Query: 356 AAAACCGACGGGCTTTGGGAGGAAGGCACCATCGGTTTATTCTGCCCGCTTGATTTCGAA 297 |||| |||||| |||||| ||||||||||||||| |||| ||||| ||| |||| |||| Sbjct: 90108 AAAAACGACGG-CTTTGG-AGGAAGGCACCATCG--TTAT-CTGCC-GCT-GATT-CGAA 90159 Query: 296 AAGTTAGGGTTTTGCAGATTTTGACGGAGAGAGAAGAAGGGGAGGGTTTAGTCACGCGAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90160 AAGTTAGGGTTTTGCAGATTTTGACGGAGAGAGAAGAAGGGGAGGGTTTAGTCACGCGAG 90219 Query: 236 AAGGATTGAGGGATATAACAGTCATTTACTCTACAGGGGGTATAAGAAAGAAAGAAGGTC 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90220 AAGGATTGAGGGATATAACAGTCATTTACTCTACAGGGGGTATAAGAAAGAAAGAAGGTC 90279 Query: 176 CTCACTCCTCCGTGTGGATAAGCTTCTCACTTTCAGTTCAATTGGATAGCCGGAAAGGCT 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90280 CTCACTCCTCCGTGTGGATAAGCTTCTCACTTTCAGTTCAATTGGATAGCCGGAAAGGCT 90339 Query: 116 CTCCTCCAAGGTAAATTCCTCTCTACTTCCTTGTTAAAGCTCGAATCATCTC-AAG 62 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 90340 CTCCTCCAAGGTAAATTCCTCTCTACTTCCTTGTTAAAGCTCGAATCATCTCTAAG 90395 Score = 1238 (191.8 bits), Expect = 2.6e-106, Sum P(2) = 2.6e-106 Identities = 282/303 (93%), Positives = 282/303 (93%), Strand = Minus / Plus Query: 703 CCTCAGGCGGCGGGTAAGGGCTCCCTGCGGGGTATTGTTCCCGGTTTGGGGGGTTTNCCC 644 ||||||||||||| |||||||||| |||||| ||||||||| |||||||||| ||| ||| Sbjct: 89789 CCTCAGGCGGCGG-TAAGGGCTCC-TGCGGG-TATTGTTCC-GGTTTGGGGG-TTT-CCC 89842 Query: 643 GTGATTCCTTGATTGACTCCAAGCTTGACCTGTTCGAGGAAGCCATCGTCAG-CAGAGTA 585 |||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 89843 GTGAATCCT-GATTGACTCCAAGCTTGAACTGTTCGAGGAAGCCATCGTCAGACAGAGTA 89901 Query: 584 GTATCACTCTTTCCAAGGTTGTGGGGCTTGTCTANCCGGGTGGTTCTCTGTGAGAGTTGG 525 ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| Sbjct: 89902 GTATCACTCTTTCCAAGGTTGTGGG-CTTGTCTAGC-GGGTGGTTCTCTGTGAGAGTTGG 89959 Query: 524 AAGATCTCTCCCCTCGCAAGGGTCTGTTGGGTAAGGGCTCTGGAGGGTTCTGCTGCTCGT 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89960 AAGATCTCTCCCCTCGCAAGGGTCTGTTGGGTAAGGGCTCTGGAGGGTTCTGCTGCTCGT 90019 Query: 464 CTACTTGACCATTGTCGCCCGTTGAGAGAAAGCCGTTGTTGCGGGACCATCCGACCGGGC 405 ||||||||||||||||||||||||||||||||| || ||||||| || ||| ||| | | Sbjct: 90020 CTACTTGACCATTGTCGCCCGTTGAGAGAAAGC-GT-GTTGCGG-AC-ATC-GACGGCGT 90074 Query: 404 CGT 402 ||| Sbjct: 90075 CGT 90077
Border_2 (14891_LBU)
TCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATCCGAGTAT
CGACAAGATGTTGAGAAAATGCAAACAGTTGGAAAAGGCTCAAAGCGATGTGGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAG
AGAAAACTCCCTTACATCGTCTCTCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACTCATCCCGATGGTCGAGTGCCTCTCCAGTCTTGGAA
GGAATCCTCGGGAAGTTGCTTCCGCCATTACCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCTTGCTTTCTTTCAAGC
GTTAGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAACCCAAGGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTT
CTTGCTAGCCTTGGCCTTGATCAAGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCTTATGGGGTACAGTGGTTGATAAAAGGTTACGGCCT
ACCACT:GAATTC:TTGAAATCA:TCC:GTTGGCCT:GAGTGA:GGATGGCA:TTAAGT:CGGNGGGTCAT:GAATTTTCCCCACTTTTGNGCAGAGACG
TTAACAAGATTCTTCAAACCAAATTATGATTATTTGG
| Start of BLAST Alignment: | NT 53 / Exon 2 of 2 |
| First 15 bp Perfect Match: | NT 58 / Exon 2 of 2 |
BLAST Details: Query Sequence: 14891_LBU Length: (728 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g38160 68417.t04950 mitochondrial transcription termin... 3099 1.4e-135 1 >At4g38160 68417.t04950 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 2026 Plus Strand HSPs: Score = 3099 (471.0 bits), Expect = 1.4e-135, P = 1.4e-135 Identities = 633/643 (98%), Positives = 633/643 (98%), Strand = Plus / Plus Query: 87 CAAT-ATCCGAGTATCGACAAGATGTTGAGAAAATGCAAACAGTTGGAAAAGGCTCAAAG 145 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 CGATGATCCGAGTATCGACAAGATGTTGAGAAAATGCAAACAGTTGGAAAAGGCTCAAAG 250 Query: 146 CGATGTGGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAGAGAAA 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 CGATGTGGCATCAGAAAACTGGGACTACCTGAGTAACATTGTTGGTATCCAAGAGAGAAA 310 Query: 206 ACTCCCTTACATCGTCTCTCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACT 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 ACTCCCTTACATCGTCTCTCGATGCCCCAAAATCCTGACTTTACGCCTCGATGAGAGACT 370 Query: 266 CATCCCGATGGTCGAGTGCCTCTCCAGTCTTGGAAGGAATCCTCGGGAAGTTGCTTCCGC 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 CATCCCGATGGTCGAGTGCCTCTCCAGTCTTGGAAGGAATCCTCGGGAAGTTGCTTCCGC 430 Query: 326 CATTACCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCT 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 CATTACCAAATTTCCTCCAATACTCTCTCATAGCGTGGAGGAGAAACTCTGTCCCCTTCT 490 Query: 386 TGCTTTCTTTCAAGCGTTAGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAA 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 491 TGCTTTCTTTCAAGCGTTAGGTGTGCCTGAGACTCAACTTGGCAAAATGATACTTTTTAA 550 Query: 446 CCCAAGGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGC 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 551 CCCAAGGCTTATCAGCTACAGCATCGACACCAAGCTGACAGTGATCGTCAGCTTTCTTGC 610 Query: 506 TAGCCTTGGCCTTGATCAAGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCT 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 611 TAGCCTTGGCCTTGATCAAGATGGGATGATTGGCAAAGTTCTGGTGAAGAACCCATTTCT 670 Query: 566 TATGGGGTACAGTGGTTGATAAAAGGTTACGGCCTACCACTGAATTCTTGAAATCATCCG 625 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 671 TATGGGGTACAGTG-TTGATAAAAGGTTACGGCCTACCACTGAATTCTTGAAATCATCCG 729 Query: 626 TTGGCCTGAGTGAGGATGGCATTAAGTCGGNGGGTCATGAATTTTCCCCA-CTTTTGNGC 684 |||||||||||||||||||||||||||||| || |||||||||| || || |||||| || Sbjct: 730 TTGGCCTGAGTGAGGATGGCATTAAGTCGGTGG-TCATGAATTTCCCACAACTTTTGTGC 788 Query: 685 AGAGACGTTAACAAGATTCTTCAAACCAAATTATGATTATTTG 727 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 789 AGAGACGTTAACAAGATTCT-CAAACCAAATTATGATTATTTG 830