At3g20630 SYNGENTA 14986
Genomic Sequence (from TAIR)
atgcatatgggtcaatcaaatagtcttgggtctattgggtaaatacaaactctaatgggctgtacaatattctttttgtgtatccaaactctatccttaa tttagaatattttcaaaattaacccaacaaaaagtcggttaacgaaatttccccaaattgacaacaacttttgctttattgcaattctccccaaaacctc aggcaataagaaaggaatttagaaggacgacgacgtttctcatcatccgtaccttccttgttaagttgtaacggagacgtgtgatatcactcaacaacac atatctgtctctccgtcgtcagagagtttctttcgccgatttcgcaaaaaccctATGGAGCTCCTCCGATCCAACTTGTCTAGGGTTCAGATCCCTGAAC CTACTCATCGCATCTACAAGCATGAGTGTTGCATCTCCTTCGATACTCCGgtaaagcctctctctcacttcgttttcttcttcaaattccgactactctc gactcttctctcgttttcttcggttttgatgaattcgcaatgatgattttcagAGATCCGAAGGAGGATTGTTCGTTGATATGAATAGTTTTCTTGCTTT CGGGAAGGATTATGTTTCTTGGAACTATGAGAAGACTGGAAACCCTGTTTATCTTCATATTAAGCAGACTAGGAAGTCTATTCCCGAGGATCGGCCTCTC AAGAAACCGACTCTGCTCGCTATAGgtatatatacaatgatgattacaatgccgtatctatactgatttttgaacatagagtcgagagattggttttgaa ctgttaatcaatttgcagGTGTTGATGGAGGCTTTGATAACAATGAGCCAGAGTACGAGGAGTCTTATAGCATAGTCATACTTCCGGATTTTGTTTCACT CCCGTTTCCTTCTGTTGAGCTACCAGAGAAGgtgtttgttagcactatgttgttgattttaggtgtgttatcagagagtggtttatggaaaacacattgc atgtatttagctttttgtgatttgttattgcagGTGAGGATTGCTGTCGATACTGTAGTGAATGCCGTTGGTGCTGAGCGGAAAGAGCAAGTTGCAGCTT GGACAGCTGAGAAAAAGTTAATTAGTGAACATGCATTGACACTGCAGCAAATCAAGAGTGGCATTGTCATTCCTCCCTCTGGTTGGAAATGTTCTAAGTG TGATAAGACGGAGAATCTCTGGCTTAATCTTACCGATGGAATGATTCTCTGTGGAAGAAAAAACTGGGATGGAACTGGTGGAAACAACCATGCTGTTGAG CACTACAAAGAGACAGCCTACCCTCTTGCTGTAAAGCTTGGAACTATCACTGCTGACTTAGAAGCAGCAGgtaaagttgtcttgtttccttattcgtaga accagagattagtcattaaacttcacttttgtgtatggctaatatcagttgatagttgtctctttggggtggataagggggacttcctgcatcactttgt tttttttttttaatgttgatgcatgtggattatcttgttctttggatgggttttgatttcttcagcacttaatcattgcaaattttttggcagctcagAT GTTTATTCCTATCCGGAAGATGACAGTGTTTTGGACCCGCTCCTGGCTGAGCATCTGGCCCATTTTGGAATTGACTTCTCGTCGATGCAGAAGgttagta atgatggttcatggttctgttaaagtataaaagtgaagagtggatcttgtctgacactttatattgttgtttgtctgtggtaatgaatttcgtgtactgc atttttattagatactcaagcttaggtattcccataatgatatggtttgttaagatacccatcctgggttgcattggcaagtgctggttgtactagaaag cttatgtcttgtgttcatttctttcttcagtatcaattgccacaaaacaactgtagaaacatggaatatgtctgagactaaatgtttctttaccaagagc aagtagactcacatcagtgttattgcgtacttttttataattgcgattaaaaagacgcagtgcacttggagaatgtaatttcaggtcgttttgagacaat aattcccattcacgcgttcagtctgtttacttgtaattgttgcgtcacatgtaaacatttacaatagtaaactgtattgtgtcttttttcctcatttttc cttgctccatgtactgcttaagttaagaggcttcatttcccaaagcataggttttatagtcacctgtatttgttttcttgtttgtactgccttgatcatc atctttgctaaagatatcccatgctggttttaatctgaataatgttaactttcttgaaatgtttgctacaattttcacagACTGAAATGACAACTGCTGA AAGAGAACTTGATCAAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTC AATCTTGGGAACAGgtactctaatggaaaaattgtcagggatttcgtttccttgttgatgtcttatgcccatttcttttcttttgccagTTGCTACTTGG CAGCTACGATGCAGATTGTTTTCTCTACCCATTCATTTATTTCAAGgtagatgccattgcccatatttctttttcacttatataacttaaatcaaaacaa agcttttgctctttgattcaactgtagtaacttttggttctgagattgttgcagATACTTTTCACATCAGAGCTTAAAGATGGCTTTTGAGATGGCTCCT GCTGATCCAACTTTGGACCTCAATATGCAATTgtgagttattgttagaaaaaatgttactaagtttatgctctggactttctgaaatcatgtgattgaaa tcttggcatcgttatgatgaaagggttttaagattatatttgtgcatactctgtatctgcatgcacgtgctttagtttctgtttttctctccgtttggtt tgatatgctgtgcactttttctaactaatctgatttccatgaggaataattgcatggtaatttgcatatttatttcatactccttgcactgttggttgta gAACAAAGCTTGGACACGGCTTACTATCTGGGAAGTACTCAATGCCTGCAACTCAGgtataactatagtaggaaatatttttgcttgtatgcatatatat atgtatatgatctaaaccaccttttagagcctcagtacattgatttcgcctttcttctgattgcagAAGGATGCTACAACTGGAGATCCTgtaagatttt tatttgaagtcctgtgtttaacttttgaataaatatatgtatgcggatggccacact◄tttttttt◄tgcataccccacttgtgttgatttctgatgact ttacatcttgtttcgttttttaatcgataatagAGACAAGAAGGAATACCTCCTCGCATGTTCAAAAACGTAATTGCCGCGAGCCACGCAGAATTCTCTT CTATGAGACAGCAGgtgaaaaccatgtcttttttaatgttcggagttttgtttattttttaacttgtattggaacgatactccttttcggcatcagttaa cgaaattattttatgttttcatactaactagcaccaatctgtcttgtagGATGCTCTCGACTTTTTCCTCCATCTGGTAGGCAAGGTTGAGCGTGCTAGC AACACGACACCAGATTTAGACCCCTCGAGGAGCTTCAAGTTTGGAATAGAAGAGAAGATCCTTTGTCCGTCTGGAAAGGTTGGATATAATAAGAGGGAAG ACTGTATTCTTTCTTTGAACATTCCGCTACATGAGGCAACTAATAAAGgtatatcctgttcgtctgtctatgttcctcttcctttatcgtttggcgtgtt tcttaattttgcttaatgtttggtgatcaagATGAATTAGAAGCCTTTCACAAGCAAAAAGCAGGAAAAGGATTGGAAGAGAATGATATgtgagtcaatg gacttaagtttaaatctgtttcatagtttcactgcttatctaagatttttttgtttattttcagGAGGTCAAGTGATGAAATAGTACGCCCACGAGTTCC TTTAGAAGCCTGTCTAGCAAATTTTGCATCATCAGAGCCGATTGAAGACTACTATAGCTCTGCTTTGAAGGGAATGACAACAGCTATCAAgtaagatatt gttttttaccgagtgaattcttttgcaaccaagattagaatgaaagcaaggcttgacttttggttcccattttatgcagGACAACTGGTTTGACATCTTT CCCAGATTATTTGGTCTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAGAAACTTGgtctctttctttctgaaacaatgatccttata atgttcccctattgtccctgtatataaatacttattatcctttcttgatttactgtggcagATGTATACATTGATGTTCCGGATGTTATTGATATCAGCC ACATGCGTAGCAAAGGACTCCAACCTGGGGAAGAACTGTTGCCAGATGGCGgtatgttgttatatttatcacaggagtggtgtgttcataattcacataa ataatgattgattgactccatttattgattgtttcaaactcgtggtatcttttctggtgtcatgactactagcctttggaattagcactcagtttcctaa tcattaaaaagtatcagcatcccttaaacggtttctttatggcactcagtctccttataattctgttggctattggatttttctgtatacagTTCCAGAA GAAGTGATGGAATCAGCGCAGCCCGTGGCAAATGAGGAGATAGTTGCACAGCTAGTCTCAATGGGATTTAGCCAGCTTCACTGCCAGAAAGCTGCCATAA ATACTTCCAATGCTGGGGTTGAAGAGGCAATGAACTGGTTACTTTCTCACATGGATGATCCAGgtaattgaaaatagttccacaagtctttagttgaggc tcaactaaattacgactcgagaccgatttctaatatgatgaggcattatgtttcatagACATCGATGCACCAATCTCCCACCAGACATCTGACATTGATC AATCAAGCGTTGATACCTTACTCTCCTTTGGTTTTGCTGAAGATGTTGCTCGGAAGGCACTAAAAGCCTCGgtataacacttttgagcaaattagttaca tttctgcgaggctgttttttctttactcattactgaaatcggttttgttttttttgtctttaatcagGGAGGAGACATTGAGAAAGCAACAGACTGGGTA TTCAACAACCCTAATGCATCTGTTTCAGACATGGATGTATCCTCTAGCAATTCAGCGCAGACTCCGGCTCAAAGTGGATTACCAGATGGAGGAGGGAgtt agtttcttaaaccctcttttgagtctttctatctcattttgcaaaacaaatgttagtgtttcgttttttccacaaagcagtatgaataaaactctaactc aagattgatcttaaatgcagAATACAAGCTGTTTGGAATAGTAAGTCACATGGGAACATCAGTGCACTGTGGTCATTACGTGGCTCACATATTGAAAGAA GGCCGCTGGGTAATTTTCAATGACGACAAAGTTGGTATCTCGACTGATCCTCCTAAAGACATGGGTTATGTCTACTTCTTTCAGCGGCTTGATTGAttcg atggagccagttacagagacaaaaactaatccttttttttttaaatagaaacttttaaggtcgatagggtttttaacatttggattgaggtgacccatgt gactagtttcggttccaaaatcttacatgtggattagtaaatttggttcacttgatgattttatctgtggaacttcgtcacaaattttaagacccgttta gaagctaaacatcattcgctgtctttttaatttgcctcctcagttctcaactactttcagttttttttttttttcttttggataaaagttttgagctttt ccttcagttttggcatcattggt►gcttagatttatgaaaaatgaag►atataaaaggggaatcataagtgtttttttttacattagcagaaaaactgtt gatt
Border_1 (14986_RBU)
AACAGCTATGACCATGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCG
CCTTCAGTTTAAACTATCAGTGTGGCCATCCGCATACATATATTTATTCAAAAGTTAAACACAGGACTTCAAATAAAAATCTTACAGGATCTCCAGTTGT
AGCATCCTTCTGCAATCAGAAGAAAGGCGAAATCAATGTACTGAGGCTCTAAAAG
| Start of BLAST Alignment: | NT 3011 / Intron 10 of 19 |
| First 15 bp Perfect Match: | NT 3003 / Intron 10 of 19 |
BLAST Details: Query Sequence: 14986_RBU Length: (255 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g20630 68416.t02332 ubiquitin-specific protease 14, pu... 689 2.4e-25 1 At4g37040 68417.t04818 metallopeptidase M24 family protei... 153 0.36 1 >At3g20630 68416.t02332 ubiquitin-specific protease 14, putative (UBP14) similar to ubiquitin-specific protease 14 GI:11993473 [Arabidopsis thaliana] Length = 5340 Minus Strand HSPs: Score = 689 (109.4 bits), Expect = 2.4e-25, P = 2.4e-25 Identities = 141/145 (97%), Positives = 141/145 (97%), Strand = Minus / Plus Query: 255 CTTTTAGAGCCTCAGTACATTGATTTCGCCTTTCTTCTGATTGCAGAAGGATGCTACAAC 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 CTTTTAGAGCCTCAGTACATTGATTTCGCCTTTCTTCTGATTGCAGAAGGATGCTACAAC 2926 Query: 195 TGGAGATCCTGTAAGATTTTTATTTGAAGTCCTGTGTTTAACTTTTGAATAAATATATGT 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 TGGAGATCCTGTAAGATTTTTATTTGAAGTCCTGTGTTTAACTTTTGAATAAATATATGT 2986 Query: 135 ATGCGGATGGCCACACTGATAGTTT 111 ||||||||||||||||| | ||| Sbjct: 2987 ATGCGGATGGCCACACTTTTTTTTT 3011 >At4g37040 68417.t04818 metallopeptidase M24 family protein similar to SP|O33343 Methionine aminopeptidase (EC 3.4.11.18) (Peptidase M) {Mycobacterium tuberculosis}; contains Pfam profile PF00557: metallopeptidase family M24 Length = 2219 Plus Strand HSPs: Score = 153 (29.0 bits), Expect = 0.44, P = 0.36 Identities = 109/183 (59%), Positives = 109/183 (59%), Strand = Plus / Plus
Border_2 (14986_LBD)
TTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAAAAGGGGAATCA
TAAGTGTTTTTTTTTACATTAGCAGAAAAACTGTTGATTAAAATATTTAATCTCGGGATACACTGAAATTGGAGATCTTTTAATTAGTTTTTAAGATCAA
AAAGTGGGCTAATTTGTTATATAGTTAACACTGGCCATCATTATAATCTCGAAGA
| Start of BLAST Alignment: | NT > 327 / Downstream |
| First 15 bp Perfect Match: | NT > 351 / Downstream |
BLAST Details: Query Sequence: 14986_LBD Border #2 Length: (255 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N K10D20 60546 798 7.2e-30 1 F16N3 51472 170 0.16 1 F4P12 67286 167 0.21 1 F11K13 68394 164 0.27 1 K10D20 60546 Length = 55,481 Minus Strand HSPs: Score = 798 (125.8 bits), Expect = 7.2e-30, P = 7.2e-30 Identities = 174/195 (89%), Positives = 174/195 (89%), Strand = Minus / Plus Query: 255 TCTTCGAGATTATAATGATGGCCAGTGTTAACTATATAACAAATTAGCCCACTTTTTGAT 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51945 TCTTCGAGATTATAATGATGGCCAGTGTTAACTATATAACAAATTAGCCCACTTTTTGAT 52004 Query: 195 CTTAAAAACTAATTAAAAGATCTCCAATTTCAGTGTATCCCGAGATTAAATATTTTAATC 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52005 CTTAAAAACTAATTAAAAGATCTCCAATTTCAGTGTATCCCGAGATTAAATATTTTAATC 52064 Query: 135 AACAGTTTTTCTGCTAATGTNNNNNNNNNCACTTATGATTCCCCTTTTATATTGTGGTGT 76 |||||||||||||||||||| ||||||||||||||||||||||| | | | Sbjct: 52065 AACAGTTTTTCTGCTAATGTAAAAAAAAACACTTATGATTCCCCTTTTATATCTTCATTT 52124 Query: 75 AA-ACAAATTGACGC 62 | |||| | || Sbjct: 52125 TTCATAAATCTAAGC 52139 F16N3 51472 Length = 171,769 Plus Strand HSPs: Score = 170 (31.6 bits), Expect = 0.17, P = 0.16 Identities = 72/103 (69%), Positives = 72/103 (69%), Strand = Plus / Plus