At5g63050 SYNGENTA 16089
Genomic Sequence (from TAIR)
cacaaccccttttaagtccaatgaaatcaagttgttagttaattcattgtgaaactagagattcaagttttggttccttcaaagatattcgatataaaag agaggacttcaagttttgagaacgtaattacatgtttcacgtcgtggttttcaaaaaaatgattataagaaatgttattttcgtgttgattgtatgattt gaagaaacaaaacatcatgtaaatctaaatgtaaagagcttttttatcttgaaaaaagttgataaaaaagttgtgaaagttctattcaaatgattttttt ttttgttaagactatgttcttcaactcgttatttgactatttaaaatagaaaatcaattgtgatttaataaaaaaaaaaacttaatagtaatttctccga aacgacgacgtttagaggtgttggtattaaaaaacctttgattaaccgcttgcctgcaatctgctctcctatctcttccaatctcctctcctctctatct atccgcgtccccatttcttcttccctctaaaattccaatctttcttattgcttttttttattcaaagcttcaagattttcactagggttctttccctttc tcttattcgataaattctgttcttttctttcgtattctcacggacgaacaaaccccaaggcaacgagctcatgattgaggtccgttcttctgctctttcc ctctcagtttcttcgcagctgttttctaatttgcaatctattttatggatttggggtacttttgttaagggaacaaaacctatcattttccaggtttctt atggttgcgctttagattttatagtttagtgtaatttaatctgatttggggaattgggtgttggataagagtgttttgcagctgagaggattgaaaaatt gaatatttatgatatttaagctcgctaatgaggttctcttacttcggattttgctcagcttcgctcctgtcaagtaatttttgttgtgatctatatatga aatttccttttaatgttttatggtcgctacttgtgatttcatcatctttggaggttacaatcatcttattcaatcctttcttcggcctcagattgtggct tttgagtaaatgattcactgctcagctagagacaATGGTGTTGGTAACCCATAAATTGCAGgtatcttagacatagatctgtaaagtcctaaattctact ttgttttgtgtctctgtaatggtcatgtctgcaaatggttgtaccttccgtttcactcttgtaaagccttcttttacttgccacactagaaatatagatg tttacctcccccttgttctctcatgtagGGTTCACATGTCTTGTCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTGTGTTTAAAGAGACCTGTTACG ACAGTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGgtgagtatcccactttacaaatccctgcttaggttatg tactacttagtttgagactcattactctctct◄gtacgactgtactctaggaaggtagatacgtagttatattgtggattaaaatgtgcctcttaatacg ctgagacctatctgttagctaagagattccttgttagatactgagacgtatgaacatataggaaactatactaaaaagttatagttcatatattcccttt gcaattgattctcggaatcataatatgttgtgaaactcttttg►cagTTTAGGGTCCCCTTGCAACGGT►GGATTGAGAGCAAAACCTTTCAGAGTTACA TCTTTTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTAATAACTCTGTCAAACTATCTTACCGTTCAGATGATG ACGAAAATAATGTGAATGGCTCCCCAAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGCAACCCGCTATTCAGAA ACTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTATTCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCAA GAAACTGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCTGGTTTTGGAGTCTAGACGCAGCTATCAAGATTCCGT TGCTGTTATTgtaagtatcagcatcaaagcatctttttcttttgcttgatgaggtagtctagagttagttatcaatagaggaaaatcgactagatgtgaa cttatattcaaaaactgtccttaggaagatttaagagtgtcacagccacttttttcttttccaagttccttgtatgtgtattgactatactttcaccttg accttttttgtagTGTTCCAGCTTTCCTAGCTGTTTACGCGATCTGTGGTGCTGAAGTTACAAAGGAATTATCCCCTATGTGGGTGGTTGGCCCCTTGAT CATCGCCCTTTATATAAAAATGTTCCAAGGACTATGTTCCCTTTACGCCTTCTGCTTCAACCAAACCATCAAAATGATAAGAAACCTACCATCGTATTAT CTTGTAGCATACCAATACATTGCCGATGGAAAGCTCAAAGACGACGTTAAAGCTCTAGTGTTTAAACCAGTGGTGGCCATCAAGAACACAGACTACAAAG AGCTCACACGCACGAAGCTGAAACAGTTCCAAGAATGGATCATTGAGAAATACCTGGATTTTGTTGAATCTGTATGGCCTTATTACTGCAGAACTATCAG ATTCCTGAAGAGGGCTAACCTGATTTGAagatcttcaacatggaaccctcaaattctgacttctcagggcttctctatgatttctctctgtgctttgttt acctttttttttttttttcttaattttaggaaggcttttcatgttgtttgttcttatctctatgtatactgataccttttttgaggttttacaatgagtt cttttaatattaagggttatcccttttctccatacttaaaaattatctatacacatataaatcgacaacaacagaagaaataagtgcttaaaggtctctt ataaacctctTTAGCTCCGGAAATTTGATGGTAATGTTTCTTCAGTAAAGTACTCCTTTCTGACGGTCTCTGCTGAGCAAAACTTGACcttcacataaag caaagtataaaaatccatctagtccagtcctctgaataaccacactatgtagtatatagcaattagaatcgatgcataaaaacatagcaatatggtatgg aag
Border_1 (16089_LB)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGTTAGAGAGAGTAATGAGTCTCAAACTAAGTAGTACATAACCTAAGCAGGGATTTGTAAAGTGGGATACTCACCTAAAACAACATTTTTGCTTCAAT
CGTAAATGCTTATCTTTCCTCTCAACAAAGTGCACTGTCGTAACAGGTCTCTTTAAACACAAGCCTCTGGTCCATGTTGGCGAACTCCAAGGAGACAAGA
CATGTGAACCCTACATGAGAGAACAAGGGGGAGGTAAACATCTATATTTCTAGTGTGACAAGNAAAAGAAGGCTTTACAAGATCATCCACGCATGTGGCT
TCACTTGGTAAGCAATAACGACTTACATTGATGATACTTAACCCACAACTTAGCGCAACCAACCTATTCTACTNTCTTCGCGG
| Start of BLAST Alignment: | NT 398 / Intron 3 of 4 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 398 / Intron 3 of 4 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 16089_LB Length: (583 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 1376 2.0e-57 1 At2g47115 68415.t05366 expressed protein 458 5.5e-15 1 At5g49470 68418.t05686 protein kinase family protein cont... 179 0.9998 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 177 0.9999 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Minus Strand HSPs: Score = 1376 (212.5 bits), Expect = 2.0e-57, P = 2.0e-57 Identities = 322/369 (87%), Positives = 322/369 (87%), Strand = Minus / Plus Query: 571 TAGA-ATAGGTTGGTTGCG--CTAAGTTGTGGGTTAAGTATCATCAATGTAAGTCGTTAT 515 |||| |||| | || | |||| || | || | || ||||| | || || Sbjct: 708 TAGACATAGATCTGTAAAGTCCTAAATTCTACTTTGTTTTGTGTCTCTGTAA-TGGTCAT 766 Query: 514 TGCTTACCAAGTGAAGCCACATGCGTGGATGA-TCTTGTAAAGCCTTCTTTTNCTTGTCA 456 || ||| || || | | | | | ||||||||||||||||||| |||| || Sbjct: 767 GTCTG--CAAATGGTTGTACCTTCC-GTTTCACTCTTGTAAAGCCTTCTTTTACTTGCCA 823 Query: 455 CACTAGAAATATAGATGTTTACCTCCCCCTTGTTCTCTCATGTAGGGTTCACATGTCTTG 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 824 CACTAGAAATATAGATGTTTACCTCCCCCTTGTTCTCTCATGTAGGGTTCACATGTCTTG 883 Query: 395 TCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTGTGTTTAAAGAGACCTGTTACGACA 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 884 TCTCCTTGGAGTTCGCCAACATGGACCAGAGGCTTGTGTTTAAAGAGACCTGTTACGACA 943 Query: 335 GTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGG 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 944 GTGCACTTTGTTGAGAGGAAAGATAAGCATTTACGATTGAAGCAAAAATGTTGTTTTAGG 1003 Query: 275 TGAGTATCCCACTTTACAAATCCCTGCTTAGGTTATGTACTACTTAGTTTGAGACTCATT 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1004 TGAGTATCCCACTTTACAAATCCCTGCTTAGGTTATGTACTACTTAGTTTGAGACTCATT 1063 Query: 215 ACTCTCTCT 207 ||||||||| Sbjct: 1064 ACTCTCTCT 1072 >At2g47115 68415.t05366 expressed protein Length = 2254 Plus Strand HSPs: Score = 458 (74.8 bits), Expect = 5.5e-15, P = 5.5e-15 Identities = 100/108 (92%), Positives = 100/108 (92%), Strand = Plus / Plus
Border_2 (16089_RB)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCKCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTYCCTTGCAACGGTAGGATTGAG
AGCAAAACCTTTCAGAGTTACATCTTTTAAAGGGGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGTAAGAAAGTTACTAATAACTNTNTCAAA
CTATCTTACCGTTCAGANGATGACGAAAATAATGTGAATGGCTCCCCAAAGGCACAGAACACTTCGTTTTCATATACCTNGGAAACAGAGGANTCCATGA
CAGGNCAACCCGCTATTCAGAAACTATTCAAGAAATGGGTGACATTGTTGCGCACACAGTCACCTATTCAAGTGATTGACGAGACTTTAGGAGGAGAACA
GGTTCCACAAACGACGNAGCANGAAACTGAAACAGAAATTCGGNANGCAGAAAGNCTCCAGAGTACCAAAAATACAGTTTGGCCTGGGTTTGGAGGCTAG
ACGCAGCTATCAAGANTCCGTTGCTGTATTGNAAGAACAGCATCAAACTCTTTTTCTTTTGCTTGATGAGNANGCTNGAGTAGGTATCAATAGAGGAAAA
TCGGCTTAGATTTGAANATATATTCNAAAACTGGCCTTAGGAGGATTAAGAGGGTNCNCCCCCTTTTTTCTTTTCCAGGGGC
| Start of BLAST Alignment: | NT 608 / Intron 3 of 4 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | NT 633 / Exon 4 of 5 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 16089_RB Length: (782 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g63050 68418.t07302 expressed protein 2603 2.9e-113 1 >At5g63050 68418.t07302 expressed protein Length = 2561 Plus Strand HSPs: Score = 2603 (396.6 bits), Expect = 2.9e-113, P = 2.9e-113 Identities = 568/622 (91%), Positives = 569/622 (91%), Strand = Plus / Plus Query: 167 CAGATTGTCGTTYCCTTGCAACGGTAGGATTGAGAGCAAAACCTTTCAGAGTTACATCTT 226 ||| || || +|||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1283 CAGTTTAGGGTCCCCTTGCAACGGT-GGATTGAGAGCAAAACCTTTCAGAGTTACATCTT 1341 Query: 227 TTAAAGGGGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGTAAGAAAGTTACTA 286 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1342 TTAAAGGTGGCATCCAAAATAATGAATCAGGAGGAAGTGAGGGTGGGAAGAAAGTTACTA 1401 Query: 287 ATAACTNTNTCAAACTATCTTACCGTTCAGANGATGACGAAAATAATGTGAATGGCTCCC 346 |||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1402 ATAACTCTGTCAAACTATCTTACCGTTCAGATGATGACGAAAATAATGTGAATGGCTCCC 1461 Query: 347 CAAAGGCACAGAACACTTCGTTTTCATATACCTNGGAAACAGAGGANTCCATGACAGGNC 406 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct: 1462 CAAAGGCACAGAACACTTCGTTTTCATATACCTCGGAAACAGAGGATTCCATGACAGGGC 1521 Query: 407 AACCCGCTATTCAGAAACTATTCAAGAAATGGGTGACATTGTTGCGCACACAGTCACCTA 466 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1522 AACCCGCTATTCAGAAACTATTCAAGAAATGGTTGACATTGTTGCGCACACAGTCACCTA 1581 Query: 467 TTCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGNAGCANGAAA 526 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct: 1582 TTCAAGTGATTGACGAGACTTTAGGAGGAGAACAGGTTCCACAAACGACGAAGCAAGAAA 1641 Query: 527 CTGAAACAGAAATTCGGNANGCAGAAAGNCTCCAGAGTACCAAAAATACAGTTTGG-CCT 585 ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 1642 CTGAAACAGAAATTCGGAAAGCAGAAAGTCTCCAGAGTACCAAAAATACAGTTTGGTCCT 1701 Query: 586 GGGTTTGGAGGCTAGACGCAGCTATCAAGANTCCGTTGCTGT-ATTGNAAGAA-CAGCAT 643 || ||||||| ||||||||||||||||||| ||||||||||| |||| ||| | |||||| Sbjct: 1702 GGTTTTGGAGTCTAGACGCAGCTATCAAGATTCCGTTGCTGTTATTGTAAGTATCAGCAT 1761 Query: 644 CAAA-C-TCTTTTTCTTTTGCTTGATGAGNANG-CTNGAGT-AGGTATCAATAGAGGAAA 699 |||| | |||||||||||||||||||||| | || |||| || ||||||||||||||| Sbjct: 1762 CAAAGCATCTTTTTCTTTTGCTTGATGAGGTAGTCTAGAGTTAGTTATCAATAGAGGAAA 1821 Query: 700 ATCGGCTTAGATTTGAANATATATTCNAAAACTGGCCTTAGGAGGATT-AAGAGGGTN-C 757 |||| || |||| |||| ||||||| ||||||| |||||||| |||| ||||| || | Sbjct: 1822 ATCGACT-AGATGTGAACTTATATTCAAAAACTGTCCTTAGGAAGATTTAAGAGTGTCAC 1880 Query: 758 NCCCCCTTTTTTCTTTTCCAGG 779 || ||||||||||||||| | Sbjct: 1881 AGCCACTTTTTTCTTTTCCAAG 1902