At1g01040 SYNGENTA 16360
Genomic Sequence (from TAIR)
tacaaaacagaagcaagcaagtggaaaacagaccagaagagagaggaagacgaagagagaaacagaacagagtagggatcgatagaccgtggaatctcag aatcacaaacactttgcaaaagggttttcaattcctatttatttacaaagaaatcatcaatagtagtggtctctagggttttgcttgctcttcttcgtga cccctttttacctgcaaacaacaacttcaaaattggcgtgtttcgtacggtctatctaaccctaatctgtcacaaaacactcttcttctctcaccccttt ttctgggtttattcaattctcgtgcttttggttctgttttcttctctggggatttggttttcttgagtgagtttttctcctctttcttatgttcttgatt tgattattatatagaattATGGTAATGGAGGATGAGCCTAGAGAAGCCACAATAAAGCCTTCTTATTGGCTAGATGCTTGCGAGGACATCTCTTGTGATC TTATCGATGATCTCGTGTCTGAATTTGATCCTTCCTCTGTTGCTGTCAATGAATCCACTGATGAAAACGGCGTCATCAATGATTTTTTCGGTGGGATTGA TCACATTTTAGATAGTATCAAGAACGGTGGAGGCTTACCAAACAATGGCGTTTCTGATACCAATTCTCAAATCAACGAGGTTACTGTAACTCCTCAGGTT ATTGCTAAGGAGACAGTGAAGGAGAATGGGTTGCAAAAGAATGGCGGTAAGAGAGACGAATTCTCGAAAGAGGAAGGAGACAAGGATAGGAAGAGAGCTA GGGTTTGTAGTTATCAGAGTGAAAGGAGTAACCTTTCAGGTAGAGGGCATGTTAATAATTCTAGGGAGGGAGATAGGTTTATGAATAGGAAACGTACTCG TAATTGGGACGAGGCGGGTAACAATAAGAAGAAAAGGGAATGTAACAATTACAGAAGAGATGGTAGAGATAGAGAAGTTAGGGGTTATTGGGAGAGGGAT AAAGTTGGTTCCAATGAGTTGGTTTATAGGTCAGGGACTTGGGAAGCTGATCATGAAAGAGATGTTAAGAAAGTGAGTGGTGGAAACCGCGAATGCGATG TCAAGGCAGAGGAGAACAAGAGTAAGCCTGAAGAACGTAAAGAGAAGGTTGTGGAAGAGCAAGCAAGGCGATACCAGTTGGATGTTCTTGAACAAGCTAA AGCGAAAAACACGATTGCTTTCCTTGAGACCGGTGCTGGAAAGACACTTATCGCGATTCTTCTTATTAAAAGTGTTCATAAGGATCTGATGAGCCAGAAC AGAAAAATGCTCTCGGTGTTCTTGGTTCCCAAAGTGCCTTTGGTTTATCAGgtaccgcctaataagaaacatgtttgtattcttttttaaaaaattggtt acctattggttttggttggttgatttatcttacgttatcagCAAGCAGAAGTGATCCGTAATCAAACTTGTTTTCAAGTTGGACATTATTGTGGTGAGAT GGGACAGGACTTTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAAGCAGgttgctttttgatgcttctttttcataccagctttgatcttttat atgaatcagttcttgaagttaacgagtttttttctattttcttctacgcagGTTCTAGTTATGACAGCACAAATTCTGTTGAATATACTGAGACACAGTA TCATTAGAATGGAAACAATTGATCTTCTTATTCTCGACGAGTGTCACCACGCTGTCAAGAAACATCCATACTCTTTAGTGATGTCAGAGTTTTACCATAC AACTCCTAAAGATAAAAGACCTGCCATCTTTGGAATGACTGCTTCGCCTGTTAATTTAAAGGgtactgattgtttcttgtatacagttctctaagcttgc caatgttcttgaaagtgacactttttgtttgtaaacgtagGTGTTTCAAGCCAAGTAGATTGTGCGATAAAGATACGTAACCTCGAGACCAAGTTGGATT CTACGGTTTGTACTATAAAAGATCGAAAAGAATTAGAGAAACATGTGCCTATGCCTTCAGAGATAGTCGTCGAGTATGACAAAGCTGCTACTATGTGGTC TCTTCATGAGACAATAAAGCAAATGATTGCAGCTGTTGAAGAAGCGGCACAAGCAAGTTCAAGGAAAAGCAAGTGGCAATTTATGGGGGCTAGGGATGCT GGAGCAAAGGATGAATTGAGACAGGTTTATGGCGTCTCTGAAAGAACGGAGAGCGATGGTGCTGCCAATTTGATTCATAAACTTAGAGCTATCAATTATA CTCTTGCTGAATTGGGTCAATGGTGTGCTTACAAGgtaaaaaaacaacttagtaaatagttttcgataatttgaaatggatatgttattttcatatgata taatttttgtgtcttctttcaagGTGGGACAATCATTCTTGTCTGCTTTGCAAAGTGATGAGAGGGTGAATTTCCAAGTCGACGTGAAGTTTCAAGAATC ATACCTCAGTGAGGTGGTGTCACTCTTGCAATGTGAGCTTCTGGAAGGCGCTGCTGCTGAAAAAGTCGCGGCGGAAGTTGGCAAACCAGAAAATGGTAAT GCACATGACGAGATGGAGGAGGGAGAGCTCCCTGATGATCCTGgtaagtattaatcacattctttgtctaatcgctttttaccggttttagaaatccaat attaacagagctctatggttttagTGGTCTCGGGAGGGGAGCACGTTGATGAAGTAATAGGCGCCGCAGTGGCTGATGGGAAAGTTACTCCAAAAGTACA ATCATTGATCAAACTACTCCTCAAATATCAGCACACAGCTGATTTTCGAGCTATTGTTTTCGTTGAGAGGGTGGTTGCTGCTTTGGTTCTTCCTAAGgtt aggattaaagtgaaaaaaacaatttattttcttgtgtataatttttctgcctatgtctctctgagcctggaaattttcagGTTTTTGCGGAGCTGCCTTC GCTTAGTTTTATACGGTGTGCCAGCATGATTGGACACAATAACAGCCAGGAGATGAAATCATCTCAAATGCAGGATACAATTTCCAAATTCCGAGATGGG CATgtatgattttttttgtctttcattaagacatattttttttttatcttatactgaaatgtcttactatttcctctttctactgtgatagGTGACACTG TTAGTTGCCACAAGCGTTGCTGAGGAAGGACTTGATATTAGGCAATGTAACGTTGTTATGCGTTTCGACCTTGCAAAGACGGTGCTGGCATACATTCAGT CTCGTGGCCGGGCAAGAAAGCCTGGATCAGACTACATACTCATGGTTGAGAGgtacataaaaagctttaagaactacattttgatttttgtaactactgg tcaccaaatcagtactgatatgtcaacttgtgttacttgcagAGGAAATGTATCTCACGCAGCGTTCCTAAGGAATGCTAGGAACAGTGAGGAGACACTT CGAAAAGAAGCAATAGAAAGGACTGATCTTAGTCATCTCAAAGATACATCGAGATTAATCTCAATTGATGCTGTGCCTGGTACAGTTTATAAGGTGGAGG CAACTGGTGCCATGGTTAGCTTGAATTCCGCGGTTGGTCTTGTACATTTCTACTGCTCTCAGCTTCCTGGTGACAGgtaagtttgccgataatttttatt gtcctaatgacctctccttttcctgtatgagatgatggattgcttctctctcgtgtctcagGTATGCAATCCTTCGTCCTGAGTTTAGCATGGAGAAGCA TGAAAAGCCTGGGGGCCACACGGAATATTCATGTAGGCTTCAGCTTCCTTGCAATGCACCGTTTGAAATACTTGAGGGTCCTGTTTGCAGTTCAATGCGT CTTGCACAACAGgtggacataatagtttgtttgtttatcttacttgttattttctttcagtgttccatgtcttgaagtattgcgtgtttgatatgtagGC TGTATGTTTAGCTGCTTGCAAGAAACTGCATGAGATGGGTGCATTTACCGATATGCTATTACCGGACAAAGGAAGTGGTCAAGACGCTGAGAAGGCTGAC CAAGATGATGAAGGTGAGCCTGTTCCTGGAACTGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCGGATGTACTTAAGgtaatattagcactaacct atgaaatttttgctaaatgtgcttttagaggaatgtggttttcaatatttgactgtttataccatgcacagGGAGAATGGGTTTCATCTGGAAAGGAAGT TTGTGAGAGCTCAAAGCTATTCCATTTATACATGTATAATGTCAGATGTGTAGATTTTGGCTCTTCAAAAGATCCATTCCTAAGCGAAGTTTCAGAGTTC GCGATTCTTTTTGGCAATGAGCTGGATGCAGAGgttgttgtttctctctccatggatttgagtattagaatttgaagatgtaaccatggttaactaagat ttgttttactgtatcagGTATTATCGATGTCTATGGATCTTTATGTTGCTCGGGCCATGATCACTAAAGCATCTCTTGCTTTCAAGGGATCACTTGATAT TACAGAAAACCAGgttagactgaacaacaacctctatttttcctaacatttatgtttgcttgagaaactttttatcttatattggtggcatttcttgtgc agCTATCATCTCTAAAAAAGTTTCATGTGAGGTTAATGAGTATCGTGTTGGATGTTGATGTTGAACCCTCCACGACACCATGGGATCCTGCAAAGGCCTA CCTGTTTGTCCCTGTTACTGACAATACGTCTATGGAACCCATAAAAGGGATCAACTGGGAATTGGTTGAAAAGATTACGAAAACCACAGCGTGGGACAAC CCTCTTCAGAGAGCTCGTCCCGATGTATATCTCGGGACTAATGAGAGAACTCTTGGTGGGGACAGAAGGGAATATGGGTTTGGTAAACTTCGTCACAACA TTGTATTTGGGCAGAAATCTCACCCAACTTATGGTATTAGAGGAGCTGTTGCATCCTTCGATGTTGTGAGAGCTTCTGGATTGTTACCTGTGAGAGATGC TTTTGAGAAGGAAGTAGAAGAGGATTTATCAAAAGGAAAATTGATGATGGCTGATGGGTGCATGGTTGCAGAAGATCTTATTGGGAAAATAGTGACAGCC GCACATTCCGGGAAGCGGTTTTACGTAGATTCAATTTGTTATGACATGAGTGCAGAAACATCTTTCCCTAGGAAAGAGGGATATCTTGGTCCCCTAGAGT ACAACACGTACGCTGACTATTACAAGCAAAAgtaagaaaacatcttcaaataattttttgatttcttcaatcctttttctaagtttcattagatactaat acttttctaatatcacgaggacttacatggcctcaagtcacctgtggtgttgtgcaagaaggagaagcaaagtctgtctatgtattatgagatagctact tctatggctaggatatatgttgtacaagaccggcttttcttctacttcttgcacaacctgaggttattgaggctatacaagtcttcttctataatgttat ttattagGTATGGAGTTGATTTGAACTGTAAGCAACAACCTTTGATTAAAGGACGTGGTGTTTCGTATTGCAAGAACCTTCTTTCTCCTCGGTTTGAACA GTCAGgttataagaaattcttttcactttaacaatttaatgatataaccgataaattaacgcttctttgttttttcttgcaattcaaagGTGAATCTGAG ACAGTCCTTGATAAGACATATTACGTGTTTCTTCCACCTGAACTATGCGTTGTGCATCCGCTTTCGGGTTCACTTATCCGAGGTGCTCAGAGGTTACCCT CTATAATGAGAAGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTATTCCCACATCAAAGgtatatatatatatattatg cttagtgtcttttttttttttgttgaaactatctaatcatatttggtatatatatgtagATTCTTGAAGCCTTGACTGCCGCCTCGTGCCAGGAAACGTT CTGCTACGAGAGAGCTGAGCTTTTAGGAGATGCGTATCTAAAATGGGTTGTTAGTCGTTTTCTGTTTCTCAAGTATCCTCAAAAGCACGAGGGTCAGCTT ACAAGGATGAGGCAACAAATGGTTAGTAATATGGTTCTTTATCAGTTTGCTCTGGTTAAAGGGCTTCAGTCATATATCCAGGCGGATCGATTCGCCCCGT CTAGGTGGTCTGCTCCTGGTGTGCCTCCGGTTTTCGACGAGGACACAAAAGATGGAGGATCTTCGTTTTTCGATGAAGAGCAAAAACCTGTTTCCGAGGA AAACAGCGATGTGTTTGAAGATGGGGAGATGGAGGATGGTGAACTAGAGGGTGATTTGAGTTCGTACCGAGTTTTATCTAGCAAAACGTTAGCTGATGTT GTTGAGGCTTTGATTGGTGTTTATTACGTCGAAGGGGGTAAGATTGCAGCTAATCATTTGATGAAATGGATTGGGATTCACGTGGAGGATGATCCTGATG AAGTCGATGGAACATTGAAAAATGTTAATGTTCCAGAGAGTGTGCTCAAGAGCATCGACTTTGTTGGTCTTGAGAGAGCTCTTAAATATGAGTTTAAAGA GAAAGGTCTTCTTGTTGAAGCTATAACACATGCTTCAAGACCATCTTCAGGTGTTTCGTGTTACCAGAGATTGGAATTTGTTGGTGACGCGGTCTTGGAT CATCTCATCACAAGACATCTATTTTTCACATACACAAGCCTTCCTCCTGGTCGGTTAACAGATCTTCGAGCTGCAGCGGTTAACAACGAGAATTTTGCTC GCGTTGCGGTTAAACATAAACTCCACTTGTACCTTCGTCACGGTTCAAGCGCCCTCGAAAAACAGgtaaacaagattaagaaacaaagtatattgttctc aaagagtttcaaatgtttgactgtttggttactttttgtttttcagATTCGGGAATTTGTGAAGGAGGTTCAAACCGAGTCATCGAAACCGGGGTTTAAC TCTTTTGGTTTGGGAGACTGCAAAGCACCAAAAGTTCTTGGAGACATTGTTGAATCTATTGCAGGTGCTATTTTTCTTGATAGTGGAAAAGATACAACTG CTGCTTGGAAGgttagttagttagttatttcggttgaaaatctctaactaactcgtttttttttggaattgtaattcttagcttactaaatcgtatgatt cttttccagGTTTTTCAACCTTTGCTTCAGCCCATGGTGACACCAGAGACACTTCCAATGCATCCGGTGCGAGAGCTACAAGAGCGGTGCCAGCAACAAG CAGAAGGGTTAGAATACAAAGCGAGTAGGAGTGGTAACACAGCGACTGTGGAAGTTTTCATCGACGGTGTTCAAGTTGGAGTAGCGCAAAACCCGCAGAA GAAAATGGCTCAAAAGCTAGCTGCGAGGAACGCACTTGCAGCTTTGAAAGAGAAAGAAATAGC◄AGAA◄TCAAAGGAGAAGCATATCAACAACGGTAATG CGGGAGAGGATCAAGGCGAGAATGAGAATGGGAACAAGAAGAATGGGCATCAGCCGTTTACGAGACAAACGTTGAATGATATTTGTTTGAGGAAGAATTG GCCAATGCCTTCTTACAGgtaacaacaatttaatagaaagtgggtaaacaaatcaattttgggctttattgagcttatttcgggtttgtggtgaattttg tagATGTGTGAAAGAAGGAGGACCGGCTCATGCAAAGAGATTTACGTTTGGGGTAAGAGTTAATACGAGCGATAGAGGATGGACCGATGAGTGTATTGGC GAGCCAATGCCGAGTGTTAAGAAAGCTAAGGATTCAGCTGCGGTTCTTCTACTTGAGCTTTTAAATAAAACTTTTTCTTGAttcttttac►tctcttcaa cgagatgtagtcattacattttaaaccttaaaaccatagtggttgtagtgttttaattgatctgttgttattcgagtttaattggtttatagaactcttc aaacaaattaaaccaaaaatttcaatgccaagaaagggtctttaaaacgaaattacagaaggaccaaatgataaggaagaaaaatgcagagataaaagta atatcaattaggatcatatgcttcttattatcaatgaaaagtaacagaaacatagatgctgcagaaatcttctgaggagaagctTCAACGCCTCAGGGTG TGGAGAATGTATTCAGCATAGAGGTCCctgtaatggggaattcagaatccagagttgctttaatgttacaaactaaaaaagatgtaagagagtttggttc ttgataaagaaacagaggcttacATTGAGTACTGGATAGCTTCAACCGCAGACTCAGATGGCAGAAAATCATTCACTGCAACTTCCTTGTTCTCGTTTTT CTTGTctgtaagatattagagttaaagggaaaaactaatacttgttgagagatcaatagagatgaataaggaggaacactgaagaaaaaggatacAGTCT TCGAAGAAACGACGGATTTCAGAGAGACGGTGAGGAGGAAGTTCTTTGATGTCAGTGTAGTGCTTATATTCAGGATCATCAACACACACTGCAATGATCT TGT
Border_1 (16360_RBU)
CTTGAGCTATTTCTTTCTCTTTCAAAGCTGCAAGTGCGTTCCTCGCAGCTAGCTTTTACCGTCGATGAAAACTTCCACAGTCGCTGTGTTACCACTCCTA
CTCGCTTTGTATTCTAACCCTTCTGCTTGTTGCTGGCACCGCTCTTGTAGCTCTCGCACCGGATGCATTGGAAGTGTCTCTGGTGTCACCATGGGCTGAA
GCAAAGGTTGAAAAACCTGGAAAAGAATCATACGATTTAGTAAGCTAAGAATTACAATTCCAAAAAAAACCGAGTTAGTTAGAGATTTTCAACCGAAATA
ACTAACTAACTAACCTTCCAAGCAGCAGTTGTATCTTTTCCACTATCAAGAAAAATAGCACCTGCAATAGATTCAACAATGTCTCCAAGAACTTTTGGTG
CTTTGCAGTCTCCCAAACCAAAAGAGTTAAACCCCGGTTTCGATGACTCGGTTTGAACCTCCTTCACAAATTCCCGAATCTGAAAAACAAAAAGTAACCA
AACAGTCAAACATTTGAAACTCTTTGAGAACAATATACTTTGTTTCTTAATCTTGTTTACCTGTTTTTCGAGGGCGCTTGAACCGTGACGAAGGTACAAG
TGGAGTTTATGTTTAACCGCAACGCGAGCAAAATTCTCGTTGTTAACCGCTGCAGCTCGAAGATCTGTTAMCCGACCAGGAGGAAGGCTTGTGTATGTGA
AAAATAGATGTCTTGTGATGAGATGATCCAAGACCGCGTCACCAACAAATTCCAATCTCTGGTAACACGAAACACCTGAAGATGGTCTTGAAGCATGTGT
TATAGCTTCAACAAGAAGACCTTTCTCTTTAAACTCATATTTAAGAGCTCTCTCAAGACCAACAAAGTTGATGCTCTTGAGCACACTCTCTGGAACATTA
ACATTTTTCAATGTTCCATCGACTTCATCAGGATCATCCTCCACGTGAATCCCAATCCATTTCATCAAATGATTAGCTGCAATCTTACCCCCTTCGACGT
AATAAACACCAATCAAAGCCTCAACAACATCAGCTAACGTTTTGCTAGATAAAACTCGGTACGAACTCAAATCACCCTCTAGTTCACCATCCTCCATCTC
CCCATCTTCAAACACATCGCTGTTTTCCTCGGAAACAGGTTTTTGCTCTTCATCGAAAAACGAAGATCCTCCATCTTTTGTGTCCTCGTCGAAAACCGGA
GGCACAGCACTACCAAC
| Start of BLAST Alignment: | NT 7149 / Exon 19 of 20 |
| First 15 bp Perfect Match: | NT 7145 / Exon 19 of 20 |
BLAST Details: Query Sequence: 16360_RBU Length: (1217 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g01040 68414.t00004 DEAD/DEAH box helicase carpel fact... 5683 3.2e-262 2 At3g03300 68416.t00296 DEAD/DEAH box helicase carpel fact... 351 3.1e-07 1 At3g43920 68416.t04360 ribonuclease III family protein si... 317 1.2e-05 1 At5g45150 68418.t05161 ribonuclease III family protein si... 311 2.1e-05 1 >At1g01040 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 8019 Minus Strand HSPs: Score = 262 (45.4 bits), Expect = 3.2e-262, Sum P(2) = 3.2e-262 Identities = 54/56 (96%), Positives = 54/56 (96%), Strand = Minus / Plus Query: 57 AAAAGCTAGCTGCGAGGAACGCACTTGCAGCTTTGAAAGAGAAAGAAATAGCTCAA 2 |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 7467 AAAAGCTAGCTGCGAGGAACGCACTTGCAGCTTTGAAAGAGAAAGAAATAGCAGAA 7522 Score = 5683 (858.7 bits), Expect = 3.2e-262, Sum P(2) = 3.2e-262 Identities = 1156/1181 (97%), Positives = 1157/1181 (97%), Strand = Minus / Plus Query: 1215 TGGTAGTGCTGTGCCTCCGGTTTTCGACGAGGACACAAAAGATGGAGGATCTTCGTTTTT 1156 || | || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6266 TGCTCCTGGTGTGCCTCCGGTTTTCGACGAGGACACAAAAGATGGAGGATCTTCGTTTTT 6325 Query: 1155 CGATGAAGAGCAAAAACCTGTTTCCGAGGAAAACAGCGATGTGTTTGAAGATGGGGAGAT 1096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6326 CGATGAAGAGCAAAAACCTGTTTCCGAGGAAAACAGCGATGTGTTTGAAGATGGGGAGAT 6385 Query: 1095 GGAGGATGGTGAACTAGAGGGTGATTTGAGTTCGTACCGAGTTTTATCTAGCAAAACGTT 1036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6386 GGAGGATGGTGAACTAGAGGGTGATTTGAGTTCGTACCGAGTTTTATCTAGCAAAACGTT 6445 Query: 1035 AGCTGATGTTGTTGAGGCTTTGATTGGTGTTTATTACGTCGAAGGGGGTAAGATTGCAGC 976 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6446 AGCTGATGTTGTTGAGGCTTTGATTGGTGTTTATTACGTCGAAGGGGGTAAGATTGCAGC 6505 Query: 975 TAATCATTTGATGAAATGGATTGGGATTCACGTGGAGGATGATCCTGATGAAGTCGATGG 916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6506 TAATCATTTGATGAAATGGATTGGGATTCACGTGGAGGATGATCCTGATGAAGTCGATGG 6565 Query: 915 AACATTGAAAAATGTTAATGTTCCAGAGAGTGTGCTCAAGAGCATCAACTTTGTTGGTCT 856 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 6566 AACATTGAAAAATGTTAATGTTCCAGAGAGTGTGCTCAAGAGCATCGACTTTGTTGGTCT 6625 Query: 855 TGAGAGAGCTCTTAAATATGAGTTTAAAGAGAAAGGTCTTCTTGTTGAAGCTATAACACA 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6626 TGAGAGAGCTCTTAAATATGAGTTTAAAGAGAAAGGTCTTCTTGTTGAAGCTATAACACA 6685 Query: 795 TGCTTCAAGACCATCTTCAGGTGTTTCGTGTTACCAGAGATTGGAATTTGTTGGTGACGC 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6686 TGCTTCAAGACCATCTTCAGGTGTTTCGTGTTACCAGAGATTGGAATTTGTTGGTGACGC 6745 Query: 735 GGTCTTGGATCATCTCATCACAAGACATCTATTTTTCACATACACAAGCCTTCCTCCTGG 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6746 GGTCTTGGATCATCTCATCACAAGACATCTATTTTTCACATACACAAGCCTTCCTCCTGG 6805 Query: 675 TCGGKTAACAGATCTTCGAGCTGCAGCGGTTAACAACGAGAATTTTGCTCGCGTTGCGGT 616 ||||+||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6806 TCGGTTAACAGATCTTCGAGCTGCAGCGGTTAACAACGAGAATTTTGCTCGCGTTGCGGT 6865 Query: 615 TAAACATAAACTCCACTTGTACCTTCGTCACGGTTCAAGCGCCCTCGAAAAACAGGTAAA 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6866 TAAACATAAACTCCACTTGTACCTTCGTCACGGTTCAAGCGCCCTCGAAAAACAGGTAAA 6925 Query: 555 CAAGATTAAGAAACAAAGTATATTGTTCTCAAAGAGTTTCAAATGTTTGACTGTTTGGTT 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6926 CAAGATTAAGAAACAAAGTATATTGTTCTCAAAGAGTTTCAAATGTTTGACTGTTTGGTT 6985 Query: 495 ACTTTTTGTTTTTCAGATTCGGGAATTTGTGAAGGAGGTTCAAACCGAGTCATCGAAACC 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6986 ACTTTTTGTTTTTCAGATTCGGGAATTTGTGAAGGAGGTTCAAACCGAGTCATCGAAACC 7045 Query: 435 GGGGTTTAACTCTTTTGGTTTGGGAGACTGCAAAGCACCAAAAGTTCTTGGAGACATTGT 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7046 GGGGTTTAACTCTTTTGGTTTGGGAGACTGCAAAGCACCAAAAGTTCTTGGAGACATTGT 7105 Query: 375 TGAATCTATTGCAGGTGCTATTTTTCTTGATAGTGGAAAAGATACAACTGCTGCTTGGAA 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7106 TGAATCTATTGCAGGTGCTATTTTTCTTGATAGTGGAAAAGATACAACTGCTGCTTGGAA 7165 Query: 315 GGTTAGTTAGTTAGTTATTTCGGTTGAAAATCTCTAACTAACTCGGNNNNNNNNGGAATT 256 ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 7166 GGTTAGTTAGTTAGTTATTTCGGTTGAAAATCTCTAACTAACTCGTTTTTTTTTGGAATT 7225 Query: 255 GTAATTCTTAGCTTACTAAATCGTATGATTCTTTTCCAGGTTTTTCAACCTTTGCTTCAG 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7226 GTAATTCTTAGCTTACTAAATCGTATGATTCTTTTCCAGGTTTTTCAACCTTTGCTTCAG 7285 Query: 195 CCCATGGTGACACCAGAGACACTTCCAATGCATCCGGTGCGAGAGCTACAAGAGCGGTGC 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7286 CCCATGGTGACACCAGAGACACTTCCAATGCATCCGGTGCGAGAGCTACAAGAGCGGTGC 7345 Query: 135 CAGCAACAAGCAGAAGGGTTAGAATACAAAGCGAGTAGGAGTGGTAACACAGCGACTGTG 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7346 CAGCAACAAGCAGAAGGGTTAGAATACAAAGCGAGTAGGAGTGGTAACACAGCGACTGTG 7405 Query: 75 GAAGTTTTCATCGACGGTAAAAGCTAGCTGCGAGGAACGCA 35 |||||||||||||||||| | || || ||| | |||| Sbjct: 7406 GAAGTTTTCATCGACGGTGTT--CAAGTTG-GAGTAGCGCA 7443 >At3g03300 68416.t00296 DEAD/DEAH box helicase carpel factory-related similar to RNA helicase GB:AAF03534 Length = 6808 Minus Strand HSPs: Score = 351 (58.7 bits), Expect = 3.1e-07, P = 3.1e-07 Identities = 326/572 (56%), Positives = 327/572 (57%), Strand = Minus / Plus
Border_2 (16360_LBU)
TCTCTTCAACGAGATGTAGTCATTACATTTTAAACCTTAAAACCATAGTGGTTGTAGTGTTTTAATTGATCTGTTGTTATTCGAGTTTAATTGGTTATAG
AACTCTTCAAACAAATTAAACCAAAAATTTCAATGCCAAGAAAGGGTCTTTAAAACGAAATTACAGAAGGACCAAATGATAAGGAAGAAAAATGCAGAGA
TAAAAGTAATATCAATTAGGATCATATGCTTCTTATTATCAATGAAAAGTAACAGAAACATAGATGCTGCAGAAATCTTCTGAGGAGAAGCTTCAACGCC
TCAGGGTGTGGAGAATGTATTCAGCATAGAGGTCCCTGTAATGGGGAATTCAGAATCCAGAGTTGCTTTAATGTTACAAACTAAAAAAGATGTAAGAGAG
TTTGGTTCTTGATAAAGAAACAGAGACTTACATTGAGTACTGGATAGCTTCAACCGCAGACTCAGATGGCAGAA
| Start of BLAST Alignment: | > 9 / 3`UTR |
| First 15 bp Perfect Match: | > 9 / 3`UTR |
BLAST Details: Query Sequence: 16360_LBU Length: (474 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g01050 68414.t00005 inorganic pyrophosphatase, putativ... 1892 4.8e-81 1 At1g01040 68414.t00004 DEAD/DEAH box helicase carpel fact... 380 2.6e-11 1 At2g46860 68415.t05337 inorganic pyrophosphatase, putativ... 359 1.5e-10 1 At2g37585 68415.t04254 glycosyltransferase family 14 prot... 213 0.081 1 >At1g01040 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 8019 Plus Strand HSPs: Score = 380 (63.1 bits), Expect = 2.6e-11, P = 2.6e-11 Identities = 76/76 (100%), Positives = 76/76 (100%), Strand = Plus / Plus Query: 1 TCTCTTCAACGAGATGTAGTCATTACATTTTAAACCTTAAAACCATAGTGGTTGTAGTGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7944 TCTCTTCAACGAGATGTAGTCATTACATTTTAAACCTTAAAACCATAGTGGTTGTAGTGT 8003 Query: 61 TTTAATTGATCTGTTG 76 |||||||||||||||| Sbjct: 8004 TTTAATTGATCTGTTG 8019 >At2g46860 68415.t05337 inorganic pyrophosphatase, putative [soluble] / pyrophosphate phospho-hydrolase, putative / PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase Length = 1588 Minus Strand HSPs: Score = 359 (59.9 bits), Expect = 1.5e-10, P = 1.5e-10 Identities = 227/370 (61%), Positives = 227/370 (61%), Strand = Minus / Plus