At1g49510 SYNGENTA 16479
Genomic Sequence (from TAIR)
ataactaaaatgtacttaggtctaagccagtaagttcatgtatataacttagaaagtggtcaatttgagcaattctcctcttttccttttgtactctaag aatcaatttgattttggtgatacaaaattaagtatttcattttcagttgtatattgacagaaataaaaaataaatcaattttatattattttatcttaac aagctcacttcagggccggtattgggctgagtaaggagtccaatgaaatatgtgcttcgacccttagattatttattgtttacaaatagacccctttatt ttgtaaaatagtaataagctctcttttttccctgtcgacgatttctctctctctcattaggctcgaaccctctttcactctttgtgtctgttaccaaact ctacccctctctcttatccgctctattcagagaatcttttcttcaatggactttctctgaacactcaaatcgaacagagagtttaataaataaATGGCGA TGTCTCATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGACTTCACTCGACGACCCAGgtaaccatatctctctctcttctcttctacaa aatcttcaaaataactctaccacccagcaaaaaggttgtaacttttcattatttcttcaatgggtctttggattaatgtcaaaaatttccacctttaggt atattggatcaatttcaatcagatagaatagtgaatttagaggttcacaactcttattggatccattaaccatgtaaattacgaatctttc◄cttaggct tatagcaaattactgtttttttgtttaatatgatgaacttgtgtgtggtatgagttgttgatttctctaagttttgtttttgcagTTCACG►TTGAGCTA CTCTAAGAACAATAAAGATTG◄TTCCTTTCAGAGTGCAAATGAAGCTAAAGTATCAAAGAGATCGTTG►CTCTGTCGTGCAATTCATATGGAATCTGGAC ATTCAGGGGAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGAGAACCAAACATGTTTGGGATAATTCTCCACAGCCGGTTAAGGAATTTCCTTG GAATAGAGCATTCGGAAACTTCATACAGCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGTTCGTTCCTATATTGGCGGTTTCTTCCATTAGT GAGATGTCTTATTGTGCTCATGAGAGGAAACTTGCTTTAGTCCCATTTCCATTAGTCATCGGTATGGTTGTCGCTGGCGTTCTACAAGAAACCGCTTTGA AGATCTCGCCTCGTCTTAAGgtagtagaaaagggaactcccttatcttatagattgttatgatagttttaaaattagttcttaagaagactttgttcttg cagGAAGCGGAAGTACCGTGGCATTTGATAGCTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCATATTACCCGTATTGGGGGCGTTTATTAG TTCCACATTTTGCAAATGGAGTATTACTTAGAGCACTTTGGTCCATGTTCTTTTGGTATAAGAAGACTAGAAACACATCAGGAAATCCTCTGCAGAATCA CAGTTTGGAAACAGAATGAgcatcttcatcaaaaggtacactaaatatggttagatagttatgtcaaaatcccatgatgagtacataaacaattagacaa tgttgtttagatatgactttagttgctcgatttatgcatctcagcagttgtttcttttgtaggctggtgttttaaagtgccaagtggtcactttgattag tttcggggattatctggaacctcgtggagtagtgttcgagcatagataggagctttcttcttcttcttttctctcttcaatctcagagaagttgaggtta atgagttaacaacatcttttaggccatagaattgttttgttttgtgttctcttctttggaaaattgtctcagttcttgtgaaaaccgctattctttggat atgtatttgtatcttgagtttttgtttttggtcagacaaaattttatttggtaaactaagtaagaaaccaacccatgattgtacaatttttgactgtgta gacg
Border_1 (16479_LB1U)
CACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATA
TCCTGCAAAAACAAAACTTAGAGAACTCAACAACTCATATCACACACAAGTTCATTATTTAAAAAACAGTAATATGCCTAATGAAAGATTCGTAATTTAC
ATGGTTAATGGATCCAATAAGAGATGTGAACCTCTAAATTCACTATTCTATCTGATTGAAATTGATCCAATATACCTAAAGGTGGAAATTTTTGACATTA
ATCCAAAGACCCATTGAAGAAATAATGAAAAGTTACAACCTTTTTGCTGGGTGGTAGAGTTATTTTGAAGATTTTGTAGAAGAGAAGAGAGAGAGATATG
GTTACCTGGGTCGTCGAGTGAAGTCGCAGAGCCAGTGAAGATTGAGGCGAAGAAGAAAGAAAGAGATGAGACATCGCCATTTTTTCTAAGACTCTCTGTT
TGATTTTAGTTTTCAGAGAAAGTCCATTGAAAAGATTCTCTGAATAGAGCGGATAAGAGAGAGGGGTAGAGTTTGGTAACAGACACAAAGAGGGTTCGAG
CCTAATGAGAGAGAAAGAGAAATCGTCGACAGGGAATAAAAAGAGCTTATTATTATTATAAAAACATAAAGGGGTCTATTTGTAAACAATAAATAATCTG
AGGGTCGAAGCACATATTCATTGGACTCTTACTCAGCCAATACCGGCCTGAAGTGAGCTTGTWAGAAWAAAWATATAAAATGGATTATTTTTATTCTGC
| Start of BLAST Alignment: | NT 426 / Exon 2 of 3 |
| First 15 bp Perfect Match: | NT 298 / Intron 1 of 3 |
BLAST Details: Query Sequence: 16479_LB1U Length: (799 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g49510 68414.t05078 expressed protein 1834 2.4e-78 1 At2g01930 68415.t00108 expressed protein 232 0.038 1 At1g66670 68414.t06946 ATP-dependent Clp protease proteol... 209 0.40 1 At3g21730 68416.t02452 dihydroneopterin aldolase family p... 202 0.65 1 >At1g49510 68414.t05078 expressed protein Length = 1644 Minus Strand HSPs: Score = 1834 (281.2 bits), Expect = 2.4e-78, P = 2.4e-78 Identities = 460/547 (84%), Positives = 460/547 (84%), Strand = Minus / Plus Query: 584 GTCTGTTACCAAACTCTACCCCTCTCTCTTATCCGCTCTATTCAGAGAATCTTTTC---A 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1 GTCTGTTACCAAACTCTACCCCTCTCTCTTATCCGCTCTATTCAGAGAATCTTTTCTTCA 60 Query: 527 ATGGACTTTCTCTGAAAACTAAAATCAAACAGAGAGTCTTAGAAA-AAATGGCGATGTCT 469 |||||||||||||||| ||| ||||| |||||||||| | | ||| |||||||||||||| Sbjct: 61 ATGGACTTTCTCTGAACACTCAAATCGAACAGAGAGTTTAATAAATAAATGGCGATGTCT 120 Query: 468 CATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGACTTCACTCGACGACC 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CATCTCTTTCTTTCTTCTTCGCCTCAATCTTCACTGGCTCTGCGACTTCACTCGACGACC 180 Query: 408 CAGGTAACCATANNNNNNNNNNNNNNNNNNNACAAAATCTTCAAAATAACTCTACCACCC 349 |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 181 CAGGTAACCATATCTCTCTCTCTTCTCTTCTACAAAATCTTCAAAATAACTCTACCACCC 240 Query: 348 AGCAAAAAGGTTGTAACTTTTCATTATTTCTTCAATGGGTCTTTGGATTAATGTCAAAAA 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 AGCAAAAAGGTTGTAACTTTTCATTATTTCTTCAATGGGTCTTTGGATTAATGTCAAAAA 300 Query: 288 TTTCCACCTTTAGGTATATTGGATCAATTTCAATCAGATAGAATAGTGAATTTAGAGGTT 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 TTTCCACCTTTAGGTATATTGGATCAATTTCAATCAGATAGAATAGTGAATTTAGAGGTT 360 Query: 228 CACATCTCTTATTGGATCCATTAACCATGTAAATTACGAATCTTTCATTAGGCATATTAC 169 |||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| | Sbjct: 361 CACAACTCTTATTGGATCCATTAACCATGTAAATTACGAATCTTTCCTTAGGCTTAT-A- 418 Query: 168 TGTTTTTTAAATAATGAACTTGTGTGTGATATGA-GTTGTTGAGT-TC-TCTAAGTT-TT 113 | || || || || ||| | |||||| | ||| || | | | |||| || Sbjct: 419 -GCA----AATTACTGTTTTTTTGTTTAATATGATGAACTTGTGTGTGGTATGAGTTGTT 473 Query: 112 GTTTTTGC-AGGATATATTGTGGT-GTAAACAAATTGA-CG-CT-TAGACAACTTAATAA 58 | ||| | | | | | || | | || || |||| | || || | ||| ||||| Sbjct: 474 GATTTCTCTAAGTTTTGTTTTTGCAGTTCACG--TTGAGCTACTCTA-AGAAC--AATAA 528 Query: 57 CACATTG 51 | |||| Sbjct: 529 -AGATTG 534 >At2g01930 68415.t00108 expressed protein Length = 1681 Minus Strand HSPs: Score = 232 (40.9 bits), Expect = 0.039, P = 0.038 Identities = 344/628 (54%), Positives = 344/628 (54%), Strand = Minus / Plus
Border_2 (16479_LB2D)
MYCRAAWTSRAYKGCGGYGTTAAYYCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCTTCATTAANAGTNCATATG
AAGCTAACGTACCAAAGAGATCATTCCTCTGTCGTGCAATTCATATGGAATCTGGACATTCAGGGGAACAACAACAACCAAAGAAGCTTAATTTCGATAA
TCTGTTGAGGAGAACCAAAGATGTTTGGGATAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAGCTTTCGGAAACTTCATACAGCTCGTTCTT
GATCTCGCTATATCAGTCGTTAAGTTCTTGTTCGTTCCTATATTGGCGGNTTCTTCCATTAGTGAGATGNCTTATTGNGCTCATGAGAGGAAACTTGCTT
TAGTCCCGTTTCCGTTAGTCATCGGTATGGNTGTTGCTGGCGTTCTTCAAGAAACCGCTTTGAAGATCTCGCCTCGTCTTAAGGTAGTAGAAAAGGGAAA
TCCCTTATCTTATAGATTGTNGTGATAGTTTTTAAAATTCGNTCTTAANAAGACTTTGTTCTTGCAGGAAGCGGAAGNACCGTGGCATTTGATAACTATG
ATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCGTTTTACCCGTATNGGGGGCGTTTATTAGTTCCACATTTTGCAAATGGAGTATTGGTTAGAGCAC
TTNGGTCCATGTTCTTTTGGTNTAAGAAGACCTANCAAACACATCAGGNAATCCCNCTGCAGAAATCACAGCTT
| Start of BLAST Alignment: | NT 397 / Exon 2 of 3 |
| First 15 bp Perfect Match: | NT 472 / Exon 2 of 3 |
BLAST Details: Query Sequence: 16479_LB2D Length: (774 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g49510 68414.t05078 expressed protein 2992 1.2e-130 1 >At1g49510 68414.t05078 expressed protein Length = 1644 Plus Strand HSPs: Score = 2992 (455.0 bits), Expect = 1.2e-130, P = 1.2e-130 Identities = 662/724 (91%), Positives = 662/724 (91%), Strand = Plus / Plus Query: 56 TTAAGTTG-TCTAAG--CG-TCAAT-TTGTCTTCATTAANAGTNCATATGAAGCTAACGT 110 || || | |||||| | | || |||| | | || | ||| || |||||||||| || Sbjct: 506 TTGAGCTACTCTAAGAACAATAAAGATTGT-TCCTTTCAGAGTGCAAATGAAGCTAAAGT 564 Query: 111 ACCAAAGAGATCATTCCTCTGTCGTGCAATTCATATGGAATCTGGACATTCAGGGGAACA 170 | |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 ATCAAAGAGATCGTTGCTCTGTCGTGCAATTCATATGGAATCTGGACATTCAGGGGAACA 624 Query: 171 ACAACAACCAAAGAAGCTTAATTTCGATAATCTGTTGAGGAGAACCAAAGATGTTTGGGA 230 || ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 625 AC------CAAAGAAGCTTAATTTCGATAATCTGTTGAGGAGAACCAAACATGTTTGGGA 678 Query: 231 TAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAGCTTTCGGAAACTTCATACA 290 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 679 TAATTCTCCACAGCCGGTTAAGGAATTTCCTTGGAATAGAGCATTCGGAAACTTCATACA 738 Query: 291 GCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGTTCGTTCCTATATTGGCGGN 350 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 GCTCGTTCTTGATCTCGCTATATCAGTCGTTAAGTTCTTGTTCGTTCCTATATTGGCGGT 798 Query: 351 TTCTTCCATTAGTGAGATGNCTTATTGNGCTCATGAGAGGAAACTTGCTTTAGTCCCGTT 410 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || Sbjct: 799 TTCTTCCATTAGTGAGATGTCTTATTGTGCTCATGAGAGGAAACTTGCTTTAGTCCCATT 858 Query: 411 TCCGTTAGTCATCGGTATGGNTGTTGCTGGCGTTCTTCAAGAAACCGCTTTGAAGATCTC 470 ||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| Sbjct: 859 TCCATTAGTCATCGGTATGGTTGTCGCTGGCGTTCTACAAGAAACCGCTTTGAAGATCTC 918 Query: 471 GCCTCGTCTTAAGGTAGTAGAAAAGGGAAATCCCTTATCTTATAGATTGTNGTGATAGTT 530 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 919 GCCTCGTCTTAAGGTAGTAGAAAAGGGAACTCCCTTATCTTATAGATTGTTATGATAGTT 978 Query: 531 TTTAAAATTCGNTCTTAANAAGACTTTGTTCTTGCAGGAAGCGGAAGNACCGTGGCATTT 590 || |||||| | |||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct: 979 TT-AAAATTAGTTCTTAAGAAGACTTTGTTCTTGCAGGAAGCGGAAGTACCGTGGCATTT 1037 Query: 591 GATAACTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCGTTTTACCCGTATNG 650 |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| | Sbjct: 1038 GATAGCTATGATGATGTTCTTCACTCTGATTAAGCTTCCTGGACCATATTACCCGTATTG 1097 Query: 651 GGGGCGTTTATTAGTTCCACATTTTGCAAATGGAGTATTGGTTAGAGCACTTNGGTCCAT 710 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1098 GGGGCGTTTATTAGTTCCACATTTTGCAAATGGAGTATTACTTAGAGCACTTTGGTCCAT 1157 Query: 711 GTTCTTTTGGTNTAAGAAGACCTANCAAACACATCAGGNAATCCCNCTGCAGAAATCACA 770 ||||||||||| ||||||||| || |||||||||||| ||||| |||||||| ||||| Sbjct: 1158 GTTCTTTTGGTATAAGAAGAC-TAG-AAACACATCAGGAAATCC-TCTGCAGAA-TCACA 1213 Query: 771 GCTT 774 | || Sbjct: 1214 GTTT 1217