At4g26500 SYNGENTA 16547
Genomic Sequence (from TAIR)
aaaaaaacggagatgcagtttctttctgtggaagtagacagaaacaatagaatctcagataagaaagggacagttttttaatttgattaaatttgataaa agtgtttttatttaatttaatttaattgcttacattggtaaaagctggattcggacatgattgatttgatatataataatggcggacgtgtttgaggtga cgaacgcaagagaacgaagaaccaggaagacgatgcttcaaaacaaaacaaaaaaaatctagatatctttttcttttccttatttatgaaaagagtcgta tactttctaattattcataatcaaccccacaattgattttacatctaatttttggattttggtacattcccggtttaattcccggttactacctaattgg cggtattggtttttgactcagaaaaagtgaagaaggagagcttt◄catca◄tcatctcagtctctctcgaagtttcaagttcgcgactATGGCAG►CAGC GATGTCTTCTTCTTGTTGCGCTTCCTCGCTTCGTTTAATCCCATT►CAAACGGACCTTGTTTTCTTCAATCCATTATCCGGCCAAAACCCTTCTTCTACG ACCACTAAAACCGTCGGAAGTTCCTTCCTTTCGCCGGACGATCATCACTTTCCAGAAAATTTCAACCGGGATTGTTCCTCCACCATCGGCTTCATCATCT CCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAGCTTCCACCGAAGCTACAAGAGATCGTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAAT ACGAGCAGCTTATGTTCTACGGGAAGAATCTGACACCTCTCGATTCTCAATTCAAGACGAGGGAGAATAAAGTAGAAGGATGTGTTTCTCAGGTTTGGGT TAGGGCTTTCTTTGATGAGGAACGTAATGTTGTGTATGAAGCTGATTCTGATTCGGTTCTCACTAAAGGGTTAGCTGCTCTATTAGTCAAGGGTTTATCT GGAAGACCTGTCCCTGAGATTTTGAGGATAACACCTGATTTCGCTGTTCTTCTCGGGTTGCAGCAGAGTCTGTCTCCTTCTAGAAACAATGGATTACTTA ATATGCTTAAGCTGATGCAGAAAAAGGCTCTTCATTTGGAAGTCAAAGGTGAGGAAGATTCAAGTTCTGGAGAGAGTTCAGAATCCAGCTTTGTGTCTAT TCCTGAGACTAAGGACGAAGCTAATGTTCCGGAGGTGGATTTGGAGTCTAAACCTGATCTAGTTGAGGATTTGGGAACAGAAAAGATTGATGATTCTGAG AGTGGGTCAAATGTTGTTGCTTTAGGGAGTAGAGGGATGAGGATAAGAGAGAAATTGGAGAAGGAGCTAGATCCTGTTGAGTTAGAAGTTGAAGATGTTT CTTACCAGCACGCAGGACATGCCGCTGTTAGAGGTAGTGCTGGTGATGATGGGGAAACACATTTCAACTTGCGAATCGTTTCGGATGCTTTCCAAGGTAA AAGCTTGGTCAAGAGACATAGGCTGATATATGACTTGTTGCAAGATGAGTTGAAGAGCGGGTTACATGCTCTCTCTATTGTGGCAAAGACTCCTGCTGAG GTTTGAgggtgtaacattggaagaagtcaggtcctgattcttttacttcttttggtccatttgctttggatattgttctctggaccttctaataatgtta agagctcgatcaggattgtgttaaatgagagatagatattgaaggatataaataatgttttcgccaatcgccacatgattcaccattttcaaactgattt ccctttatcttatgagggtcaaggtcttttttgttttgatatggtttcctgatattaagttttgtacctacgctttgagagatgaatagagagaatgctc aaggttgttgtccatttggctaagtttgaatcgttagaaagatcacagcacctagggaaagcgaaaaaggaatttggggagaaaaatggtactatattca tgccaccattagacatgcgaagtttcttgttcattttttaattcttctagaatctagatactcaaagtt
Border_1 (16547_RBU)
ACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCTCGAAATTAA
CCCTCATTAAAGCTCTCCTTCTTCACTTTTTCTGAGTCAAAAACCAATACCGCCAATTAGGTAGTAACCGGGAATTAAACCGGGAATGTACCAAAATCCA
AAAATTAGATGTAAAATCAATTGTGGGGTTGATTATGAATAATTAGAAAGTATACGACTCTTTTCATAAATAAGGAAAAGAAAAAGATATCTAGATTTTT
TTTGTTTTGTTTTGAAGCATCGTCTTCCTGGTTCTTCGTTCTCTTGCGTTCGTCACCTCAAACACGCTCCGCCATTATTATATATCAAATCAATCATGTC
CGAATCCAGCTTTTACCAATGTAAGCAATTAAATTAAATTAAATAAAAACACTTTTATCAAATTTAATCAAATTAAAAAACTGTCCCTTTCTTATCTGAG
ATTCTATTGTTTCTGTCTACTTCCACAGAAAGAAACTGCATCTCCGTTTTTTTTTCTGATTTGAGGCTKYYYTYMKWWSMTYSWKRRSARMAMWRMWKMW
KSKKRRTWWTWWWAAWMWYMTYWTTWYKACGACTTATCTCTTTTTGAACGATCTGTTTTTTCATGTAAGTACGATTTCACCTCGAGATGATCGATCATTG
CTCTTCTGGTTCTTCCATGTTTGATTAAATGTTATAACTTGAGGGTTTTGTTTCTTTTGGATTGTTCTCGCATTTGTTGATCTATGGTTATCAAAAGAGT
TTGGATTTACAGTTTTTGGTTGCAGCTGAAGTTTTTCACTCTTTTCTTCTCTGTTTTGCTGGATAAAGTTGGATTTGATTCACATTGTTGTTTAGAATCT
AGATGAAGTTGTAAGATTCCTTGTATTGTGTTTGCTTATGCATGATTGTGATAAAGATTTAAGTTATTTTACCAATGTACAATGTCCAGAATTGTCGTCG
GGATGGGTTCTAAGTCCGTTGTTGACATGATCGAAGCTGCCTCGCGGGCACATTTTTCTGGTTTACACGTGAATGGGCACATGAATGGGTTGGAACCAAG
TGCACTTAAGGAAACCACTTCTGCATCAGAAGATATCCAAAGACAGCCTTTTGTAATAGGTGAGTTCTGCCTATGCTACTCCACT
| Start of BLAST Alignment: | NT < 37 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 42 / 5’ UTR |
BLAST Details: Query Sequence: 16547_RBU Border #1 Length: (1185 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T15N24 67161 4507 2.0e-197 1 M3E9 67160 4492 9.6e-197 1 T6C20 68339 462 3.3e-12 1 T2P3 68413 455 7.2e-12 1 T15N24 67161 Length = 92,657 Plus Strand HSPs: Score = 4507 (682.3 bits), Expect = 2.0e-197, P = 2.0e-197 Identities = 937/1074 (87%), Positives = 983/1074 (91%), Strand = Plus / Plus Query: 104 TCATTAAAGCTCTCCTTCTTCACTTTTTCTGAGTCAAAAACCAATACCGCCAATTAGGTA 163 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12651 TGATGAAAGCTCTCCTTCTTCACTTTTTCTGAGTCAAAAACCAATACCGCCAATTAGGTA 12710 Query: 164 GTAACCGGGAATTAAACCGGGAATGTACCAAAATCCAAAAATTAGATGTAAAATCAATTG 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12711 GTAACCGGGAATTAAACCGGGAATGTACCAAAATCCAAAAATTAGATGTAAAATCAATTG 12770 Query: 224 TGGGGTTGATTATGAATAATTAGAAAGTATACGACTCTTTTCATAAATAAGGAAAAGAAA 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12771 TGGGGTTGATTATGAATAATTAGAAAGTATACGACTCTTTTCATAAATAAGGAAAAGAAA 12830 Query: 284 AAGATATCTAGANNNNNNNNNNNNNNNNNNGAAGCATCGTCTTCCTGGTTCTTCGTTCTC 343 |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 12831 AAGATATCTAGATTTTTTTTGTTTTGTTTTGAAGCATCGTCTTCCTGGTTCTTCGTTCTC 12890 Query: 344 TTGCGTTCGTCACCTCAAACACGCTCCGCCATTATTATATATCAAATCAATCATGTCCGA 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12891 TTGCGTTCGTCACCTCAAACACGCTCCGCCATTATTATATATCAAATCAATCATGTCCGA 12950 Query: 404 ATCCAGCTTTTACCAATGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 463 |||||||||||||||||||||| Sbjct: 12951 ATCCAGCTTTTACCAATGTAAGCAATTAAATTAAATTAAATAAAAACACTTTTATCAAAT 13010 Query: 464 NNNNNNNNNNNNNNNNNCTGTCCCTTTCTTATCTGAGATTCTATTGTTTCTGTCTACTTC 523 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13011 TTAATCAAATTAAAAAACTGTCCCTTTCTTATCTGAGATTCTATTGTTTCTGTCTACTTC 13070 Query: 524 CACAGAAAGAAACTGCATCTCCGNNNNNNNNNCTGATTTGAGGCTKYYYTYMKWWSMTYS 583 ||||||||||||||||||||||| |||||||||||||++++|+++++++|++ Sbjct: 13071 CACAGAAAGAAACTGCATCTCCGTTTTTTTTTCTGATTTGAGGCTTTCCTTAGATCCTTG 13130 Query: 584 WKRRSARMAMWRMWKMWKSKKRRTWWTWWWAAWMWYMTYWTTWYKACGACTTATCTCTTT 643 +++++|++|++++++++++++++|++|+++||+++++|++|| ||||||||||||||| Sbjct: 13131 AGAGCAAAACTGAATCTGGGTAATTTTAAAAATCTCATTTTT---ACGACTTATCTCTTT 13187 Query: 644 TTGAACGATCTGTTTTTTCATGTAAGTACGATTTCACCTCGAGATGATCGATCATTGCTC 703 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13188 T-GAACGATCTGTTTTTTCATGTAAGTACGATTTCACCTCGAGATGATCGATCATTGCTC 13246 Query: 704 TTCTGGTTCTTCCATGTTTGATTAAATGTTATAACTTGAGGGTTTTGTTTCTTTTGGATT 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13247 TTCTGGTTCTTCCATGTTTGATTAAATGTTATAACTTGAGGGTTTTGTTTCTTTTGGATT 13306 Query: 764 GTTCTCGCATTTGTTGATCTATGGTTATCAAAAGAGTTTGGATTTACAGTTTTTGGTTGC 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13307 GTTCTCGCATTTGTTGATCTATGGTTATCAAAAGAGTTTGGATTTACAGTTTTTGGTTGC 13366 Query: 824 AGCTGAAGTTTTTCACTCTTTTCTTCTCTGTTTTGCTGGATAAAGTTGGATTTGATTCAC 883 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13367 AGCTGAAATTTTTCACTCTTTTCTTCTCTGTTTTGCTGGATAAAGTTGGATTTGATTCAC 13426 Query: 884 ATTGTTGTTTAGAATCTAGATGAAGTTGTAAGATTCCTTGTATTGTGTTTGCTTATGCAT 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13427 ATTGTTGTTTAGAATCTAGATGAAGTTGTAAGATTCCTTGTATTGTGTTTGCTTATGCAT 13486 Query: 944 GATTGTGATAAAGATTTAAGTTATTTTACCAATGTACAATGTCCAGAATTGTCGTCGGGA 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13487 GATTGTGATAAAGATTTAAGTTATTTTACCAATGTACAATGTCCAGAATTGTCGTCGGGA 13546 Query: 1004 TGGGTTCTAAGTCCGTTGTTGACATGATCGAAGCTGCCTCGCGGGCACATTTTTCTGGTT 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13547 TGGGTTCTAAGTCCGTTGTTGACATGATCGAAGCTGCCTCGCGGGCACATTTTTCTGGTT 13606 Query: 1064 TACACGTGAATGGGCACATGAATGGGTTGGAACCAAGTGCACTTAAGGAAACCACTTCTG 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13607 TACACGTGAATGGGCACATGAATGGGTTGGAACCAAGTGCACTTAAGGAAACCACTTCTG 13666 Query: 1124 CATCAGAAGATATCCAAAGACAGCCTTTTGTAATAGGTGAGTTCTGCCTATGCT 1177 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 13667 CATCAGAAGATATCCAAAGACAGCCTTTTGTAATAGGTGAGTTCTGCTTTTGCT 13720 M3E9 67160 Length = 80,677 Plus Strand HSPs: Score = 4492 (680.0 bits), Expect = 9.6e-197, P = 9.6e-197 Identities = 936/1074 (87%), Positives = 982/1074 (91%), Strand = Plus / Plus
Border_2 (16547_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAAACGGA
CCTTGTTTTCTTCAATCCATTATCCGGCCAAAACCCTTCTTCTACGACCACTAAAACCGTCGGAAGTTCCTTCCTTTCGCCGGACGATCATCACTTTCCA
GAAAATTTCAACCGGGATTGTTCCTCCACCATCGGCTTCATCATCTCCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAGCTTCCACCGAAGCTACAA
GAGATCGTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAATACGAGCAGCTTATGTTCTACGGGAAGAATCTGACACCTCTCGATTCTCAATTCA
AGACGAGGGAGAATAAAGTAGAAGGATGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTTGATGAGGAACGTAATGGTGTGTATGAAGCTGATTCTGATTC
GGTCTCACTAAAGGGTTAGCTGCTCTATTAGCAAGGGTTATCTGGAAGACCTGTCCTGAGAATTTGAGGATAACACCTGATTTCGCTGTCTTCTCTG
| Start of BLAST Alignment: | NT 7 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 56 / Exon 1 of 1 |
BLAST Details: Query Sequence: 16547_LBD Length: (697 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g26500 68417.t03546 BolA-like family protein / Fe-S me... 2479 2.0e-107 1 >At4g26500 68417.t03546 BolA-like family protein / Fe-S metabolism associated domain-containing protein similar to SufE protein [Erwinia chrysanthemi] GI:11342550; contains Pfam profiles PF02657: Fe-S metabolism associated domain, PF01722: BolA-like protein Length = 1444 Plus Strand HSPs: Score = 2479 (378.0 bits), Expect = 2.0e-107, P = 2.0e-107 Identities = 531/560 (94%), Positives = 531/560 (94%), Strand = Plus / Plus Query: 147 CCGCAATGTGTTATTAA-GTTGTCTAAGCGTCAATTTGTTTACACC-A--CAAACGGACC 202 | || |||| || || |||| | | || || ||||| || | |||||||||| Sbjct: 78 CAGCGATGTCTTCTTCTTGTTG-CGCTTCCTCGCTTCGTTTAATCCCATTCAAACGGACC 136 Query: 203 TTGTTTTCTTCAATCCATTATCCGGCCAAAACCCTTCTTCTACGACCACTAAAACCGTCG 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 TTGTTTTCTTCAATCCATTATCCGGCCAAAACCCTTCTTCTACGACCACTAAAACCGTCG 196 Query: 263 GAAGTTCCTTCCTTTCGCCGGACGATCATCACTTTCCAGAAAATTTCAACCGGGATTGTT 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 GAAGTTCCTTCCTTTCGCCGGACGATCATCACTTTCCAGAAAATTTCAACCGGGATTGTT 256 Query: 323 CCTCCACCATCGGCTTCATCATCTCCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAG 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 CCTCCACCATCGGCTTCATCATCTCCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAG 316 Query: 383 CTTCCACCGAAGCTACAAGAGATCGTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCT 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 CTTCCACCGAAGCTACAAGAGATCGTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCT 376 Query: 443 AAATACGAGCAGCTTATGTTCTACGGGAAGAATCTGACACCTCTCGATTCTCAATTCAAG 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 AAATACGAGCAGCTTATGTTCTACGGGAAGAATCTGACACCTCTCGATTCTCAATTCAAG 436 Query: 503 ACGAGGGAGAATAAAGTAGAAGGATGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTTGAT 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 ACGAGGGAGAATAAAGTAGAAGGATGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTTGAT 496 Query: 563 GAGGAACGTAATGGTGTGTATGAAGCTGATTCTGATTCGGT-CTCACTAAAGGGTTAGCT 621 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 497 GAGGAACGTAATGTTGTGTATGAAGCTGATTCTGATTCGGTTCTCACTAAAGGGTTAGCT 556 Query: 622 GCTCTATTAG-CAAGGGTT-ATCTGGAAGACCTGTCC-TGAGAATTTGAGGATAACACCT 678 |||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| Sbjct: 557 GCTCTATTAGTCAAGGGTTTATCTGGAAGACCTGTCCCTGAGATTTTGAGGATAACACCT 616 Query: 679 GATTTCGCTGT-CTTCTCTG 697 ||||||||||| |||||| | Sbjct: 617 GATTTCGCTGTTCTTCTCGG 636