At5g48230 SYNGENTA 16713
Genomic Sequence (from TAIR)
gcaattattttcaaatatatatttgctatcaatgatgatttatgtagaagaaggggttgatacagtaatttaacaataatttattttaaaacatttaaag agtttgaagtacagataatttttattttattttttgaaagacagatcatatagcagtcgtgttgctcttcatcgtagttatcgtcgctgattcaccaaca acaacaacatcacaagaaagcgtcctcttttataggaccctctgtccctgtttctctctccagttttattgtagaattcgctgtcattttcacaacgact cacttctttcagctctctccattcggcgctctcttctggaattgaagaatcaaggtaaatgatcccacatagatcccaaatgtttataggggatctggtt cttaatgagattggtcccttgttgacttttgacaccattttgtagattagcaatggcccatacatcagaatctgtgaatcctagaggtaacaaaacactt tcattagtaaactgaatttgaaggatgaattttttttttgatatATGAATGTTGATGAATCAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGG TGGCTTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGgtattaaaaaacagttcatgtttctgtgcaaaatcttt agctttatgtataattgacgagcccttgttgttgtttttaatgatttagCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCT TTGGCAATGTTCTTAGTGCTAATTTGGGTCAAGCTCCTGCTCGTCAAGCTGCTTTAGGTGCAGGAATCCCTAACTCTGTTATCTGTACTACAGTTAACAA GGTTTGTGCATCAGGCATGAAAGgtgagaactttggaacatttgcgctctgcattttttagacttttgatttgatgcttttgacaatgtttttctggttt gtttggtggtttttcagCGGTAATGATTGCTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCATGTCTAATACA CCAAAATATTTGGCAGAAGCAA◄Ggtaaaatga►tgtggttttacggaat►catttggtctttttactctatgcatcattgtttcttattcggattttga tgcagGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGATGGACTATGGGATGTCTATAACGACTGTGGGATGGGAAGCTGTG CAGAATTATGCGCTGAGAAGTTTCAGATTACAAGGGAGCAGCAAgtatgttgatccttagttttcttgaattaagactcgtgatgcttgttgcatatttg taccccatcaacttattattgatagatactctgcatacatcctctgtacaattccactgccttgatcattagccatctgtgaactactagaattggttag ttgggctcattctttatggaaactcaaaacatgagttgattggtgtcttactgatgaatatgcagGATGACTATGCAGTTCAGAGTTTTGAGCGTGGTAT TGCTGCCCAGGAAGCTGGCGCCTTCACATGGGAAATCGTCCCGgttagtatattttttgtaatttttggttaatgcgttatacatggtgaatatatacta aggtaattggttatgcagGTTGAAGTTTCTGGAGGAAGAGGTAGGCCATCAACCATTGTTGACAAGGACGAAGGTCTTGGGAAGgtgatttatgtcccct tttggtttaacgattatgcatttatactccagtgaacctgagattgtgctttttcatgttattcacctgttgcatacagattgttttctaagtgaacttt gctgaacaatagagtatttgcattgactactgttttgagaaaattctattcatgtttatgttttcagtcataaatttttattcatttgtatcttctactg tatgaggcattacacgtcagcaaatgaaacttgtggttaagataactccaaaaaatgagatctaatttagtatgatttgctacatgtatgatgtctcaat gtctcagTTTGATGCTGCAAAATTGAGGAAACTCCGTCCTAGTTTCAAAGAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAGgtccttt tcctagctgaccatatatatgttcttagcttttagagaactcatgtaacgtatgaagtggatcttggttagatttgcaacttttttttctctttagtaaa ttttgtctctctttgacagTGATGGTGCAGCTGCCCTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATTAAAGG GTATGGTGACGCAGCTCAGgtacgttacttataatcttgcattccctttttgaatacaatctgattccattcactaagtgagacccaaaccctgcagGAA CCAGAGTTTTTCACTACTGCTCCTGCTCTTGCTATACCAAAAGCCATTGCACATGCTGGTTTGGAATCTTCTCAAGTTGATTACTATGAGATCAATGAAG CATTTGCAgtaagaacatctgtcttcttccttacataattgacaaaccattgtgatgcgtaatttttactaaactgacttttcacagGTTGTAGCACTTG CAAATCAAAAGCTACTCGGGATTGCTCCAgtaagtcttttatatcaccgagtctgttaaatcatcatcttctcaatcaacttaatcaagtggtttcataa acatggattttgttcctctttgcctaaacagGAGAAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGCTGCAGTGGCGCCCGTATT CTAATCACGTTGCTTGGGATACTAAAGAAGAGAAACGGAAAGTACGGTGTGGGAGGAGTGTGCAACGGAGGAGGAGGTGCTTCTGCTCTAGTTCTTGAGC TCCTTTGAtgcattatgaatccaggtaactcacattctgcttagcgttcatagatcgaagatgtagaatgcaggaaaggaactcatgatctcctctcatg tgttttcttctcaggttggtaaactaaatagatggatctatctctcatccaacttccatgagtcagtcattgcactttacgttttatgttagttggtctc tcaataaaggagtgatcgttgatgttgttaagtctatttatttatatgaactcggcttctttttttctcttaccggtgacagtcagttattgaatcatgg accgatttaccgtagttaatgatttatcctcatgtactcattaaaacgtcgaccaagatttgacatttgatggataaatttaagtacacaatgtgtatgt aagacaagaaaataataataattggacatttctgtaaaggcacaagcctctgcgcacttgagcggcacttaagaagaaaaaaagagacttcaatgaagat tttctctatacaaaaagtttctactcggaatttactctgagacatctcttccaaatagggtgctgattgccttcccgggatcgctttgtttaataagag
Border_1 (16713_LBU)
CAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGCTTCTGCCAAATATTTTGGTGTATTAGACATGCTTTCCATACCACCCGCCACAACTACATCATTGA
TCCCTAACTGGATACTTTGAGCAGCAATCATTACCGCTGAAAAACCACCAAACAAACCAGAAAAACATTGTCAAAAGCATCAAATCAAAAGTCTAAAAAA
TGCAGAGCGCAAATGTTCCAAAGTTCTCACCTTTCATGCCTGATGCACAAACCTTGTTAACTGTAGTACAGATAACAGAGTTAGGGATTCCTGCACCTAA
AGCAGCTTGACGAGCAGGAGCTTGACCCAAATTAGCACTAAGAACATTGCCAAAGACAACTTCTTGAACAAGAGCTGGATCAACATTTGCTCTCTTCAAA
GCAGCTAAATCATTAAAAACAACAACAAGGGCTCGTCAATTATACATAAAGCTAAAGATTTTGCACAGAAACATGAACTGTTTTTTAATACCTGCAATAG
CTAAAGGATCCAAGCTTT:GTGGCAGGTAAAGATGAAAGAG:ATCCGAGAAAG:CCCCCATTGGAGTACGTGCAACACCCACAATGCAAACATCTGATTC
ATCAACATTCATATATCAAAAAAAAAATTCATCCTTCAAATTCAGTTTACTAATGAAAGGGGTTTGGGTCCTT
| Start of BLAST Alignment: | NT 578 / Exon 3 of 11 |
| First 15 bp Perfect Match: | NT 578 / Exon 3 of 11 |
BLAST Details: Query Sequence: 16713_LBU Length: (670 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g48230 68418.t05534 acetyl-CoA C-acyltransferase, puta... 2693 1.8e-117 1 At5g47720 68418.t05477 acetyl-CoA C-acyltransferase, puta... 895 8.0e-35 1 At5g09620 68418.t01009 octicosapeptide/Phox/Bem1p (PB1) d... 179 0.9998 1 >At5g48230 68418.t05534 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase Length = 3515 Minus Strand HSPs: Score = 2693 (410.1 bits), Expect = 1.8e-117, P = 1.8e-117 Identities = 571/639 (89%), Positives = 571/639 (89%), Strand = Minus / Plus Query: 669 AGGACCCAAACCCCTTTCATTAGTAAACTGAATTTGAAGGATGAANNNNNNNNNNGATAT 610 ||| |||| | |||||||||||||||||||||||||||||||| ||||| Sbjct: 440 AGGTAACAAAACACTTTCATTAGTAAACTGAATTTGAAGGATGAATTTTTTTTTTGATAT 499 Query: 609 ATGAATGTTGATGAATCAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGG-GGC 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 500 ATGAATGTTGATGAATCAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGC 559 Query: 550 TTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCCTTTAGCTATTGCAGG 491 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 560 TTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATC-TTTAGCTATTGCAGG 618 Query: 490 TATTAAAAAACAGTTCATGTTTCTGTGCAAAATCTTTAGCTTTATGTATAATTGACGAGC 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 TATTAAAAAACAGTTCATGTTTCTGTGCAAAATCTTTAGCTTTATGTATAATTGACGAGC 678 Query: 430 CCTTGTTGTTGTTTTTAATGATTTAGCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCT 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 679 CCTTGTTGTTGTTTTTAATGATTTAGCTGCTTTGAAGAGAGCAAATGTTGATCCAGCTCT 738 Query: 370 TGTTCAAGAAGTTGTCTTTGGCAATGTTCTTAGTGCTAATTTGGGTCAAGCTCCTGCTCG 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 TGTTCAAGAAGTTGTCTTTGGCAATGTTCTTAGTGCTAATTTGGGTCAAGCTCCTGCTCG 798 Query: 310 TCAAGCTGCTTTAGGTGCAGGAATCCCTAACTCTGTTATCTGTACTACAGTTAACAAGGT 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 799 TCAAGCTGCTTTAGGTGCAGGAATCCCTAACTCTGTTATCTGTACTACAGTTAACAAGGT 858 Query: 250 TTGTGCATCAGGCATGAAAGGTGAGAACTTTGGAACATTTGCGCTCTGCATTTTTTAGAC 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 859 TTGTGCATCAGGCATGAAAGGTGAGAACTTTGGAACATTTGCGCTCTGCATTTTTTAGAC 918 Query: 190 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGTAA 131 ||||||||| Sbjct: 919 TTTTGATTTGATGCTTTTGACAATGTTTTTCTGGTTTGTTTGGTGGTTTTTCAGCGGTAA 978 Query: 130 TGATTGCTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGG 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 TGATTGCTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGG 1038 Query: 70 AAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAA 32 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 AAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAA 1077 >At5g47720 68418.t05477 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase Length = 3207 Minus Strand HSPs: Score = 895 (140.3 bits), Expect = 8.0e-35, P = 8.0e-35 Identities = 373/600 (62%), Positives = 373/600 (62%), Strand = Minus / Plus
Border_2 (16713_RBD)
TAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGA
TCAGATTGGCGTTAATTCAGTACATTTGGTCTTTTTACTCTATGCATCATTGTTTCTTATTCGGATTTTGATGCAGGAAGGGATCTCGTTTTGGTCATGA
TTCTTTAGTAGATGGAATGTTGAAGGATGGACTATGGGATGTCTATAACGACTGT
| Start of BLAST Alignment: | NT 588 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 604 / Intron 3 of 11 |
BLAST Details: Query Sequence: 16713_RBD Length: (255 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g48230 68418.t05534 acetyl-CoA C-acyltransferase, puta... 666 2.3e-24 1 At5g47720 68418.t05477 acetyl-CoA C-acyltransferase, puta... 343 1.1e-09 1 At5g39900 68418.t04502 GTP-binding protein LepA, putative... 174 0.048 1 At1g32590 68414.t03612 copia-like retrotransposon family ... 154 0.35 1 >At5g48230 68418.t05534 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase Length = 3515 Plus Strand HSPs: Score = 666 (106.0 bits), Expect = 2.3e-24, P = 2.3e-24 Identities = 142/150 (94%), Positives = 142/150 (94%), Strand = Plus / Plus Query: 107 TGGCGTTAATTCAGTA-CATTTGGTCTTTTTACTCTATGCATCATTGTTTCTTATTCGGA 165 || ||| | | | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1088 TGTGGTTT-TACGGAATCATTTGGTCTTTTTACTCTATGCATCATTGTTTCTTATTCGGA 1146 Query: 166 TTTTGATGCAGGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAG 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1147 TTTTGATGCAGGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAG 1206 Query: 226 GATGGACTATGGGATGTCTATAACGACTGT 255 |||||||||||||||||||||||||||||| Sbjct: 1207 GATGGACTATGGGATGTCTATAACGACTGT 1236 >At5g47720 68418.t05477 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase Length = 3207 Plus Strand HSPs: Score = 343 (57.5 bits), Expect = 1.1e-09, P = 1.1e-09 Identities = 105/140 (75%), Positives = 105/140 (75%), Strand = Plus / Plus