At5g21140 SYNGENTA 17358
Genomic Sequence (from TAIR)
acataattttcaatctacttttttttttttttcattatgcttataacctgcaaactagtggaaagatataatgatgccattactcttaaatatatattgc tttttggcaggtcctttttaagtcattttttgcaattccaatacatttcattgtcaggtttgctaattttcattaattttggactactttacaattacgg aattaccacgcctcttaaccacaaacaacaaacgcaaaatggacttttcgtatttcagaaaagataaaattaaagctgtattaaaaaacaattacctgtc aaaataattttatggcgtcatcgtgtcgataacgcttcccgccattccgtctctctctcaccgcactttctgtctccccaacaaatacaaaaccctaatt cacagaaacaatcagggttcaccagattctaaaaccctagctttttcatactgtgaaattacggaggtctctaaggATGGCATCGCTAAGCTGGAAGCAC CATACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAATTTCACTCAATCTTCACCGCCGTCACCGGCAGAAACCCAGgtctcgctc tcctcttatttaatacgattcggatgaatatcaaacttacttttgtgtg►ttaattccggattgaatttctattgaatcaaaatctgtaatttacgaatt cctatgattgttta◄gctggtctggtttagttattgcatatgctg►ctgattgaaaggtttattgtagacttgtatcctgatgctaagggtgaattgaat tactgggtaccttgatgttgaatgttgttaaaggaaccacattatattgat◄gaaattgttcgtttgtttttttggttgcagTAACTGTTAAAAAAATAT TTGACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTTGAGTTGAAGGCTTGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGT CGTTAACAATGTGGCTGATGATCAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGATTGCATTTTTTAAAGGCATTgtaagtcactctcttggactc tttttctctctggcttttcttctgttgttgatcaaatatctcaagttctattcatttgtacgagttatcattatctggatttcactcttctttgccacaa gtttatataacatataaatttctcctttgtcattcccttttcttgctatgtgtgcactcagtggatggatatctgtgctacttttctgtgacattgatga ctttaacttctggcagATAGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGATGCTCTTAATATTCGATTGGAGAATCAGgtc agtcatagtctctgacttatgtctatctaatatttacctcttcatttattgactaaatgaatccatccatatccattgttcaattaactgatcatggtga cttcaatactggttctaccttacagagtcgcttgaaagtatagtattctgttctgtatgagatatgatctcaaacgataatcaactttgtcgcttgtgcg cttgtggataaaattgcatgcactctgagttgtgttttttgtatgaagtgttttatccccgtttatgattgttgaatcaatatgaataaacgaatctcaa atgtctcagatattctcatctatcagtgtggtgaagactattaatgaattttaaagctattattgctatggactgtataaatgtattctctttgtttcgg ttgacagatcttgtgttaatatctcagATATCAAGTGAAGCCAGCAGCAGTCAACAGCAAGTCCCTCCTGCTTTCAAGAACTTTTCAATGACACAAAAGG AAAAAACTCTCGATGAACTTGTAAGGGACAAGTGGCTGTGCCGCACAAGAGAGAGAAACATTGGACTTGGTATAAGATCTCTTCTTGACCTTCGCAGTTG GTTCAGAAACAATGATGTTCCTTCCTGTGAGGTCTGCAATGAAGCTGGAGTAAAGgtctgcattctgaaaaaacctgattggattagaactcacattgtg atgataaacttattcgctactgattcaatatctgatgctttgttttctgacactcgtatccaacttttcagGCAGATTTGTGTCCAACCGAAGGTTGCCC TGTCCGGATACACAAGTACTGCCTCAAAAAATTGTTATCTCAAAGGgtacacactacacacatattctttagattttcctcaataatggtatatgagttt gacttcaatagtattttacattctgatcacattgaaattgtagGATGATAAACGTTGCTCTGGTTGCGGGAAGCCATGGCCCTTGAGTAAAATTACAAAA ACAGAAGCTGCTGAAGAAGCAATGAATGATGAAGAGGAAAGCGAGACTCAAGCAACAGCTCCAAAAGCCAAAAGAAGAAGACAACAGCGAGACTCAACTG AAAATGGTTCTTCTCAAGCTTCTTTAGCTTCAACTAGTGGTGCTAATACGAGAAGAGTAACCCGTAGCGTTGGGCACTCGAGGTAAaaaaccgtttaaga actccggttttagggcttagatgtatattttgatggccgttctatgtccaaacatcactagaagtttggtatgatctgatgctttctcttgtggatcatt aatggagtcatggagtgttaaaatatatttaaactcctcggttaaagtctacaatatatttaaattttaattccgagaatttatactaaaatgtgatttt gtcctttgtgcatttaactaaaattcaaatgaacttataaatgtaaaattttaatttaaaattttttatttaagaatggtaggatatcttaaaatatttc aacaaatgttaagatatccaattgacttgaaatgcattaatgccgagttttatgatttttttcttattaagaatctaatttcacctagattttctactaa tttt
Border_1 (17358_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAA
ATTACAGATTACAGATTACAGATTTTGATATTCGTAAACAATCATAGGAATTCGTAAATTACAGATTTTGATTCAATAGAAATTCAATCCGGAATTAACA
CACAAAAGTAAGTTTGATATTCATCCGAATCGTATTAAATAAGAGGAGAGCGAGACCTGGGTTTCTGCCGGTGACGGCGGTGAAGATTGAGTGAAATTCT
TTCTCCTTGAGAGGACCTCGTGAAATCAAAGCCTGAATTAGGGTATGGTGCTTCCAGCTTAGCGATGCCATCCTTAGAGACCTCCGTAATTTCACAGTAT
GAAAAAGCTAGGGTTTTAGAATCTGGTGAACCCTGATTGTTTCTGTGAATTAGGGTTTTGTATTTGTTGGGGAGACAGAAAGTGC
| Start of BLAST Alignment: | NT 372 / Intron 1 of 5 |
| First 15 bp Perfect Match: | NT 237 / Intron 1 of 5 |
BLAST Details: Query Sequence: 17358_LB1 Length: (585 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g21140 68418.t02288 expressed protein 1692 4.1e-72 1 At3g42230 68416.t04011 CACTA-like transposase family (Tnp... 215 0.14 1 At1g43080 68414.t04527 glycoside hydrolase family 28 prot... 203 0.41 1 At1g43090 68414.t04528 glycoside hydrolase family 28 prot... 203 0.41 1 >At5g21140 68418.t02288 expressed protein Length = 2521 Minus Strand HSPs: Score = 1692 (259.9 bits), Expect = 4.1e-72, P = 4.1e-72 Identities = 408/474 (86%), Positives = 408/474 (86%), Strand = Minus / Plus Query: 569 CAACAAATACAAAACCCTAATTCACAGAAACAATCAGGGTTCACCAGATTCTAAAACCCT 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 CAACAAATACAAAACCCTAATTCACAGAAACAATCAGGGTTCACCAGATTCTAAAACCCT 60 Query: 509 AGCTTTTTCATACTGTGAAATTACGGAGGTCTCTAAGGATGGCATCGCTAAGCTGGAAGC 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 AGCTTTTTCATACTGTGAAATTACGGAGGTCTCTAAGGATGGCATCGCTAAGCTGGAAGC 120 Query: 449 ACCATACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAATTTCACT 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ACCATACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAATTTCACT 180 Query: 389 CAATCTTCACCGCCGTCACCGGCAGAAACCCAGGTCTCGCTCTCCTCTTATTTAATACGA 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 CAATCTTCACCGCCGTCACCGGCAGAAACCCAGGTCTCGCTCTCCTCTTATTTAATACGA 240 Query: 329 TTCGGATGAATATCAAACTTACTTTTGTGTGTTAATTCCGGATTGAATTTCTATTGAATC 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 TTCGGATGAATATCAAACTTACTTTTGTGTGTTAATTCCGGATTGAATTTCTATTGAATC 300 Query: 269 AAAATCTGTAATTTACGAATTCCTATGATTGTTTACGAATATCAAAATCTGTAATCTGTA 210 ||||||||||||||||||||||||||||||||||| | || | || || || | Sbjct: 301 AAAATCTGTAATTTACGAATTCCTATGATTGTTTA-GCTGGTCTGGTTTAGTTAT-TGCA 358 Query: 209 -AT-CTG-TAATTTATAT-TGTGGTGTAAACAA--AT--TGACGCTTAGACA-ACTT-AA 160 || ||| | ||| | | | | |||| || || ||| ||| || | || || Sbjct: 359 TATGCTGCTGATTGAAAGGTTTATTGTAGACTTGTATCCTGATGCTAAGGGTGAATTGAA 418 Query: 159 TAACACATTGCGGACGTTTTTAATGTACTGAATTAACGCCGAATTGAATTCGAT 106 | || | | | || ||||| | || | || ||| ||| ||| Sbjct: 419 TTACTGGGTACCTTGATGTTGAATGTTGTTAAAGGAA-CCACATTATATT-GAT 470 >At3g42230 68416.t04011 CACTA-like transposase family (Tnp1/En/Spm) has a 1.0e-42 P-value blast match to ref|NP_189784.1| TNP1-related protein [Arabidopsis thaliana] (CACTA-element) Length = 2854 Minus Strand HSPs: Score = 215 (38.3 bits), Expect = 0.15, P = 0.14 Identities = 145/241 (60%), Positives = 145/241 (60%), Strand = Minus / Plus
Border_2 (17358_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGATTGAAAGGTTTATTGTAGACTTGTATCCTGATGCTAAGGGTGAATTGAATTACTGGGTACCTTGATGTTGAATGTTGTTAAAGGAACCACATTAT
ATTGATGAAATTGTTCGTTTGTTTTTTTGGTTGCAGTAACTGTTAAAAAAATATTTGACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCA
CTTTGAGTTGAAGGCTTGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGTCGTTAACAATGTGGCTGATGATCAATCCAAACTCGGGACTAAATAT
TCTGTTCCCCAGATTGCATTTTTTAAAGGCATTGTAAGTCACTCTCTTGGACTCTTTTTCTCTCTGGCTTTTCTTCTGTTGTTGATCAAATATCTCAAGT
TCTATTCATTTGTACGAGTTATCATTATCTGGATTTCACTCTTCTTTGCCACAAGTTTATATAACATATAAATTTCTCCTTTGTCATTCCCTTTTCTTGC
TATGTGTGCACTCAGTGGATGGATATCTGTGCTACTTTTCTGTGACATTGATGACTTTAACTTCTGGCAGATAGAAGCAATTGCACAGGATGAAGCTGCT
CAAGGTTGCATATCGAGCTTTGATGCTCTTAATATTCGATTGGAGAATCAGGTCAGTCATAGTCTCTGACTTATGTCTATCTAATATTTACCTCTTCATT
TATTGACTAAATGAATCCATCCATATCCATTGTTCAATTAACTGATCATGGTGACTTCAATACTGGTTCTACCTTACAGAGTCGCTTGAAAGTATAGTAT
TCTGTTCTGTATGAGATATGATCTCAAACGATAATCAACTTTGTCGCTTGTGCGCTTGTGGATAAAATTGCATGCACTCTGAGTTGTGTTTTTTGTATGA
AGTGTTTTATCCCCGTTTATGATTGTTGAATCAATATGAATAAACGAATCTCAAATGTCTCAGATATTCTCATCTATCAGTGTGGTGAAGACTATTAATG
AATTTTAAAGCTATTATTGCTATGGACTGTATAAATGTATTCTCTTTGTTTCGGTTGACAGATCTTGTGTAAT
| Start of BLAST Alignment: | NT 173 / Intron 1 of 5 |
| First 15 bp Perfect Match: | NT 267 / Intron 1 of 5 |
BLAST Details: Query Sequence: 17358_LB2 Length: (1273 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g21140 68418.t02288 expressed protein 5382 8.8e-239 1 At2g28070 68415.t03170 ABC transporter family protein 284 0.00041 1 At3g32026 68416.t03727 pseudogene, hypothetical protein 216 0.37 1 At2g14680 68415.t01574 myosin heavy chain-related contain... 215 0.49 1 >At5g21140 68418.t02288 expressed protein Length = 2521 Plus Strand HSPs: Score = 5382 (813.6 bits), Expect = 8.8e-239, P = 8.8e-239 Identities = 1126/1170 (96%), Positives = 1126/1170 (96%), Strand = Plus / Plus Query: 113 TCAATTCGGCGTT-AATT-C-AGTACATTAAAAAC-GTCCGCAATGTGTTATTAAG-TTG 167 | ||||| | || |||| | | | || |||| | || | | || || | ||| Sbjct: 272 TTAATTCCGGATTGAATTTCTATTGAATCAAAATCTGTAATTTACGAATTCCTATGATTG 331 Query: 168 TCTAAGCGTCAATTTGTTTAC--ACCACAATATA-TCCTGATTGAAAGGTTTATTGTAGA 224 | || || | | ||||| | || ||| | ||||||||||||||||||||||| Sbjct: 332 TTTA-GC-TGGTCTGGTTTAGTTATTGCA-TATGCTGCTGATTGAAAGGTTTATTGTAGA 388 Query: 225 CTTGTATCCTGATGCTAAGGGTGAATTGAATTACTGGGTACCTTGATGTTGAATGTTGTT 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 CTTGTATCCTGATGCTAAGGGTGAATTGAATTACTGGGTACCTTGATGTTGAATGTTGTT 448 Query: 285 AAAGGAACCACATTATATTGATGAAATTGTTCGTTTGTTTTTTTGGTTGCAGTAACTGTT 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 AAAGGAACCACATTATATTGATGAAATTGTTCGTTTGTTTTTTTGGTTGCAGTAACTGTT 508 Query: 345 AAAAAAATATTTGACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 AAAAAAATATTTGACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTT 568 Query: 405 GAGTTGAAGGCTTGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGTCGTTAACAAT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 GAGTTGAAGGCTTGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGTCGTTAACAAT 628 Query: 465 GTGGCTGATGATCAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGATTGCATTTTTT 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 GTGGCTGATGATCAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGATTGCATTTTTT 688 Query: 525 AAAGGCATTGTAAGTCACTCTCTTGGACTCTTTTTCTCTCTGGCTTTTCTTCTGTTGTTG 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 AAAGGCATTGTAAGTCACTCTCTTGGACTCTTTTTCTCTCTGGCTTTTCTTCTGTTGTTG 748 Query: 585 ATCAAATATCTCAAGTTCTATTCATTTGTACGAGTTATCATTATCTGGATTTCACTCTTC 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 ATCAAATATCTCAAGTTCTATTCATTTGTACGAGTTATCATTATCTGGATTTCACTCTTC 808 Query: 645 TTTGCCACAAGTTTATATAACATATAAATTTCTCCTTTGTCATTCCCTTTTCTTGCTATG 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 809 TTTGCCACAAGTTTATATAACATATAAATTTCTCCTTTGTCATTCCCTTTTCTTGCTATG 868 Query: 705 TGTGCACTCAGTGGATGGATATCTGTGCTACTTTTCTGTGACATTGATGACTTTAACTTC 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 869 TGTGCACTCAGTGGATGGATATCTGTGCTACTTTTCTGTGACATTGATGACTTTAACTTC 928 Query: 765 TGGCAGATAGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGAT 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 929 TGGCAGATAGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGAT 988 Query: 825 GCTCTTAATATTCGATTGGAGAATCAGGTCAGTCATAGTCTCTGACTTATGTCTATCTAA 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 989 GCTCTTAATATTCGATTGGAGAATCAGGTCAGTCATAGTCTCTGACTTATGTCTATCTAA 1048 Query: 885 TATTTACCTCTTCATTTATTGACTAAATGAATCCATCCATATCCATTGTTCAATTAACTG 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1049 TATTTACCTCTTCATTTATTGACTAAATGAATCCATCCATATCCATTGTTCAATTAACTG 1108 Query: 945 ATCATGGTGACTTCAATACTGGTTCTACCTTACAGAGTCGCTTGAAAGTATAGTATTCTG 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1109 ATCATGGTGACTTCAATACTGGTTCTACCTTACAGAGTCGCTTGAAAGTATAGTATTCTG 1168 Query: 1005 TTCTGTATGAGATATGATCTCAAACGATAATCAACTTTGTCGCTTGTGCGCTTGTGGATA 1064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1169 TTCTGTATGAGATATGATCTCAAACGATAATCAACTTTGTCGCTTGTGCGCTTGTGGATA 1228 Query: 1065 AAATTGCATGCACTCTGAGTTGTGTTTTTTGTATGAAGTGTTTTATCCCCGTTTATGATT 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1229 AAATTGCATGCACTCTGAGTTGTGTTTTTTGTATGAAGTGTTTTATCCCCGTTTATGATT 1288 Query: 1125 GTTGAATCAATATGAATAAACGAATCTCAAATGTCTCAGATATTCTCATCTATCAGTGTG 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1289 GTTGAATCAATATGAATAAACGAATCTCAAATGTCTCAGATATTCTCATCTATCAGTGTG 1348 Query: 1185 GTGAAGACTATTAATGAATTTTAAAGCTATTATTGCTATGGACTGTATAAATGTATTCTC 1244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 GTGAAGACTATTAATGAATTTTAAAGCTATTATTGCTATGGACTGTATAAATGTATTCTC 1408 Query: 1245 TTTGTTTCGGTTGACAGATCTTGTGT-AAT 1273 |||||||||||||||||||||||||| ||| Sbjct: 1409 TTTGTTTCGGTTGACAGATCTTGTGTTAAT 1438 >At2g28070 68415.t03170 ABC transporter family protein Length = 3351 Plus Strand HSPs: Score = 284 (48.7 bits), Expect = 0.00041, P = 0.00041 Identities = 360/634 (56%), Positives = 360/634 (56%), Strand = Plus / Plus