At2g31340 SYNGENTA 17393
Genomic Sequence (from TAIR)
gttgctctcacatccccaaaggctcgggttcgtgccacggatgatccctcttgtgaatctcaagcttgatctcaataccaaaatttggactatgggtgga actttttgtattcatttttgttgtatacgagaaactatgctttacatgttcttgtaagttgtaacaaagctatgagagcaaatttgtttgaaagtataag tttgtttaacaaatttgtaatagtactggaaatgtttgataaccggaataatagtcttcttatttggtttaagagacgataaatgattcagattgtataa accggttcatattggttcgattgtataaaccggttgagattggttcgagttgaaatttgttcttcgttggcgagagatccttgaacgcttaaaccctcca tggttttggattgaacatttcccctgagatttgggagtgtccttaaaccccatacactgatcgagctcaagaagaaggagaagcagagaaATGGTGAATA AACATTGGAAGATAATTCCAAAGCCGCTTCTAGAAACAGTTCTCAACAACCATGTCCAACGCCACCGTGTTCCTCAGCCTCTCATCCTCCATGGTCCTCG TGGCGTCGGCAAAACCACATTGATCCTCAACCgtaaaatcctctctttgaatccctaatttccccaattttgttcaaatgatcgtacctttgattcgttc ccgatctcgttcttattagGTCTACTCGGAGATTGGAACAAAGGGCCACATCTCGCTGGCTATGTAGATTTTGCGCAATCGATAACGGAACACCATCCAG ATCACCACCAATCATATCCATGGACGTCTTGGACCAGTGTTGACCCACCGTTGTTGTCCAATTGCAAAACCCAGCTCGAGAATTGTCTTGAATCTATGAG TCACAAAGCTATCAAACTTGGGAGTATAAGCTCGCAGCAGATTTTCACTACTATGAACAAATGGTATGGTCTTAATACTGCACTTCGTCGTATACTTCAG GGTTATAACATTGCTGTTCCAGAGAAAGTCTCGGTTTCATTTCTCTGGGAACGGGCTGTGTATGCCCTATCTGTTCGACAAAATGCCGATGAGATTGATG GGTTGCTTGAATTGGAAGAGAAAGGTAATAGCTTGTCCGTTGAAGAGGCTTCGTATTATAGAGAGACTGCTTTTGCGTTAAGATTGGCTAAAGAGGTTAT TAAGGTGCACCAGGGTTGGAAAGCCAATGCCATTGCTCATCTTAATCGAACTAATGGGTTTTCGAGAACTTTAGCGAATTCATGTACTGATTGGCCGTTG CTAATGCTTGAGTTGTTATCACAAGCTGCAGAGATTGGCTTCTTCCAGgtaatggaatagataagtaatggaatggaatctttgatcttatgagtggtaa acagtaaatgtattcatctggaaacagtttgccaactattgatgttatttttgtttgtctctatttcttgtttcatttgacagCCTAAGCTGGTCTTGAA CAACATTGAAATCTTGAAGAGGGCTATTCAGACTGATGATTCAACAGTCTCAGCGTCAATGTACCATGACAATCTTATTTGGAGAATAATAGCGTTAGGT GCGAATGAGCGCTGTCTACCTGTCCTATTCGTGACTTCGGACAGgtttgtcctgttttttgttagcatttttgggtttaataaggacaatctgttactat ctgatgattacgtggtctcttaatctagcctttaagtttcaatttctcaacactagaggggaaactggtttctgacttgtatcactttgtagtatgccat taagttaccgaaagtctgaataatcattttccattctgaacttggctcttagttacagaaatgtcttttgaaacttttttatcattttatctgatgtcta ataatttgaattatgacagCTACTATTCATATCAAGCCTTTGTTGACTACGGGTTTCCAGACATTTTCATCTCTCGTGAGgtatagaagctacatgtata catctaagtaaactattgattctgtgtgtatttgtgtgagcatgtattggtaatttgatatattatgtagagtttccccgtctcaccttcattatatcaa catgaaagttcattttttatttttcttcattctacctttcttacgttgcactttggctttgtttcatttgtagACATTTGGATGGAATCCTCAAGAAGCA AAATTACACATGGTT►CCTGATTACTTCAGTGCTTCGGAGgtgagaaaaatgctgtaggtaatggcactgcttgtttaatgaaaccaaaatatgtgacaa ctctaaaacctaataatatcaaaccagaaaggttgaatgatcttttatgctaaaattttactggtcattctttttttaattgagatgctgtatattacta gaggtttaacatatgttggaattgtagTGGACTATCATTGCTGATGTTCT◄TGGTGCGAATTCTCGGCATCTATTTGAGCTTTATGCGCTTAAACAAAGT AATCATTACCAGAGgtaatggtttcctgttctttcgtttgctctaatctcaaaatgtgtcaaccctctattttttcgtttctcaaatgtgacctagtgcc gttgtgttttatcagTTTGATGGGGAGTAAAGCAGGTACATTTGAAGATATTGTGGATGCATACTTGGCATATTTACAAgtaagctcatttaaagtgatt gctttcaaattacgcacgaaagtcatcgttaattttatagtctatttccttgtttagGTTGCTGTGGTTAATCCTGCAATGGACAAAGCGTTGTTGCGGC TTCAACGGTATGCCACTGATGTACGAAAAGGAAGCATTCCGTATGAAAAATTACGTTTTGGTGCTTCATGGAGGCATCCTCCGCAAACTGAGGATCCTAC ACAGAACTCTGAGTGGGCTAAAATTCAGCTGATGGATTTTGTCCAAGCTCTTGTCAATACAGAATTCGCGgtacctactcttctagacccttgatggaaa taaagccaaagtgttcagttttaccttatcggacatgaaactaatgattatagcatcactaatagtgtacaagcatcaatgattctatagGTAAATTATT TGGGTGACTATAGCCTTGAGATCTTTGAAGACCCTTCAGCTATGGCATTGGTTGAGgtaaaaacttctatcttttcttgatcagtagacactaatttcga gacccattttactaaaaactgattaattctgtttcagGTTGGGATACTGTATACTCAGCGAGATCCATCTTTTTTCCGGCCAATATCTCAAGGCATTAAA AGATGCCTTGTTAGATGgtcagcaaactttcttcccttctcctatggatctgctctttgaaactctgtttttttacttacgctcatgatttgcattacag GCTCATCCAAGAGCGGATGCAGATGAGTTATTGGAGCTCAACAAAATATTGGTGGCAGAGAATCATCCGGGGTCGTTATTACAAGCATTTAATGCTTGGC TACAGAACATAGgcagtttcacacaggtagagacgattacacgctctgtttctagctctcttgcatcacattgctttagaggataatgaacttaggactt tcgtaaactttcgattcaaaaacttatctgttcaagttgatgcgttagcatcgatgaatcctcaagtctcaacaaacgtacaatgttgctgttacttcta ctgataaaactaattatcccaagtttcacacatcaatgcaggttttgttttcacaggaacgtcgatgaaatctcggtatcttgtgcacgtacacatgtcg gactcaggttttaccgtgaagtagaaaacataaaggggcgttgtttttgttgccgtcaaggtctgacttttagtaaaatcacattaagaagagacgtcgg agggaaaaacctccagctacagaacggtgtaatcgtgtaagtgggaatacattgccatgagaacgtctttctcttcagacgctgtatataaagcgcatgt tg
Border_1 (17393_RBU)
AACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTCCCGCCTGATT
ACTTCAGTGCTTCGGAGGTGAGAAAAATGCTGTAGGTAATGGCACTGCTTGTTTAATGAAACCAAAATATGTGACAACTCTAAAACCTAATAATATCAAA
CCAGAAAGGTTGAATGATCTTTTATGCTAAAATTTTACTGGTCATTCTTTTTTTAATTGAGATGCTGTATATTACTAGAGGTTTAACATATGTTGGAATT
GTAGTGGACTATCATTGCTGATGTTCTTGGTGCGAATTCTCGGCATCTATTTGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGGTAATGGTTT
CCTGTTCTTTCGTTTGCTCTAATCTCAAAATGTGTCAACCCTCTATTTTTTCGTTTCTCAAATGTGACCTAGTGCCGTTGTGTTTTATCAGTTTGATGGG
GAGTAAAGCAGGTACATTTGAAGATATTGTGGATGCATACTTGGCATATTTACAAGTAAGCTCATTTAAAGTGATTGCTTTCAAATTACGCACGAAAGTC
ATCGGTAATTTTATAGTCTATTTCCTT:GTTAAGGTGCTGTGGTTAATCCTGCAATGGA:CAAAGCGTTGTTGCGGCTTCAACGGTATGCCACT:GATGT
ACGAAAA:GGAAGCA:TTCCGTATGAAAAATTACGTTTTGGTGCTTCATGGAGGCATCCTCCGCAAACTGAGGATCCTACACAGAACTCTGAGTGGGCTA
| Start of BLAST Alignment: | NT 1725 / Exon 5 of 11 |
| First 15 bp Perfect Match: | NT 1725 / Exon 5 of 11 |
BLAST Details: Query Sequence: 17393_RBU Length: (795 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31340 68415.t03551 expressed protein 3482 3.9e-153 1 At4g17280 68417.t02445 auxin-responsive family protein si... 201 0.71 1 At4g24970 68417.t03338 ATP-binding region, ATPase-like do... 189 0.994 1 At3g51420 68416.t05240 strictosidine synthase family prot... 184 0.9996 1 >At2g31340 68415.t03551 expressed protein Length = 3695 Plus Strand HSPs: Score = 3482 (528.5 bits), Expect = 3.9e-153, P = 3.9e-153 Identities = 700/703 (99%), Positives = 700/703 (99%), Strand = Plus / Plus Query: 94 CCTGATTACTTCAGTGCTTCGGAGGTGAGAAAAATGCTGTAGGTAATGGCACTGCTTGTT 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1834 CCTGATTACTTCAGTGCTTCGGAGGTGAGAAAAATGCTGTAGGTAATGGCACTGCTTGTT 1893 Query: 154 TAATGAAACCAAAATATGTGACAACTCTAAAACCTAATAATATCAAACCAGAAAGGTTGA 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1894 TAATGAAACCAAAATATGTGACAACTCTAAAACCTAATAATATCAAACCAGAAAGGTTGA 1953 Query: 214 ATGATCTTTTATGCTAAAATTTTACTGGTCATTCTTTTTTTAATTGAGATGCTGTATATT 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1954 ATGATCTTTTATGCTAAAATTTTACTGGTCATTCTTTTTTTAATTGAGATGCTGTATATT 2013 Query: 274 ACTAGAGGTTTAACATATGTTGGAATTGTAGTGGACTATCATTGCTGATGTTCTTGGTGC 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2014 ACTAGAGGTTTAACATATGTTGGAATTGTAGTGGACTATCATTGCTGATGTTCTTGGTGC 2073 Query: 334 GAATTCTCGGCATCTATTTGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGGTA 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2074 GAATTCTCGGCATCTATTTGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGGTA 2133 Query: 394 ATGGTTTCCTGTTCTTTCGTTTGCTCTAATCTCAAAATGTGTCAACCCTCTATTTTTTCG 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2134 ATGGTTTCCTGTTCTTTCGTTTGCTCTAATCTCAAAATGTGTCAACCCTCTATTTTTTCG 2193 Query: 454 TTTCTCAAATGTGACCTAGTGCCGTTGTGTTTTATCAGTTTGATGGGGAGTAAAGCAGGT 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2194 TTTCTCAAATGTGACCTAGTGCCGTTGTGTTTTATCAGTTTGATGGGGAGTAAAGCAGGT 2253 Query: 514 ACATTTGAAGATATTGTGGATGCATACTTGGCATATTTACAAGTAAGCTCATTTAAAGTG 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2254 ACATTTGAAGATATTGTGGATGCATACTTGGCATATTTACAAGTAAGCTCATTTAAAGTG 2313 Query: 574 ATTGCTTTCAAATTACGCACGAAAGTCATCGGTAATTTTATAGTCTATTTCCTTGTTAAG 633 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 2314 ATTGCTTTCAAATTACGCACGAAAGTCATCGTTAATTTTATAGTCTATTTCCTTGTTTAG 2373 Query: 634 GT-GCTGTGGTTAATCCTGCAATGGACAAAGCGTTGTTGCGGCTTCAACGGTATGCCACT 692 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2374 GTTGCTGTGGTTAATCCTGCAATGGACAAAGCGTTGTTGCGGCTTCAACGGTATGCCACT 2433 Query: 693 GATGTACGAAAAGGAAGCATTCCGTATGAAAAATTACGTTTTGGTGCTTCATGGAGGCAT 752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2434 GATGTACGAAAAGGAAGCATTCCGTATGAAAAATTACGTTTTGGTGCTTCATGGAGGCAT 2493 Query: 753 CCTCCGCAAACTGAGGATCCTACACAGAACTCTGAGTGGGCTA 795 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2494 CCTCCGCAAACTGAGGATCCTACACAGAACTCTGAGTGGGCTA 2536 >At4g17280 68417.t02445 auxin-responsive family protein similar to auxin-induced protein AIR12 (GI:11357190) [Arabidopsis thaliana] Length = 1861 Minus Strand HSPs: Score = 201 (36.2 bits), Expect = 1.2, P = 0.71 Identities = 115/189 (60%), Positives = 115/189 (60%), Strand = Minus / Plus
Border_2 (17393_AbB_D)
AGAACATCAGCAATGATAGTCCACTACAATTCCAACATATGTTAAACCTCTAGTAATATACAGCATCTCAATTAAAAAAAGAATGACC:AGTAAAATTTT
AGCATAAAAGATCATTCAACCTTTCTGGTTTGATATTATTAGGTTTTAGAGTTGTCACATATTTTGGTTTCATTAAACAAGCAGTGCCATTACCTACAGC
ATTTTTCTCACCTCCGAAGCACTGAAGTAATCAGG
| Start of BLAST Alignment: | NT 1959 / Exon 6 of 11 |
| First 15 bp Perfect Match: | NT 1959 / Exon 6 of 11 |
BLAST Details: Query Sequence: 17393_AbB_D Length: (234 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31340 68415.t03551 expressed protein 1170 2.6e-47 1 At4g17280 68417.t02445 auxin-responsive family protein si... 201 0.0028 1 At3g17010 68416.t01930 transcriptional factor B3 family p... 174 0.047 1 At4g24970 68417.t03338 ATP-binding region, ATPase-like do... 173 0.057 1 >At2g31340 68415.t03551 expressed protein Length = 3695 Minus Strand HSPs: Score = 1170 (181.6 bits), Expect = 2.6e-47, P = 2.6e-47 Identities = 234/234 (100%), Positives = 234/234 (100%), Strand = Minus / Plus Query: 234 CCTGATTACTTCAGTGCTTCGGAGGTGAGAAAAATGCTGTAGGTAATGGCACTGCTTGTT 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1834 CCTGATTACTTCAGTGCTTCGGAGGTGAGAAAAATGCTGTAGGTAATGGCACTGCTTGTT 1893 Query: 174 TAATGAAACCAAAATATGTGACAACTCTAAAACCTAATAATATCAAACCAGAAAGGTTGA 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1894 TAATGAAACCAAAATATGTGACAACTCTAAAACCTAATAATATCAAACCAGAAAGGTTGA 1953 Query: 114 ATGATCTTTTATGCTAAAATTTTACTGGTCATTCTTTTTTTAATTGAGATGCTGTATATT 55 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1954 ATGATCTTTTATGCTAAAATTTTACTGGTCATTCTTTTTTTAATTGAGATGCTGTATATT 2013 Query: 54 ACTAGAGGTTTAACATATGTTGGAATTGTAGTGGACTATCATTGCTGATGTTCT 1 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2014 ACTAGAGGTTTAACATATGTTGGAATTGTAGTGGACTATCATTGCTGATGTTCT 2067 >At4g17280 68417.t02445 auxin-responsive family protein similar to auxin-induced protein AIR12 (GI:11357190) [Arabidopsis thaliana] Length = 1861 Plus Strand HSPs: Score = 201 (36.2 bits), Expect = 0.0028, P = 0.0028 Identities = 115/189 (60%), Positives = 115/189 (60%), Strand = Plus / Plus