At1g56200 SYNGENTA 18502
Genomic Sequence (from TAIR)
AACGCCAGTCACTGTTTAAcaacatctctttattacacctgaagggacccccctaaatgagtttcttcttcttattctgttgtaaatcaaagtctttgtt gtaccatcaaatccatagagaggagggactctttttgtctcaaataaaatcaaatacagtgacattcgttattttgagcaaaacatcaatcaactgctcg aaatcattttaaccttgagaatagtttcatcctcaaaataaattttcaagaaaatacgaggactcgaaacgaaaaaggatgtaaatattcccacgtgccg tttcattattggctgcaagttgccaaaagtatacatacgcgcaggtgaaatggatttatctatctctaaag◄ttgttcct►tcttctctccttcgtctcc cgtcaagctgctttagccATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGCAACAACGgtacgctttctttctcactctatt agctcgccgtatatttccttatgctctggctctgggttacgtttttttttatccctagggattttaaagatgaggtatcaaaatttggtgttgattgaaa ctttttaccgatcattttttggaccaagagtgtaaacctagctttttgtttgatatagCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCA AAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTgttag tcatcttaacctcacatgtctctatggattgggatttgcttcactgaattgctttttcattgataacatctatctctaattgcaaaatgatcatcttgtt cttctttgttatctcccttgcagAACGCGAAATGCAGTGAAGGACAAACACAGACCGTTACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACTg taagctctctcactttttctagtgtcctttgtttcatttttgctttcttctaatgaataatggcctgtccaaactcctgctagatttagatttagggata ggaagctttccaaatgtgtatctaaaactatgaattgagattctcccattacttacaaagagggtttagctacaagtcagagcttgttaggtgtttatct tatctgaactattttggatgtggtccaagagttcgaacttattgtgtgttggttttcagCTAAGGAGAAATCACCAAGCCTAGACGATGGAGGAGACGGG TTCCCACCGCGAGATGATGGAGATGGTGGTGGAGGAGGAGGGGGTGGAGGCAACTGGTCGGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGGTC TATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATAAtaatatgggccactcttggttatcttattacagctacaggactcatt ttgtatctgtttcgttgagtgggggatgatatgccttgtattcaagagaagagagacacggttgatttcaacaaagcttatattgataactttgaaatcc tggcaaaataacaaattcgaactataaagatatatacactgtatataggcaaaaatgaagcatctcattcattcttgtcggtgtggttcttttgaggatc ttcagaagttcaaatcaaacggattttggataaatccaagcactatcattaattagatgaagaggaaattcataaatataactatagattgtttaaccgt gatactcggtttaaccgtgatactccctacactagcctagatacactctccaacgagaaagaaaccaatggtaagaataagattgttgttaggagaaaca ac
Border_1 (18502_AbBU)
GTATTTTACAAATACAAATACATACTAAGGGTTTCTTATATGCTCAACACATGAGCGAAACCCTATAAGAACCCTAATTCCCTTATCTGGGAACTACTCA
CACATTATTATAGAGAGAGATAGATTTGTAGAGAGAGACTGGTGATTTCAGCGGGCATGCCTGCAGGTCGACTCTAGAGGATCCTAGAACGCGTGAKMTC
AGATCTCGGTGACGGGCAGGACCGGACGGGGCGGTACCGGCAGGCTGAAGTCCAGCTGCCAGAAACCCACGTCATGCCAGTTCCCGTGCTTGAAGCCGGC
CGCCCGCAGCATGCCGCGGGGGGCATATCCGAGCGCCTCGTGCATGCGCACGCTCGGGTCGTTGGGCAGCCCGATGACAGCGACCACGCTCTTGAAGCCC
TGTGCCTCCAGGGACTTCAGCAGGTGGGTGTAGAGCGTGGAGCCCAGTCCCGTCCGCTGGTGGCGGGGGGAGACGTACACGGTCGACTCGGCCGTCCAGT
CGTAGGCGTTGCGTGCCTTCCAGGGGCCCGCGTAGGCGATGCCGGCGACCTCGCCGTCCACCTCGGCGACGAGCCAGGGATAGCGCTCCCGCAGACGGAC
GAGGTCGTCCGTCCACTCCTGCGGTTCCTGCGGCTCGGTACGGAAGTTGACCGTGCTTGTCTCGATGTAGTGGTTGACGATGGTGCAGACCGCCGGCATG
TCCGCCTCGGTGGCACGGCGGATGTCGGCCGGGCGTCGTTCTGGGCTCATGGATCCACGTGTGGAAGATATGAATTTTTTTGAGAAACTAGATAAGATTA
ATRRATWWMKGWRTWTYGGTKTTTTGGTTTTTTCTTGTGGCCGTCTTTGTTTATATTGAGATTTTTCAAATCAGTGCGCAAGACGTGACGTAAGTATCCG
AGTCAGTTTTTATTTTTCTACTAATTTGGTCGTTTATTTCGGCGTGTAGGACATGGCAACCGGGCCTGAATTTCGCGGGTATTCTGTTTCTATTCCAACT
TTTTCTTGATCCGCAGCCATTAACGACTTTTGAATAGATACGCTGACACGCCAAGCCTCGCTAGTCAAAAGTGTACCAAACAACGCTTTACAGCAAGAAC
GGAATGCGCGTGACGCTCGCGGTGACGCCATTTCGCCTTTTCAGAAATGGATAAATAGCCTTGCTTTAGAGATAGATAAATCCATTTCACCTGCGCGTAT
GTATACTTTTGGCAACTTGCAGCCAATAATGAAACGGCACGTGGGAATATTTACATCCTTTTTCGTTTCGAGTCCTCGTATTTTCTTGAAAATTTATTTT
GAGGATGAAACTATTCTCAAGGTTAAAATGATTTCGAGCAGTTGATTGATGTTTTGCTCAAAATAACGAATGTCACTGTATTTGATTTTATTTGAGACAA
AAAGAGTCCCTCCTCTCTATGGATTTGATGGTACAACAAAGACTTTGATTTACAACAGAATAAGAAGAAGAAACTCATTTAGGGGGGTCCCTTCAGGTGT
AATAAAGAGATGTTGTTAAACAGTGACTGGCGTTGCTTCATCAAGAGCGACGACACCGGGAAGCACTTTGCCTTCCAAGAGCTCCAAACTGGCACCACCA
CCTGTGGAGATGTGACTCATGACTCCTGCTACTCCCACTTTCTCCACTGCTGCCACCGAGTCTCCTCCTCCTATTATCGTTGTCACTCCCTTTTTGCTTA
GCTCTGCTAGTTTATTCGCTACCGCCTGCGCCATTCAACCATGCTACATATTAGTTCCAACAAAGAGTCAACTAACAGTATATAAGAGTCAGAGAATTAT
ATGCACCTCAGTTCCTTTTGCAAACTTTTCAAACTCGAAAACTCCCATTGGTCCATTCCAAATACTGTCTGC
| Start of BLAST Alignment: | < 45 / Upstream |
| First 15 bp Perfect Match: | < 45 / Upstream |
BLAST Details: Query Sequence: 18502_AbBU Border #1 Length: (1872 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F14G9 60758 3535 1.7e-153 1 MBK21 60510 1162 2.6e-46 1 T8K14 51297 524 1.1e-16 2 T32E20 51871 202 0.99991 1 F14G9 60758 Length = 111,481 Plus Strand HSPs: Score = 3535 (536.4 bits), Expect = 1.7e-153, P = 1.7e-153 Identities = 709/710 (99%), Positives = 709/710 (99%), Strand = Plus / Plus Query: 1164 CTTTAGAGATAGATAAATCCATTTCACCTGCGCGTATGTATACTTTTGGCAACTTGCAGC 1223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77412 CTTTAGAGATAGATAAATCCATTTCACCTGCGCGTATGTATACTTTTGGCAACTTGCAGC 77471 Query: 1224 CAATAATGAAACGGCACGTGGGAATATTTACATCCTTTTTCGTTTCGAGTCCTCGTATTT 1283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77472 CAATAATGAAACGGCACGTGGGAATATTTACATCCTTTTTCGTTTCGAGTCCTCGTATTT 77531 Query: 1284 TCTTGAAAATTTATTTTGAGGATGAAACTATTCTCAAGGTTAAAATGATTTCGAGCAGTT 1343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77532 TCTTGAAAATTTATTTTGAGGATGAAACTATTCTCAAGGTTAAAATGATTTCGAGCAGTT 77591 Query: 1344 GATTGATGTTTTGCTCAAAATAACGAATGTCACTGTATTTGATTTTATTTGAGACAAAAA 1403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77592 GATTGATGTTTTGCTCAAAATAACGAATGTCACTGTATTTGATTTTATTTGAGACAAAAA 77651 Query: 1404 GAGTCCCTCCTCTCTATGGATTTGATGGTACAACAAAGACTTTGATTTACAACAGAATAA 1463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77652 GAGTCCCTCCTCTCTATGGATTTGATGGTACAACAAAGACTTTGATTTACAACAGAATAA 77711 Query: 1464 GAAGAAGAAACTCATTTAGGGGGGTCCCTTCAGGTGTAATAAAGAGATGTTGTTAAACAG 1523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77712 GAAGAAGAAACTCATTTAGGGGGGTCCCTTCAGGTGTAATAAAGAGATGTTGTTAAACAG 77771 Query: 1524 TGACTGGCGTTGCTTCATCAAGAGCGACGACACCGGGAAGCACTTTGCCTTCCAAGAGCT 1583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77772 TGACTGGCGTTGCTTCATCAAGAGCGACGACACCGGGAAGCACTTTGCCTTCCAAGAGCT 77831 Query: 1584 CCAAACTGGCACCACCACCTGTGGAGATGTGACTCATGACTCCTGCTACTCCCACTTTCT 1643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77832 CCAAACTGGCACCACCACCTGTGGAGATGTGACTCATGACTCCTGCTACTCCCACTTTCT 77891 Query: 1644 CCACTGCTGCCACCGAGTCTCCTCCTCCTATTATCGTTGTCACTCCCTTTTTGCTTAGCT 1703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77892 CCACTGCTGCCACCGAGTCTCCTCCTCCTATTATCGTTGTCACTCCCTTTTTGCTTAGCT 77951 Query: 1704 CTGCTAGTTTATTCGCTACCGCCTGCGCCATTCAACCATGCTACATATTAGTTCCAACAA 1763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77952 CTGCTAGTTTATTCGCTACCGCCTGCGCCATTCAACCATGCTACATATTAGTTCCAACAA 78011 Query: 1764 AGAGTCAACTAACAGTATATAAGAGTCAGAGAATTATATGCACCTCAGTTCCTTTTGCAA 1823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78012 AGAGTCAACTAACAGTATATAAGAGTCAGAGAATTATATGCACCTCAGTTCCTTTTGCAA 78071 Query: 1824 ACTTTTCAAACTCGAAAACTCCCATTGGTCCATTCCAAAT-ACTGTCTGC 1872 |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 78072 ACTTTTCAAACTCGAAAACTCCCATTGGTCCATTCCAAATGACTGTCTGC 78121 MBK21 60510 Length = 79,125 Plus Strand HSPs: Score = 1162 (180.4 bits), Expect = 2.6e-46, P = 2.6e-46 Identities = 342/452 (75%), Positives = 342/452 (75%), Strand = Plus / Plus
Border_2 (18502_RBD)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTCCCGCCTTCTTCTCTCCTTCGT
CTCCCGTCAAGCTGCTTTAGCCATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGCAACAACGGTACGCTTTCTTTCTCRCTC
TATTAGCTCGCCGTATATTTCCTTATGCTCTGGCTCTGGGTTACGTTTTTTTTTATCCCTAGRGATTTTAAAGATGAGGTATCAAAATTTGGTGTTGATT
GAAACTTTTTACCGATCATTTTTTGGACCAAGAGTGTAAACCTAGCTTTTTGTTTGATATAGCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGA
ATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTG
TTAGTCATCTTAACCTCACATKKYYYYWWKGRWTKGGRWTTKSTTCACTGAATTGCTTTTTCATTGATAACATCTATCTCTAATTGCAAAATGATCATCT
TGTTCTTCTCTGCTTCTACACA
| Start of BLAST Alignment: | < 37 / Upstream |
| First 15 bp Perfect Match: | < 37 / Upstream |
BLAST Details: Query Sequence: 18502_RBD Length: (722 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g56200 68414.t05914 expressed protein 2498 3.3e-108 1 >At1g56200 68414.t05914 expressed protein Length = 1242 Plus Strand HSPs: Score = 2498 (380.8 bits), Expect = 3.3e-108, P = 3.3e-108 Identities = 504/535 (94%), Positives = 522/535 (97%), Strand = Plus / Plus Query: 186 TCTTCTCTCCTTCGTCTCCCGTCAAGCTGCTTTAGCCATGGCTATGGCGGCGTCTATTAT 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 TCTTCTCTCCTTCGTCTCCCGTCAAGCTGCTTTAGCCATGGCTATGGCGGCGTCTATTAT 60 Query: 246 CCAATCTTCTCCGCTCTCCTTCAATAGCAACAACGGTACGCTTTCTTTCTCRCTCTATTA 305 |||||||||||||||||||||||||||||||||||||||||||||||||||+|||||||| Sbjct: 61 CCAATCTTCTCCGCTCTCCTTCAATAGCAACAACGGTACGCTTTCTTTCTCACTCTATTA 120 Query: 306 GCTCGCCGTATATTTCCTTATGCTCTGGCTCTGGGTTACGNNNNNNNNNATCCCTAGRGA 365 |||||||||||||||||||||||||||||||||||||||| ||||||||+|| Sbjct: 121 GCTCGCCGTATATTTCCTTATGCTCTGGCTCTGGGTTACGTTTTTTTTTATCCCTAGGGA 180 Query: 366 TTTTAAAGATGAGGTATCAAAATTTGGTGTTGATTGAAACTTTTTACCGATCATTTTTTG 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 TTTTAAAGATGAGGTATCAAAATTTGGTGTTGATTGAAACTTTTTACCGATCATTTTTTG 240 Query: 426 GACCAAGAGTGTAAACCTAGCTTTTTGTTTGATATAGCAAAGCCACGGATTCATAGTTCA 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 GACCAAGAGTGTAAACCTAGCTTTTTGTTTGATATAGCAAAGCCACGGATTCATAGTTCA 300 Query: 486 GGATCGCTCGGCGGAATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 GGATCGCTCGGCGGAATCAAAAGCCAAAATAGAGTCTCTCCATTGAGTGCGGTTGGATTA 360 Query: 546 AGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTGTTAGT 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 AGCTCAGGCCTTGGAAGTAGAAGGAAATCTCTTTTGATATGTCACTCAGCCATTGTTAGT 420 Query: 606 CATCTTAACCTCACATKKYYYYWWKGRWTKGGRWTTKSTTCACTGAATTGCTTTTTCATT 665 ||||||||||||||||+++++++++|++|+||++||++|||||||||||||||||||||| Sbjct: 421 CATCTTAACCTCACATGTCTCTATGGATTGGGATTTGCTTCACTGAATTGCTTTTTCATT 480 Query: 666 GATAACATCTATCTCTAATTGCAAAATGATCATCTTGTTCTTCTCTGCT-TCTAC 719 |||||||||||||||||||||||||||||||||||||||||||| || | ||| | Sbjct: 481 GATAACATCTATCTCTAATTGCAAAATGATCATCTTGTTCTTCTTTGTTATCTCC 535