At4g14210 SYNGENTA 19414
Genomic Sequence (from TAIR)
aaatgtgtgtattccacaaagtttcgatcggattcggatggctccgttaaatataaggtgggttagggtatacttgggaatcacgagaaggaagatcatg attataacgaataagataacacagaattcatatctatttgacaccaactccaccaaaattatttatttttattttgtcgtagttactttggtgggcaaaa acatattagctgagaggtcaatttctttttcccctaaaccaaattacgttgagatgcatggtctctctctactcaattaaccaaataaggaaaagaatca tatggtcatcaattcgtaaatcaaaattttaatttgtgtggtatttaatccatctacatgtttcgtaagcaacaaaagagcttggtctgaaaaccaaaca agaccatatgggcactcgaatactccattttgttatcggctacttccactagcctcctccttcgctgcgtctcctgtttctctacttcacgattactcgc taggtaaaagataagatactaaacaactactatagcccctttaattcaagtccgtttttttttgttcttcttcttttcaattatgtgttaaagatacaaa cttttgtctgatttgcttccaccggtttcacctaagatactcaattttcttactttttgtgtgttttgtaattctaattcttttatagcttcaattttta gattcattgaagcagttgtgagttaagttggagaaaATGGTTGTGTTTGGGAATGTTTCTGCGGCGAATTTGCCTTATCAAAACGGGTTTTTGGAGGCAC TTTCATCTGGAGGTTGTGAACTAATGGGACATAGCTTTAGGGTTCCCACTTCTCAAGCGCTTAAGACAAGAACAAGGAGGAGGAGTACTGCTGGTCCTTT GCAGgtatctacctttctggtttttaacttggagttctcgaaatttcatctagtgtataagtgtaattttgattaaagagaggaaattgcagGTAGTTTG TGTGGATATTCCAAGGCCAGAGCTAGAGAACACTGTCAATTTCTTGGAAGCTGCTAGTTTATCTGCATCCTTCCGTAGTGCTCCTCGTCCTGCTAAGCCT TTGAAAGTTGTAATTGCTGGTGCTGgtatgtctacaacttcatttcttactgctttgtttgggatctgatggaattaatgttcatgtgatgaagttcttt tggctctcaaataattgcagGATTGGCTGGATTGTCAACTGCAAAGTACCTGGCTGATGCAGGCCACAAACCTCTGTTGCTTGAAGCAAGAGATGTTCTT GGTGGAAAGgtactttgattggtctcactttccgaattacttattgttgtttgcatttctcattcttatatgatttgctgattcccaaaggctgtaccaa ttatgtttgtgagactacaaggtataactagtgtttagagtgttacagctcctaggtacccaatgtatctgtcctgtttgttgtattagtcttgtactgc ccaatttgttttttattatgttctaatgtcttcagtcttgtgctacacaccgcacaaccctttccagtttctaggcttaatgtgaatcaaatatagagta gtttactggaagatatcttttggatatatattttgttaagttgttattgtgttctctggttcttaggttaggttcttgtttgttccgttttaacaattta cctatcttattggagagcgatatttatgatgtgatatttgtcttcctccagATAGCTGCATGGAAGGATGAAGATGGGGACTGGTATGAGACTGGTTTAC ATATTTTCTgtaagtccaaaactcataccctctctgttgctcccccaatatatttgttacatatatcttatcagctctaccatcaatttgaagaaagttg caaaacactggttaaattatattgtatcttgttttccctgttattacttttcgttactgatactctcttcatgttcttgttggaagTCGGTGCTTATCCG AATGTGCAGAATTTATTTGGAGAACTTGGGATCAATGATCGGTTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTA GTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaacttatcgcatattcttacttgctagtcagctgttataatattact gcttcaagtaattaaacttttaaactatctgatgaaaacagtggttgaactattagttagtggcgccatgtatttggtttgataaaattggattaatgtg cacacacttgttgaatgtaaaacaaagtatgatgtaattgagtaaaaaagtgaggttagtaactatgatgcatgtatttatttgtattgatcaattcaag ctaattatagattttgacatttaatagtaatcaaagaactgatgaatgtttgaggatatgaagtatctccatctaatttagacgtcaggaagaacatggt catttgtctttccaaagtaagaaattctagattttgagcttccccatactttaggatgggtaatcaaactgtaaaatattgttactggtcaaggcaagac gatataactgaactccgttgtagcattagcgctgaaatgttctgtggttgaattaatttgtttctggcaaataattaaagttgttgctgttggatttacg ttgtagGTATTTGGGCTATTTTGCGGAACAACGAGATGCTGACATGGCCAGAGAAAATAAAGTTTGCTATTGGACTTTTGCCAGCCATGGTCGGCGGTCA GGCTTATGTTGAGGCCCAAGATGGTTTATCAGTCAAAGAATGGATGGAAAAGCAGgcaagtaggctattgagttcacagtttctgtgagattctcgtaag catgttgatgagcttaacttggtagagtagttagcatgctgaatcatgtagtgttgatttgtcagctttcttatggatagctctgacttttctagtccat gtggttgttgtggtttcattgtcgtgcatgtgctttcactcagcagataataatacattctgattaattgtatacttgtccagGGAGTACCTGAGCGCGT GACCGACGAGGTGTTTATTGCCATGTCAAAGGCGCTAAACTTTATAAACCCTGATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTT CAGgtttgacactctagccctttatttctctttgttcttccttttgcctgtctttttgtgaatctttatctcactggcaatcatagttaccattcacatg gtcgacatgaaaactataatagaatttttttacccaaacaatacttgagtttgatgttgattaacttgtactacctcatcccaataatcagatgtttctc attttgaaacttattgtgtgtcataagctgcaacagatggttaggatattgtgaatttgcaaatgcaaactaatatgaactacattgacagGAAAAACAT GGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAGTAGTGGATCATATTCGATCACTAGGTGGGGAAGTGCAACTTAATT CTAGGATAAAGAAAATTGAGCTCAATGACGATGGCACGGTTAAGAGTTTCTTACTCACTAATGGAAGCACTGTCGAAGGAGACGCTTATGTGTTTGCCGC TCCAGgtttactaccatgctgtcttgtgggtttaacaattcatctggtatcctgcttattaatatgttgtttatgtttttcttgtagTCGATATCCTGAA GCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATGgttagtgaaa ccgttatctcccttgttttcttttggccattatgtgagaatcgagattacatgcaggtcttaactgctgtgaactaatattgcagGTTTGATCGAAAACT GAAGAACACATATGATCACCTACTCTTTAGCAGgtgaatttcttatttatgcagttttgaggaattatgtcttatagaatacttagttggatacagtgtt ggaaaaaaagaatacaagtgttttgtcttgaatcagcaacagttaaggcttgttcttggttaaacatttgttgtatattcaacaatcttgttttgttgtt ttttgcagAAGTAACCTTCTGAGCGTGTATGCCGACATGTCCTTAACTTGTAAGgtaagaacgcggcttgtttttctaaacgtgttcctccacttgttta tctatcataaattg◄gtgctctgtggatcttctcataatttttgatggcttatcttgattccgaatctgatt►caacaaagcgttttctttctatgataa actgtagGAATATTACGATCCTAACCGGTCAATGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACGGACTGATTCTGACATCATAGATGCA ACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCAAAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAGACTCCAAGgttag tgaagttgtaccatttatttagcttcaaatgagggaccaggctttacattgataaattcaacatctttctctattgttgcatgatcagATCTGTGTACAA GACCATCCCAAACTGTGAACCATGTCGTCCTCTACAAAGATCACCTATTGAAGGATTCTACTTAGCTGGAGATTACACAAAACAGAAGTACTTAGCTTCC ATGGAAGGCGCTGTCCTCTCTGGCAAATTCTGCTCTCAGTCTATTGTTCAGgtaaacacaagcttgccattcaaatagttaaccagtaaccttgttctct gtttcttgttggaatatatcgccaataaccggtcggtttacctgattttgtctcactattatactgttccggttatgtagagaaattgctaaagtcagaa tttactggttatacagGATTACGAGCTACTGGCTGCGTCTGGACCAAGAAAGTTGTCGGAGGCAACAGTATCATCATCATGAgaagaggacaaaacttaa agatgatttgcttgtaagcattattatttgtgtataaatctcattgcaatccaaacttaaccttactctcttcagtaaatgaatctcacagatttgacat ctcacgtttctgtcaattttataatttttaaaaagtaattactgtcgaccttttgtaatcatagtgatttatcattatgtctctctttttaaaacctttt ctggtacaaattataaaaggtcgatcatcattgattgatcaaggggtaaaaacaaatgttcatgaacaattaaaagaaacagaaaaaaaggaagacgatt gttttcaaccacaaaaattccatttgttttgttgttgaaggctatagctagctagggccggtaaggtctaaaaaggtctcttgcaagccacgtgagcggc gacctgaaatagcttttggcttgagtagtggatacagcaggtggtgtgatatgtacatcatacatacagtacaaaagacatcaaatatcttttgtttttt tt
Border_1 (19414_LB2U)
AATCGAATTCATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTAGTTGACGGTTAGGAGCGTC
AATTTGTTGTCAATTTATGATAGATAAACAAGTGGAGGAACACCGTTTAGAAAAACAAGCCGCGTTCTTACCTTACAAGTTAAGGACATGTCGGCATACA
CGCNTCAGAAGGTTACCTTCTGCAAAAAACAACAAAACAAGATTGTTGAATATACAACAAATGTTTAACCAAGAACAAGCCTTAACTGTTGCTGATTCAA
GACAAAACACTTGTATTCTTTTTTTCCAACACTGTATCCAACTAAGTATTCTATAAGACATAATTCCTCAAAACTGCATAAATAAGAAATTCACCTGCTA
AAGAGTAGGTGATCATATGTGTTCTTCTASYTTYCGAYCAAACCTGCAATATTAGTTCACAGCAGTTAAGACCTGCATGTAATCTCGATTCTCACATAAT
GGCCAAAAGAAAACAAGGGAGATAACGGTTTCACTAACCATATATGAACATTAATAACTGGTACTCCAACTAATTTATCCAATTTCTTGAAGTACGGTAT
TTCTTTCCAGGGATCTGGTAAAAGGAGCTTCAGGATATCGACTACAAGAAAAACATAAACANCATATTTAATAAGCAGGATACCAGATGAATTGTTAAAC
CCACAAGACAGCATGGTAGTAAACCCTGGAGCGGCAAACACATAAAGCGTTT
| Start of BLAST Alignment: | NT 3578 / Intron 12 of 14 |
| First 15 bp Perfect Match: | NT 3578 / Intron 12 of 14 |
BLAST Details: Query Sequence: 19414_LB2U Length: (752 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g14210 68417.t02077 phytoene dehydrogenase, chloroplas... 3073 8.9e-135 1 At1g49040 68414.t05030 stomatal cytokinesis defective / S... 191 0.98 1 >At4g14210 68417.t02077 phytoene dehydrogenase, chloroplast / phytoene desaturase (PDS) identical to SP|Q07356 Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana}; high similarity to phytoene desaturase [Lycopersicon esculentum][GI:19287] Length = 4840 Minus Strand HSPs: Score = 3073 (467.1 bits), Expect = 8.9e-135, P = 8.9e-135 Identities = 629/642 (97%), Positives = 633/642 (98%), Strand = Minus / Plus Query: 752 AAACGCTTTATGTGTTTGCCGCTCCAGGGTTTACTACCATGCTGTCTTGTGGGTTTAACA 693 | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 3275 AGACGCTT-ATGTGTTTGCCGCTCCAGG-TTTACTACCATGCTGTCTTGTGGGTTTAACA 3332 Query: 692 ATTCATCTGGTATCCTGCTTATTAAATATGNTGTTTATGTTTTTCTTGTAGTCGATATCC 633 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 3333 ATTCATCTGGTATCCTGCTTATTAA-TATGTTGTTTATGTTTTTCTTGTAGTCGATATCC 3391 Query: 632 TGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTTCAAGAAATTGGATAAAT 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3392 TGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTTCAAGAAATTGGATAAAT 3451 Query: 572 TAGTTGGAGTACCAGTTATTAATGTTCATATATGGTTAGTGAAACCGTTATCTCCCTTGT 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3452 TAGTTGGAGTACCAGTTATTAATGTTCATATATGGTTAGTGAAACCGTTATCTCCCTTGT 3511 Query: 512 TTTCTTTTGGCCATTATGTGAGAATCGAGATTACATGCAGGTCTTAACTGCTGTGAACTA 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3512 TTTCTTTTGGCCATTATGTGAGAATCGAGATTACATGCAGGTCTTAACTGCTGTGAACTA 3571 Query: 452 ATATTGCAGGTTTGRTCGRAARSTAGAAGAACACATATGATCACCTACTCTTTAGCAGGT 393 ||||||||||||||+|||+||++| ||||||||||||||||||||||||||||||||||| Sbjct: 3572 ATATTGCAGGTTTGATCGAAAACT-GAAGAACACATATGATCACCTACTCTTTAGCAGGT 3630 Query: 392 GAATTTCTTATTTATGCAGTTTTGAGGAATTATGTCTTATAGAATACTTAGTTGGATACA 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3631 GAATTTCTTATTTATGCAGTTTTGAGGAATTATGTCTTATAGAATACTTAGTTGGATACA 3690 Query: 332 GTGTTGGAAAAAAAGAATACAAGTGTTTTGTCTTGAATCAGCAACAGTTAAGGCTTGTTC 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3691 GTGTTGGAAAAAAAGAATACAAGTGTTTTGTCTTGAATCAGCAACAGTTAAGGCTTGTTC 3750 Query: 272 TTGGTTAAACATTTGTTGTATATTCAACAATCTTGTTTTGTTGTTTTTTGCAGAAGGTAA 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3751 TTGGTTAAACATTTGTTGTATATTCAACAATCTTGTTTTGTTGTTTTTTGCAGAAG-TAA 3809 Query: 212 CCTTCTGANGCGTGTATGCCGACATGTCCTTAACTTGTAAGGTAAGAACGCGGCTTGTTT 153 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3810 CCTTCTGA-GCGTGTATGCCGACATGTCCTTAACTTGTAAGGTAAGAACGCGGCTTGTTT 3868 Query: 152 TTCTAAACGGTGTTCCTCCACTTGTTTATCTATCATAAATTG 111 ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 3869 TTCTAAACG-TGTTCCTCCACTTGTTTATCTATCATAAATTG 3909 >At1g49040 68414.t05030 stomatal cytokinesis defective / SCD1 protein (SCD1) contains Pfam PF02141: DENN (AEX-3) domain; contains Pfam PF00400: WD domain, G-beta repeat (8 copies); identical to stomatal cytokinesis defective [Arabidopsis thaliana] GI:19743728; supporting cDNA gi|19743727|gb|AY082605.1|; PMID 12874123 Length = 9706 Minus Strand HSPs: Score = 191 (34.7 bits), Expect = 3.9, P = 0.98 Identities = 264/482 (54%), Positives = 265/482 (54%), Strand = Minus / Plus
Border_2 (19414_LB1D)
AATCAATTAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCAACAAAGCGTTTTCT
TTCTATGATAAACTGTAGGAATATTACCGATCCTAACCGGTCAATGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACNGGACYTGATTCTG
ACATCATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCAAAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAA
GACTCCAAGGTTAGTGAAGTTGTACCATTTATTTAGCTTCAAATGAGGGACCAGGCTTTACATTGATAAATTCAACATCTTTCTCTATTGTTGCATGATC
AGGTCTGTGTACAAGACCATCCCAAACTGTGAACCATGTCGTCCTCTACAAAGATCACCTATTGAAGGATTCTACTTAGCTGGAGATTMCACAAAACAGA
AGTACTTAGCTTCCATGGAAGGCGCTGTCCTCTCTGTC
| Start of BLAST Alignment: | NT 3635 / Intron 12 of 14 |
| First 15 bp Perfect Match: | NT 3635 / Intron 12 of 14 |
BLAST Details: Query Sequence: 19414_LB1D Length: (538 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g14210 68417.t02077 phytoene dehydrogenase, chloroplas... 2203 2.7e-94 1 >At4g14210 68417.t02077 phytoene dehydrogenase, chloroplast / phytoene desaturase (PDS) identical to SP|Q07356 Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana}; high similarity to phytoene desaturase [Lycopersicon esculentum][GI:19287] Length = 4840 Plus Strand HSPs: Score = 2203 (336.6 bits), Expect = 2.7e-94, P = 2.7e-94 Identities = 448/454 (98%), Positives = 449/454 (98%), Strand = Plus / Plus Query: 85 CAACAAAGCGTTTTCTTTCTATGATAAACTGTAGGAATATTACCGATCCTAACCGGTCAA 144 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3967 CAACAAAGCGTTTTCTTTCTATGATAAACTGTAGGAATATTAC-GATCCTAACCGGTCAA 4025 Query: 145 TGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCACNGGACYTGATTCTGACAT 204 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct: 4026 TGCTGGAGCTAGTATTTGCACCAGCAGAGGAATGGATATCAC-GGAC-TGATTCTGACAT 4083 Query: 205 CATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCA 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4084 CATAGATGCAACAATGAAAGAACTTGAGAAACTCTTCCCTGATGAAATCTCAGCTGACCA 4143 Query: 265 AAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAGACTCCAAGGTTAGTGAAGTTGTA 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4144 AAGCAAAGCTAAAATTCTGAAGTACCATGTCGTTAAGACTCCAAGGTTAGTGAAGTTGTA 4203 Query: 325 CCATTTATTTAGCTTCAAATGAGGGACCAGGCTTTACATTGATAAATTCAACATCTTTCT 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4204 CCATTTATTTAGCTTCAAATGAGGGACCAGGCTTTACATTGATAAATTCAACATCTTTCT 4263 Query: 385 CTATTGTTGCATGATCAGGTCTGTGTACAAGACCATCCCAAACTGTGAACCATGTCGTCC 444 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4264 CTATTGTTGCATGATCAGATCTGTGTACAAGACCATCCCAAACTGTGAACCATGTCGTCC 4323 Query: 445 TCTACAAAGATCACCTATTGAAGGATTCTACTTAGCTGGAGATTMCACAAAACAGAAGTA 504 ||||||||||||||||||||||||||||||||||||||||||||+||||||||||||||| Sbjct: 4324 TCTACAAAGATCACCTATTGAAGGATTCTACTTAGCTGGAGATTACACAAAACAGAAGTA 4383 Query: 505 CTTAGCTTCCATGGAAGGCGCTGTCCTCTCTGTC 538 |||||||||||||||||||||||||||||||| | Sbjct: 4384 CTTAGCTTCCATGGAAGGCGCTGTCCTCTCTGGC 4417