At5g20920 SYNGENTA 19520
Genomic Sequence (from TAIR)
atttaataagaaataaatcttaatttgaaaaaaaaaaaattgatttgataaaatttcaattgattaattaattaagacaaataaaataataaatgagaat ctcagtgtcaattaatagataaaattaaaatgtaacatgcgttaagaaaaagaaaaaagtaaaaatgtaatattaaggtttaggcaaaatgaaatattta cagagaccttttactattgaatt◄aaaaaaaaaagttacaatt◄cgagatggactatttttttggaggagcaagggttaactcttatctcagattaaaac aacc►cctgcgccgcttactctctctcagattcctcccgaagcaacctcgtttactctctacgccaatttcagcgcttagacatccctttgtgagttttc ttcgattccttttcgaattcttctggtcgatctcagagtaaatcgtgtttttggaagaattgagtataaacagattggtaaacctagctgttccgtttct gatttgaagccttgtcgtacattttatttgggtattttttttattgggaatcgaaaagttgttctgaatctcgttatggttttgttgcgttccgaattac ctctctgatttagaaaccctaatttcggacttgcctatgctcatcgttgttacagattatgttgattctaatatgtatatgtttggtttctgaggtctta ttatcattgtgtgttttcgttttgtatctcagttgcaatcATGGCTGATGAAATCAATGAGATAAGGGAAGAGCAAGAAgtaagtttgttttttttctct gtttcttaatgatagggctcaagttagccatatagatttttttttttgttttgtttgatgaactcatgattgaatggtttttatgttttggttcatcctt ttacagCAGCTCGCACCCTTTGATCCTTCCAAGAAGAAAAAGAAGAAGAAGGTTGTGATTCAGGAACCTGTCGAGGACTTAGCAGAGTCTTCACAGACTG AGAAATCTGATTCATTGCCTGgtatgtatgatgaagagtcaatgtgatgtgaaacattttttttgtttcaatggtcttttgtgttactttgtctaattcc ttgtttttgcagTTAATGATGGTCTTGAGAGTTCATTTACTGGAATGAAGAAAAAGAAGAAGAAGCCAgtgagtattgttttacgttttgtgcctagtat tttttttatgtcattaaacttgtgtgtttgatgattctgtgactcacatttgttcttgtttgatatttagACTGAATCAAGCTTATTGAACAACGAAAGT GTTGATGCTGGGGAAGATTTGGATGgtacttttaatatcctttttttttgtttgctaatataccttttctcttggcggggtttttatcctgtttgaatct tactgagaatatattgcagAGATTGCTAATGACGAGCAAGAGGGGGAAGAAGGAATAGTTCTACAGCAACGTTACCCCTGGGAGGGAAGTGAGAGGGATT ACATATATGACGAGgtgactatattttcgatgatttcttttgttttaatccttcataaatatcttgctcccttgtttttttgctgacgggagttatatat gcagCTTCTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGCGTCGTACAGTTATGAGGCCTCCTCAAGTTCTTCGT GAGGGGACAAAGAAGACTGTCTTTGTCAACTTCATGGACCTTTGCAAGACgtatgagctaactctttatcttcctcttcaaactttttctgtgtaaccat aagtaatattaccatttaattttgatgacttttcgatgacatgtcttatctgcatataaaaaatcagGATGCATCGTCAACCAGATCATGTTATGCAATA CTTGCTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAAGGTTGGTTGTTAAGGGAAGGTTTGCACCTAAGAATTTTGAAGGAATTTTGCGG CGATATATCAgtaagtaactttcttcttagtctcaaaatttaagttgccataaaagtatatcagtttggagttgttaacctcttgttttattatttctca gCTGACTACGTCATTTGCCTTGGTTGCAAGAGCCCAGACACCATTCTCTCCAAGGAGAACCGTCTCTTCTTTCTGAGATGTGAAAAGgtataagttaatc taattagtcctgatcttgatatgcattcctttgtttctgttttacagttttactttctgcgcaacaaagtaataaagtattttgtgtgtttgaatttgct aatgtgattaacgagtgggctacatggtttttgcagTGTGGATCTCAACGATCTGTGGCTCCGATCAAAACAGGGTTTGTTGCTCGTGTTAGTCGCAGGA AGACTTGAgaaattagaaggtgaagtgaccttggtatggagtttggagctattctactgcttctgtatgagtttatgagttgaagaaatacttgtcttgt tttttttattttgttttggaatatgattatgacttgacttttaaaatgggataggatcaaaaccttttactctgtcaggttcatgtggtcaccttgaagg ttgatttagtaaatccatggacttcttttttgtgttaagattattcttagttcaaaattaatagactaatgatattaacgtccacaggcattgcgttcaa catctcaaattaaagcgtggaaggctcagaaagtccaatatacactatgtttatctacagttacaatcatactacaaaaaacaaataatgtatacggttt ggtctaatatagccgcatacgatttagtatttaccaacaaaaaattggtctcaaaccaaaccgaacaattggtaattaacaattgttcttttggtcttga acc
Border_1 (19520_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAARCGTCCGCAATTTGTTTAATGTGTTACT
TTTTTTTTTAATTCAATAGTAAAAGGTCTCTGTAAATATTTCATTTTGCCTAAACCTTAATATTACATTTTTACTTTTTTCTTTTTCTTAACGCATATTA
CATTTTAATTTTATCTATTAATTGACACTGAGATTCTCATTTATTATTTTATTTGTCTTAATTAATTAATCAATTGAAAATTTATCAATTTTTTTTTTTT
TTTATCAAATTAAGATTTCTTTCTTATTAAATTCTGTGAATAGTAAATTATATAGAAATGTTATTAAATATAAATGAAACTAGTAAAGAAAGAAATCAGA
ATATGTTTAGTGTCAAAATTAATAGTCTAGCATATCTTATTTTACTATAAATTACTAAATTATATTATTTTATTATTTAATATATTAAGTATTTTAGTTT
GTTAGATATTCAGTAACAAAATTTCCGCAAATGCATTAATTTTCAACCGCTAA
| Start of BLAST Alignment: | < 495 / Upstream |
| First 15 bp Perfect Match: | < 514 / Upstream |
BLAST Details: Query Sequence: 19520_LB2U Border #1 Length: (653 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F22D1 68077 1313 3.9e-53 1 T9L6 51781 280 6.0e-05 1 F9L11 51903 280 6.0e-05 1 K11J14 60547 258 0.0015 1 F22D1 68077 Length = 96,102 Plus Strand HSPs: Score = 1313 (203.1 bits), Expect = 3.9e-53, P = 3.9e-53 Identities = 323/464 (69%), Positives = 323/464 (69%), Strand = Plus / Plus Query: 190 AATGTGTTACNNNNNNNNNNAATTCAATAGTAAAAGGTCTCTGTAAATATTTCATTTTGC 249 ||| ||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 40849 AAT-TGTAACTTTTTTTTTTAATTCAATAGTAAAAGGTCTCTGTAAATATTTCATTTTGC 40907 Query: 250 CTAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 309 ||||||| Sbjct: 40908 CTAAACCTTAATATTACATTTTTACTTTTTTCTTTTTCTTAACGCATGTTACATTTTAAT 40967 Query: 310 NNNNTCTATTAATTGACACTGAGATTCTCATTTATTATTTTATTTGTCTTAATTAATTAA 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40968 TTTATCTATTAATTGACACTGAGATTCTCATTTATTATTTTATTTGTCTTAATTAATTAA 41027 Query: 370 TCAATTGAAAATTTATCAANNNNNNNNNNNNNNNATCAAATTAAGATTTCTTTCTTATTA 429 |||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 41028 TCAATTGAAATTTTATCAAATCAATTTTTTTTTTTTCAAATTAAGATTTATTTCTTATTA 41087 Query: 430 AATTCTGTGAATAGTAAATTATATAGAAATGTTATTAAATATAAATGAAACTAGTAAAGA 489 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 41088 AATTCTGTGAATAGTAAATTATATAAAAATGTTATTAAATATAAATGAAACTAGTAAAGA 41147 Query: 490 AAGAAATCAGAATATGTTTAGTGTCAAAATTAATAGTCTAGCATATCTTATTTTANNNNN 549 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 41148 AAGAAATCAGAATATATTTAGTGTCAAAATTAATAGTCTAGCATATCTTATTTTACTATA 41207 Query: 550 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGTTAGATAT 609 ||||||||||||| Sbjct: 41208 AATTACTAAATTATATTATTTTATTATTTAATATATTAAGTATTTTAGTTTGTTAGATAT 41267 Query: 610 TCAGTAACAAAATTTCCGCAAATGCATTAATTTTCAACCGCTAA 653 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41268 TCAGTAACAAAATTTCCGCAAATGCATTAATTTTCAACCGCTAA 41311 T9L6 51781 Length = 90,632 Plus Strand HSPs: Score = 280 (48.1 bits), Expect = 6.0e-05, P = 6.0e-05 Identities = 132/215 (61%), Positives = 132/215 (61%), Strand = Plus / Plus
Border_2 (19520_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGCGCCGCTTACTCTCTCTCAGATTCCTCCCGAAGCAACCTCGTTTACTCTCTACGCCAGTTTCAGCGCTTAGACATCCCTTTGTGAGTTTTCTTCGA
TTCCTTTTCGAAATTCTTTGGTCGATCTCAAAGCAAATCGTGTTTTGGAAGAATTGAGTATAAACAGATTGGTAAACCTAGCTGTCCCGTTTCTGATTTG
AAGCCTTGTCGTACATTTTATTTGGGTATTTTTTATTGGGAATCGAAAATTTGTTCTGAATCTCCTTATGGTTTCGTTGCGTTCCGAATTACCTCTCTGA
TTTAGAAACCCTAATTTCGGACTTGCCTATGCT
| Start of BLAST Alignment: | < 435 / Exon 1 (Intron 1 in 5’ UTR) |
| First 15 bp Perfect Match: | < 435 / Exon 1 (Intron 1 in 5’ UTR) |
BLAST Details: Query Sequence: 19520_LB1D Length: (533 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g20920 68418.t02251 eukaryotic translation initiation ... 1547 1.5e-65 1 At5g20090 68418.t02166 expressed protein contains Pfam do... 227 0.024 1 At1g54790 68414.t05728 GDSL-motif lipase/hydrolase family... 185 0.97 1 >At5g20920 68418.t02251 eukaryotic translation initiation factor 2 subunit 2, putative / eIF-2-beta, putative similar to SP|P41035 Eukaryotic translation initiation factor 2 subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains Pfam profile PF01873: Domain found in IF2B/IF5 Length = 2397 Plus Strand HSPs: Score = 1547 (238.2 bits), Expect = 1.5e-65, P = 1.5e-65 Identities = 325/337 (96%), Positives = 325/337 (96%), Strand = Plus / Plus Query: 201 CCTGCGCCGCTTACTCTCTCTCAGATTCCTCCCGAAGCAACCTCGTTTACTCTCTACGCC 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20 CCTGCGCCGCTTACTCTCTCTCAGATTCCTCCCGAAGCAACCTCGTTTACTCTCTACGCC 79 Query: 261 AGTTTCAGCGCTTAGACATCCCTTTGTGAGTTTTCTTCGATTCCTTTTCGAAATTCTT-T 319 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 80 AATTTCAGCGCTTAGACATCCCTTTGTGAGTTTTCTTCGATTCCTTTTCGAA-TTCTTCT 138 Query: 320 GGTCGATCTCAAAGCAAATCGTGTTTT-GGAAGAATTGAGTATAAACAGATTGGTAAACC 378 ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 139 GGTCGATCTCAGAGTAAATCGTGTTTTTGGAAGAATTGAGTATAAACAGATTGGTAAACC 198 Query: 379 TAGCTGTCCCGTTTCTGATTTGAAGCCTTGTCGTACATTTTATTTGGGTATTTTTT--AT 436 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 199 TAGCTGTTCCGTTTCTGATTTGAAGCCTTGTCGTACATTTTATTTGGGTATTTTTTTTAT 258 Query: 437 TGGGAATCGAAAATTTGTTCTGAATCTCCTTATGGTTTCGTTGCGTTCCGAATTACCTCT 496 ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 259 TGGGAATCGAAAAGTTGTTCTGAATCTCGTTATGGTTTTGTTGCGTTCCGAATTACCTCT 318 Query: 497 CTGATTTAGAAACCCTAATTTCGGACTTGCCTATGCT 533 ||||||||||||||||||||||||||||||||||||| Sbjct: 319 CTGATTTAGAAACCCTAATTTCGGACTTGCCTATGCT 355 >At5g20090 68418.t02166 expressed protein contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) Length = 1653 Plus Strand HSPs: Score = 227 (40.1 bits), Expect = 0.024, P = 0.024 Identities = 169/286 (59%), Positives = 169/286 (59%), Strand = Plus / Plus