At2g26060 SYNGENTA 20933
Genomic Sequence (from TAIR)
aatgatttaatttgaaaaataaatttaagaatatgaccttcgagttctaagaaaattagcttgttaatattttttttattagaaatgaaaatttatctta gaataaaaatctcctcaatatctattttcaacctctttcaaagatttgaaaatattttttttttaatattagtaaataaaactaattaaataaaattaga aatcaaattgattttacttaaaaacactttaaagtttaaacctctaatctagcttttatttttgtaccgccattaaaaaataacgaacccaaaccgaact caaacccagacccaaacccatgcccatacacaaatcacgaatgcctaggcttacttgtgaccgaaaccgaattgaatcatatatagtttcaggtcacctg ttgcacaatctctgctcagccctaaaagcttactcctttcaactttctggaggccttctcgtagcctagcgtcatagATGGATTTGATGGAGAAGAACTT GGAGTTAGTGGAGATTCAGAAACTAGAAGGCCACACCGATCGTGTTTGGAGCGTAGCTTGGAACCCCGTTTCTTCTCACGCCGACGGTGTTTCACCGATT CTTGCTTCTTGCAGTGGCGATAACACTGTTCGAATCTGGGAACAAAGCTCTCTCTCTCGCTCCTGGACTTGCAAGgtctctatctcatttctctttctcg caagaaagttctagccttttttggacctagcaagttcaattcacaaaaatctattgattctctagatcagtcttacattacaatttgtgggttttgtttc gattcactaaagagattaacttgaccttaaacatggaatcgactggtgatttggatatggtgtaggactgttgtgttagttcttgtgctatttctctaga aagatttattgattgtatattgtgaatcttcagACAGTTTTGGAAGAGACGCATACAAGAACTGTGAGGTCGTGCGCTTGGTCACCCTCAGGACAGTTAT TGGCCACTGCAAGTTTTGATGGTACCACTGGCATTTGGAAGAATTACGGTTCTGAGTTTGAGTGTATTTCCACTTTGGAGgtactttctagcccaatcct tgaaccatccacaaattgtcaaattcttatccagaattagttctttgaacctgaaagcataacttttcacagctcctgtttgctcttttgactttgttct ttcttgatctttaatgctaagctcaaactctcatggagtttttcagtgttcacttcatagttcatatttaattatgctcaaagcttttggtggttttctt gtactgtctttatgctttgtatcgcacgtttttggctagtagaatcttattaaaaaaaatgtgtgtagGGACATGAAAACGAAGTCAAAAGTGTATCATG GAATGCATCTGGTTCATGCCTTGCAACATGTAGTAGAGATAAGTCTGTTTGGATTTGGGAAGTGCTTGAAGGGAATGAATATGACTGTGCTGCGGTATTA ACTGGGCATACACAAGATGTGAAGATGGTTCAGTGGCATCCCACCATGGATGTTTTATTTTCTTGCAGTTATGATAACACCATCAAGgtaatgcgaatac tctaattaggttttagtaatgcagaacttgaaatttattacacaaaaaaaaaaaaattatataattgaataacgctagtggcgtgctactcacagGTTTG GTGGTCTGAAGATGATGATGGTGAGTATCAATGTGTCCAAACCTTAGGTGAATCTAACAAgtatatcttctactttttcttatatgctttcgattttttt cttattaggctcttacttttgaagtagtagattaatatatgcctttcttcttcaaacagCGGTCACTCTTCAACGGTATGGTCCATCTCATTTAACGCTG CAGGGGACAAGATGGTCACTTGTAGgttagtgaatcttctctccttgtctcccataggcattctagaagcaatgtaatctgtctcttgggatattgttct tacagtagcaagcttgcctgaatgtgtatttgcagTGATGATCTAACCTTGAAGATATGGGGGACAGATATTGCCAAGATGCAGTCTGGTGAAGAATATG CACCTTGgtgagaaaatagtgggttattacatgtaatcgaatttatttgtttcttacgtttagagctggacgtagtatgtagcctacaagattatttgac ttcttcaagaatttttctccgtccaattttgactaatgtaatccttacttgctcggactttgcagGATTCATCTTTGTACTCTCTCTGGCTATCATGACC GTACCATATACTCAGCTCACTGGTCAAGgtattgacacctcacatgttttctttaaagcatcgtgtaactctgcctaatttctaaatctgccagcctaaa aggaaaaactctttgttgtacctgatatttacgctcccagtcatctgtcgaatgcatccaaattgggatttttaatgctctttcgtgagactgtgctgag tttaaactcagttttgttttgttttctttttattttaaatttttgacagGGACGACATTATTGCCAGTGGAGCAGGCGATAATGCTATACGGTTGTTTGT GGACAGCAAACATGACTCTgtaagttgaatttggttaatatctttccatatatacacgcctaacttacatatctcaatacaagaaaccaaatgcaggcag cagattctatctctcctagtcttgccaatggtttaccactatacaattaaacttttctgcttcatctttgaacttaaagtcattcttttgtgtaccagGT TGATGGACCTTCATATAATCTTTTGCTGAAGAAGAATAAAGCACATGAAAATGATGTAAACTCTGTCCAATGGTCACCCGGTgtaagttccatgtttctt atgaagtaatagacacaagtgcatactatttcgtacttgatacatggttgcaatgattaagtatagtctatatggcatcttataaatgtgaattagaagt tagaacataatactcaagcttagttttaggatcagagaaatgatgccattgattactcgacttacattggcccaagtacatgtggttatgttgtctatga ttttgaccttggaattgtaacctgctacagGAGGGGAACCGGTTGCTTGCGTCGGCTAGTGATGATGGGA◄►TG►GTCAAGATTTGG◄CAGCTTGCAACT AAACCGTGActgctgttggtttggataggttctgaaactcctgtgttgttttactttttctgaggtctatctgtaaacaacataacattttaggtagaag agaactctatactattttgtcatacaagattagctccatgatgtttcatacgatttctgttttacttttactacgatcacttaagttttaacactgttgg tacaactttgtggaatttaataaacaactttttgacgaaacaaaaaatacatagctgatatcgtacaactttggagaaacttcttttttccatataaata gcaaatttagatgcaactcatatggttgctgcttgtgcttgtaagatcttacaatattttttctttttgttaatacctaacaatacatttatttggatat tgtatgtttttttcttaagggcctccgaatatgtatatttttttcctttactatgacacatcacctctaaataatctacggattaggaaaaagagaacaa tttt
Border_1 (20933_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CTTCCCATCATCACTAGCCGACGCAAGCAACCGGTTCCCCTCCTGTAGCAGGTTACAATTCCAAGGTCAAAATCATAGACAACATAACCACATGTACTTG
GGCCAATGTAAGTCGAGTAATCAATGGCATCATTTCTCTGCTCCTCNCAAAA
| Start of BLAST Alignment: | NT 2707 / Exon 10 of 10 |
| First 15 bp Perfect Match: | NT 2693 / Exon 10 of 10 |
BLAST Details: Query Sequence: 20933_LB2D Length: (352 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g26060 68415.t02925 transducin family protein / WD-40 ... 709 2.3e-26 1 At5g28415 68418.t03144 copia-like retrotransposon family ... 188 0.26 1 >At2g26060 68415.t02925 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to WD40-repeat containing protein Ciao 1 (SP:O76071) [Homo sapiens] Length = 3022 Minus Strand HSPs: Score = 709 (112.4 bits), Expect = 2.3e-26, P = 2.3e-26 Identities = 151/158 (95%), Positives = 151/158 (95%), Strand = Minus / Plus Query: 345 AGGAGCAGAGAAATGATGCCATTGATTACTCGACTTACATTGGCCCAAGTACATGTGGTT 286 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2650 AGGATCAGAGAAATGATGCCATTGATTACTCGACTTACATTGGCCCAAGTACATGTGGTT 2709 Query: 285 ATGTTGTCTATGATTTTGACCTTGGAATTGTAACCTGCTACAGGAGGGGAACCGGTTGCT 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2710 ATGTTGTCTATGATTTTGACCTTGGAATTGTAACCTGCTACAGGAGGGGAACCGGTTGCT 2769 Query: 225 TGCGTCGGCTAGTGATGATGGGAAGAT-AT-ATTGTGG 190 ||||||||||||||||||||||| | | | ||| ||| Sbjct: 2770 TGCGTCGGCTAGTGATGATGGGATGGTCAAGATT-TGG 2806 >At5g28415 68418.t03144 copia-like retrotransposon family has a 1.2e-302 P-value blast match to dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] (AtRE1) (Ty1_Copia-element) Length = 4427 Plus Strand HSPs: Score = 188 (34.3 bits), Expect = 0.31, P = 0.26 Identities = 158/265 (59%), Positives = 158/265 (59%), Strand = Plus / Plus
Border_2 (20933_LB1U)
AATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTC
AATTTGTCAAGATTTGGCAGCTTGCAACTAAACCGTGACTGCTGTTGGTTTGGATAGGTTCTGAAACTCCTGTGTTGCTTTACTTTTTCTGAGGTCTATC
TGTAAACAACATAACATTTTAGGTAGAAGAGAACTCTATACTATTTTGTCATACAAGATTAGCTCCATGATGTTTCATACGATTTCTGTTTTACTTTTAC
TACGATCACTTAAGTTTTAACACTGTTGGTACAACTTTGTGGAATTTAATAAACAACTTTTTGACGAAACAAAAAATACATAGCTGATATCGTACAACTT
TGGAGAAACTTCTTTTTTCCATATAAATAGCAAATTTAGATGCAACTCATATGGTTGCTGCTTGTGCTTGTAAGATCTTACAATATTTTTTCTTTTTGTT
AATACCTAACAATACATTTATTTGGATATTGGATGTTTTTTTCTTAAGGGCCTCCGAATATGTATATTTTTTTCCTTTACTATGACACATCACCTCTAAA
TAATCTACGGATTAGGAAAAAGAGAACAATTTTTTAAGAATAACATAATTTTGGAGTTGAAAGCTARATGGTGCCCGAAAGGAAAAGAGAACMATTCTTA
AGAATAACATAATTTTGGGGAWMCMCATAATTAWATTTCTCTCATACYGNTTCAAGGAAATTATGKT
| Start of BLAST Alignment: | NT 2693 / Exon 10 of 10 |
| First 15 bp Perfect Match: | NT 2695 / Exon 10 of 10 |
BLAST Details: Query Sequence: 20933_LB1U Length: (767 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g26060 68415.t02925 transducin family protein / WD-40 ... 1132 1.1e-45 1 At2g26070 68415.t02926 expressed protein 324 1.2e-06 1 At3g47600 68416.t04811 myb family transcription factor (M... 208 0.42 1 At3g59120 68416.t06101 DC1 domain-containing protein cont... 208 0.43 1 >At2g26060 68415.t02925 transducin family protein / WD-40 repeat family protein contains 7 WD-40 repeats (PF00400); similar to WD40-repeat containing protein Ciao 1 (SP:O76071) [Homo sapiens] Length = 3022 Plus Strand HSPs: Score = 1132 (175.9 bits), Expect = 1.1e-45, P = 1.1e-45 Identities = 228/230 (99%), Positives = 228/230 (99%), Strand = Plus / Plus Query: 104 TTGTCAAGATTTGGCAGCTTGCAACTAAACCGTGACTGCTGTTGGTTTGGATAGGTTCTG 163 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2793 TGGTCAAGATTTGGCAGCTTGCAACTAAACCGTGACTGCTGTTGGTTTGGATAGGTTCTG 2852 Query: 164 AAACTCCTGTGTTGCTTTACTTTTTCTGAGGTCTATCTGTAAACAACATAACATTTTAGG 223 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2853 AAACTCCTGTGTTGTTTTACTTTTTCTGAGGTCTATCTGTAAACAACATAACATTTTAGG 2912 Query: 224 TAGAAGAGAACTCTATACTATTTTGTCATACAAGATTAGCTCCATGATGTTTCATACGAT 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2913 TAGAAGAGAACTCTATACTATTTTGTCATACAAGATTAGCTCCATGATGTTTCATACGAT 2972 Query: 284 TTCTGTTTTACTTTTACTACGATCACTTAAGTTTTAACACTGTTGGTACA 333 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2973 TTCTGTTTTACTTTTACTACGATCACTTAAGTTTTAACACTGTTGGTACA 3022 >At2g26070 68415.t02926 expressed protein Length = 1484 Minus Strand HSPs: Score = 324 (54.7 bits), Expect = 1.2e-06, P = 1.2e-06 Identities = 71/85 (83%), Positives = 78/85 (91%), Strand = Minus / Plus