At2g28000 SYNGENTA 21157
Genomic Sequence (from TAIR)
aagtttaaatttaaatttaatttgactatttgtgactatttatattttgcagttttcattatcattttttttaacaaaatctaaatactattttttatat acaaaatgacctaatatgtatccatttaccttaaacctcttatattttaaaacagagtgagtacattcagtaagagaatggataaaaacgaatttggaat acacaaactataaaagtttcttgagtactgtttctattattgggccataaacagtgagacaaacaggcccatagaagtaggtgaaaaaggcttattaaga tcaacggttctctcgttacgaatgcaaagaatcttctggatcctttttctctcagctactctctccatttatctaataaaccctaacccctcctcccaca ctattcgtttacactaaccacttccttatccacaccaatccagaacgttcctcaaaaagctccctccttttctctcaaaATGGCGTCTGCAAACGCTCTC TCTTCCGCCTCCGTCCTCTGTTCTTCCCGTCAGgtacaaagtttgttcctttttaccttccttagctacttactaaagaagaaaatgaatcatctttcat tactttgttttgattggatttgacccttcagtgttatctattttcaaaaacctttctctatctggtttattgggtttttgaagaaagtgattgaatttga ccctttagtttgttctgtttcaattcaattgcttttctctatttggtttctgggttggtgagaaaaggttaatttttatgggaattagaagaaactgatt gagattaatgttaatgaatctgctttattgatgttgtgggtatacagAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGGTCAGAGAGTTAGCTACAACAA GAGGACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAAGGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGCT GATTGTGTTGGTC◄TCACT◄CTTGGCCCTAGAGgt►att►tgttaatattagtagctcctttactctttccatcttcatctgtgttatttatctttcgac ttatcttggtgttttcatttgttattcttaagGGAGGAATGTTGTGTTGGATGAATTTGGAAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGA GCTATTGAGTTACCTAATGCCATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGgttggtgtagctttgttattgtctctgttaatgctatttatacggt gcggtaatctggtgttgttatgtggtagGTTGCGAGTAAGACTAATGACTCTGCTGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATC AAACATGGATTGTTGAGCGTCACTTCTGGTGCGAATCCCGTTTCACTCAAGAGGGGAATTGATAAGACTGTTCAAGGTCTGATCGAAGAGCTTCAGAAGA AAGCTAGGCCCGTGAAAGGTCGTGATGACATCAGAGgtactaactttgcagtgaccttccttgtgatgcagcaatgtttgatttcttttactgatcaatc tgttcttttttttttttccagCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGCCATCGACAAAGTTGGACCTGA TGGTGTTTTGTCCATTGAATCTTCATCTTCTTTTGAGACCACGGTCGAAGTTGAAGAAGGGATGGAGgtatgagtttttttgtcttgcttctcttcaact gtaattttattcaccattcattgccaatgactaacttgattatttacagATTGACAGAGGTTACATCTCGCCTCAGTTTGTTACAAACCCTGAGAAACTA CTAGCTGAGTTTGAGAATGCTAGGGTATTGATCACTGATCAGAAGATCACTGCGATCAAAGACATCATCCCTATTTTGGAGAAGACCACTCAGCTTCGTG CTCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAACAAGCTTCGTGGTGTCCTCAATGTTGTTGCCGTTAAAGC GCCAGGATTTGGAGAAAGAAGAAAAGCCATGCTTCAAGATATTGCAATCTTGACAGgtatatgcagatttcgcgtgcgtttagtacttttactttctctc tgttatggtctaaactttttatcattttgtatgtttttcagGAGCTGAGTACCTAGCCATGGACATGAGCTTACTGGTTGAAAACGCAACCATAGATCAA TTGGGTATTGCCCGAAAAGTCACGATTAGCAAAGATTCGACTACCCTCATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCGGATTGCTCAGCTGA AGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCAGAGAAGCTCGCTGAGAGAATTGCGAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGC AGCAACTGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAGAACGCAACATTTGCTGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGT GCTGCTTTGGTGCATCTCTCCACTGTTATTCCCGCCATTAAGGAGACTTTTGAGGATGCTGATGAACGTTTGGGAGCTGACATAGTACAAAAGgtagcat ttagtttttcggttcagtatttgttctgtaaccaattgtgactagttatcttataagggtttatgttttgagttcagGCATTGCTGTCACCAGCTGCTCT TATTGCTCAGAACGCTGGAGTTGAAGGAGAAGTTGTTGTGGAAAAGATTATGTTCAGCGATTGGGAGAATGGGTACAACGCAATGACTGATACATATGAG AATCTGTTCGAAGCTGGAGTGATTGATCCGGCTAAAGTGACAAGATGTGCGCTACAGAACGCTGCTTCCGTAGCAGGAATGGTACTGACCACTCAGGCCA TTGTTGTTGACAAACCGAAACCCAAGGCTCCTGCTGCTGCTGCTCCTGAGGGTCTCATGGTGTAAtcaaaacacaacatcttatcatcacaatggcatct ttgtctttttgcacatttgtcatccccatttatctgcaatgtttttcttttttgggggaatatgagtagtttgttaacagtatcgagaaataattatcat cttttttgtccaatggaaattgcagaaaatggttatgtatgcgaccaaacattttatatgtagcgagagtagtttagcagaacaataagcaaatatgcgt acaaactgaataatgttccaacttactatactattaaactaggagggaacaatgttttttcatgcctttactagttttctcataaaacttgatctggata ttgcacttcgatgatctacgaaccattagcagatctccggtgattcgatacttctccttgtcgtttattgcacaggcacgaactttgacaagcacaagac atga
Border_1 (21157_RBD)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGTGTGACCAACACAATCAGCAAGCTTATCAATACCAGCTTGTAGAGCAGCTCTAGAGTGCTGGTCAAAAGCTATTTCCTTTACATTAGCTCTAACACT
AAAACGTCTGATTGTCCTCTTGTTGTAGCTAACTCTCTGACCTTGCTGCTGATTTCCTCCTCCCAACTTACTCTGTATACCCACAACATCAATAAAGCAG
ATTCATTAACATTAATCTCAATCAGTTTCTTCTCATCTCGACCA
| Start of BLAST Alignment: | NT 539 / Exon 2 of 8 |
| First 15 bp Perfect Match: | NT 534 / Exon 2 of 8 |
BLAST Details: Query Sequence: 21157_RBD Length: (444 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g28000 68415.t03155 RuBisCO subunit binding-protein al... 1157 7.1e-47 1 >At2g28000 68415.t03155 RuBisCO subunit binding-protein alpha subunit, chloroplast / 60 kDa chaperonin alpha subunit / CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha) [Arabidopsis thaliana] Length = 2924 Minus Strand HSPs: Score = 1157 (179.6 bits), Expect = 7.1e-47, P = 7.1e-47 Identities = 233/235 (99%), Positives = 233/235 (99%), Strand = Minus / Plus Query: 436 ATGAGAAGAAACTGATTGAGATTAATGTTAATGAATCTGCTTTATTGATGTTGTGGGTAT 377 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 ATTAGAAGAAACTGATTGAGATTAATGTTAATGAATCTGCTTTATTGATGTTGTGGGTAT 501 Query: 376 ACAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGGTCAGAGAGTTAGCTACAACAAGAG 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 ACAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGGTCAGAGAGTTAGCTACAACAAGAG 561 Query: 316 GACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAAGGAAATAGCTTTTGACCAGCACTC 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 GACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAAGGAAATAGCTTTTGACCAGCACTC 621 Query: 256 TAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGCTGATTGTGTTGGTCACACT 202 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 622 TAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGCTGATTGTGTTGGTCTCACT 676
Border_2 (21157_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATGTGTTAATATTAGTAGCTC
CTTTACTCTTTCCATCTTCATCTGTGTTATTTATCTTTCGACTTATCTTGGGTTTTCATTTGTTATTCTTAAGGGAGGAATGTTGTGTTGGATGAATTTG
GAAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAATGCCATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGG
TGTAGCTTTGTTATTGTCTCTGTTAATGCTATTTATACGGTGCGGTAATCTGGTGTTGTTATGTGGTAGGTTGCGAGTAAGACTAATGACTCTGCTGGTG
ATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTTGAGCGTCACTTCTGGTGCGAATCCGTTTCACTCAAGAGGGGAATT
GATAAGACTGTTCAAGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAAGGTCGTGATGACATCAGAGGTACTAACTTTGCAGTGACCTTCC
TTG
| Start of BLAST Alignment: | NT 554 / Intron 2 of 7 |
| First 15 bp Perfect Match: | NT 557 / Intron 2 of 7 |
BLAST Details: Query Sequence: 21157_LBU Length: (703 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g28000 68415.t03155 RuBisCO subunit binding-protein al... 2591 8.7e-113 1 At5g18820 68418.t02025 chaperonin, putative similar to SW... 498 8.8e-17 1 At5g56500 68418.t06543 chaperonin, putative similar to SW... 232 2.2e-06 2 At2g22570 68415.t02515 isochorismatase hydrolase family p... 187 0.99 1 >At2g28000 68415.t03155 RuBisCO subunit binding-protein alpha subunit, chloroplast / 60 kDa chaperonin alpha subunit / CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha) [Arabidopsis thaliana] Length = 2924 Plus Strand HSPs: Score = 2591 (394.8 bits), Expect = 8.7e-113, P = 8.7e-113 Identities = 523/526 (99%), Positives = 523/526 (99%), Strand = Plus / Plus Query: 180 ATGTGTTAATATTAGTAGCTCCTTTACTCTTTCCATCTTCATCTGTGTTATTTATCTTTC 239 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 ATTTGTTAATATTAGTAGCTCCTTTACTCTTTCCATCTTCATCTGTGTTATTTATCTTTC 751 Query: 240 GACTTATCTTGG-GTTTTCATTTGTTATTCTTAAGGGAGGAATGTTGTGTTGGATGAATT 298 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 GACTTATCTTGGTGTTTTCATTTGTTATTCTTAAGGGAGGAATGTTGTGTTGGATGAATT 811 Query: 299 TGGAAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAA 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 TGGAAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAA 871 Query: 359 TGCCATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGGTGTAGCTTTGTTATTGTC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 TGCCATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGGTGTAGCTTTGTTATTGTC 931 Query: 419 TCTGTTAATGCTATTTATACGGTGCGGTAATCTGGTGTTGTTATGTGGTAGGTTGCGAGT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 932 TCTGTTAATGCTATTTATACGGTGCGGTAATCTGGTGTTGTTATGTGGTAGGTTGCGAGT 991 Query: 479 AAGACTAATGACTCTGCTGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 992 AAGACTAATGACTCTGCTGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATA 1051 Query: 539 ATCAAACATGGATTGTTGAGCGTCACTTCTGGTGCGAATCC-GTTTCACTCAAGAGGGGA 597 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1052 ATCAAACATGGATTGTTGAGCGTCACTTCTGGTGCGAATCCCGTTTCACTCAAGAGGGGA 1111 Query: 598 ATTGATAAGACTGTTCAAGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAA 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 ATTGATAAGACTGTTCAAGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAA 1171 Query: 658 GGTCGTGATGACATCAGAGGTACTAACTTTGCAGTGACCTTCCTTG 703 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 GGTCGTGATGACATCAGAGGTACTAACTTTGCAGTGACCTTCCTTG 1217 >At5g18820 68418.t02025 chaperonin, putative similar to SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit, CPN-60 alpha)[Pisum sativum]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family Length = 2605 Plus Strand HSPs: Score = 498 (80.8 bits), Expect = 8.8e-17, P = 8.8e-17 Identities = 248/384 (64%), Positives = 248/384 (64%), Strand = Plus / Plus