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At5g67570 SYNGENTA 21281

Genomic Sequence (from TAIR)

gtcatttgatgatgatgatggtgattgtggaagaagacacagcttttttcttttatcctgtgaaaaacaagatttgtctatgttctctgtctgattcttt
atctgtctttcttctgcgtatgtggctgtgttctctgtatattagatttgattggtgttccctcttcttaaagccatgatgagatcacttccttcggggt
cagctttttcaattttacgagttcattgcatgttttgaaagaacaacaaaatatgttgcgtttttcgtaattttgaaaaacttgaggccaaaaacggata
ttttcgaaaaaagcaacaagataaaataaaagatttttccttttactctcacttgcactatcctcctcttcgcaacaATGGATGCTTCGGTGGTGAGATT
TTCCCAATCGCCGGCAAGAGTGCCACCGGAATTTGAACCAGATATGGAGAAGATTAAACGGAGGCTGCTCAAGTACGGTGTTGATCCAACCCCCAAAATC
CTGAACAATCTCCGAAAGAAAGAAATTCAAAAACACAACCGTAGAACCAAGCGCGAAACCGAGTCCGAGGCGGAGGTGTATACGGAGGCGCAGAAACAAT
CAATGGAGGAAGAAGCTCGTTTTCAAACCCTTAGACGGGAATACAAGCAATTCACGAGGTCAATTTCTGGAAAAAGGGGCGGCGATGTTGGTTTGATGGT
TGGGAATCCATGGGAAGGAATCGAGAGAGTGAAGCTGAAGGAGCTCGTTAGTGGCGTTCGGAGAGAAGAGGTTAGTGCTGGTGAATTGAAGAAAGAGAAT
CTAAAAGAGTTGAAGAAGATACTTGAGAAGGATCTTCGTTGGGTTCTAGACGACGACGTTGATGTGGAAGAATTTGATTTGGACAAAGAATTTGATCCTG
CGAAACGGTGGCGTAACGAAGGAGAAGCAGTCAGAGTTCTCGTTGACAGgtttgaacactctttttgtatttcaatttctgcaaaactttgattcatgaa
gaaattgttcgatt►gaatt◄gtgtgatttagATTGAGTGG►TAGAGAAATCAATGAGAAGCATTGGAAGTTTGTGAGAATGATGAATCAATCAGGGCTT
CAGTTCACTGAAGATCAGATGCTTAAGATCGTTGATCGATTGGGACGTAAACAGAGCTGGAAACAAGCTTCAGCTGTTGTTCATTGGGTGTATTCTGATA
AAAAGCGTAAACATCTTAGGAGCAGgtaatgtattcctggcgaaaagatttcaactttcatggccatagaatctgtaaaacttgatttctgattgtatac
aagactggtttctacagATTTGTTTACACCAAGCTTTTGTCCGTTCTTGGGTTTGCGAGGAGGCCACAGGAAGCTCTTCAGATATTCAATCAGATGCTTg
taagtggcttctgatttaagtcagttcgtgatatggttgatgtagatgatcgttgtactatagcatcttgcgttttttggattaactctcattccttagt
cactttagGGTGATCGCCAGTTATATCCTGATATGGCGGCGTACCACTGTATTGCTGTAACACTTGGGCAAGCGGGTTTATTGAAGGAGTTGCTTAAAGT
AATCGAGCGTATGAGGCAGAAACCGACTAAACTAACTAAGAATTTGCGGCAAAAGAACTGGGATCCTGTGCTTGAACCTGACTTGGTTGTATACAACGCT
gtaagtgagcatttccgagttttaaacttcgtttaatatctatatgcactatgcagcgaatcactgtatcttattgctgtgtgatcaattcttggcttca
ctggttcccagATTCTTAACGCTTGTGTTCCAACACTCCAATGGAAGGCTGTTTCATGGGTATTTGTAGAGTTAAGAAAAAATGGTTTGAGGCCTAATGG
AGCTACATATGGGCTTGCGATGGAGgtagcgttcttttttccaacataaacgaactgctgtggtgtagtatttgtgggtaccctcaaatatgtagggtgg
tcttaagatgtcattttgacagGTTATGCTGGAGTCAGGGAAGTTTGATCGTGTTCACGATTTTTTTAGGAAGATGAAAAGCAGTGGCGAAGCTCCAAAA
GCAATCACATACAAGGgtaaatattgattctctctgtatatttaggttacttcattttggtatctataaggtgatatgattcttatagcgtatgattgat
tctcagTTCTTGTCCGAGCTCTCTGGAGAGAAGGCAAGATCGAAGAAGCTGTTGAAGCAGTCAGAGATATGGAACAAAAGGGAGTTATAGGAACGGGTTC
AGTTTACTATGAATTGGCATGCTGTCTGTGCAACAACGGGCGTTGGTGCGATGCAATGCTCGAAgcaagttccctcctactttaccctttttgcttctca
gagaaacccacaaaattaactttcttcataattcattaatgcagGTGGGGAGGATGAAAAGACTTGAAAATTGCAGGCCGCTCGAGATTACCTTCACAGG
ACTCATAGCCGCTTCATTGAACGGTGGTCATGTTGATGATTGCATGGCTATATTCCAATATATGAAAGATAAATGTGATCCGAATATAGGAACTGCGAAC
ATGATGCTTAAAGTTTACGGAAGGAATGATATGTTTTCAGAAGCTAAAGAATTGTTTGAAGAGATTGTCAGCAGAAAAGAGACTCATTTAGTTCCAAACG
AGTATACATACAGCTTCATGCTTGAAGCTTCAGCTAGATCACTGCAATGGGAATACTTTGAACATGTGTATCAAACGATGGTTCTTTCTGGTTACCAAAT
GGATCAAACAAAACATGCATCAATGCTGATAGAAGCATCAAGAGCCGGGAAGGTAACAAATCTTTGTCTAGTTTAAgtgtttatggaagcataagctgtt
gtctaattttgtttgttaatgcagtggagtcttctagagcatgccttcgatgcagtacttgaagatggagaaatccctcacccattgttcttcactgaac
tgttgtgtcatgccacagctaaaggcgatttccaaagagctatcacactgattaacactgtggctctcgcatctttccagattagtgaagaagaatggac
tgatctttttgaggagcatcaagactggcttactcaagataatcttcataagctctcggatcatctcattgagtgtgattatgtaagtgaaccaacggtc
tcaaacctctcaaagtcattgaaatctcgatgtgggtcttcttcttcttcagcacaaccattgttagccgtagatgtaacaactcaaagtcagggcgaaa
aac

Border_1 (21281_AbB)


GGCAGCGCCGGAGAGTTCAAGAAGTTCTGTTTCACCGTGCGCAAGCTGATCGGGTCAAATGACCTGCCGGAGTACGATTTGAAGGAGGAGGCGGGGCAGG
CTGGCCCGATCCTAGTCATGCGCTACCGCAACCTGATCGAGGGCGAAGCATCCGCCGGTTCCTAATGTACGGAGCAGATGCTAGGGCAAATTCAATCGAA
CAATTTCTTCATGAATCAAAGTTTTGCAGAAATTGAAATACAAAAAGAGTGTTCAAACCTGTCAACGAGAACTCTGACTGCTTCTCCTTCGTTACGCCAC
CGTTTCGCAGGATCAAATTCTTTGTCCAAATCAAATTCTTCCACATCAACGTCGTCGTCTAGAACCCAACGAAGATCCTTCTCAAGTATCTTCTTCAACT
CTTTTAGATTCTCTTTCTTCAATTCACCAGCACTAACCTCTTCTCTCCGAACGCCACTAACGAGCTCCTTCAGCTTCACTCTCTCGATTCCTTCCCATGG
ATTCCCAACCATCAAACCAACATCGCCGCCCCTTTTTCCAGAAATTGACCTCGTGAATTGCTTGTATTCCCGTCTAAGGGTTTGAAAACGAGCTTCTTCC
TCCATTGATTGTTTCTGCGCCTCCGTATACACCTCCGCCTCGGACTCGGTTTCGCGCTTGGTTCTACGGTTGTGTTTTTGAATTTCTTTCTTTCGGAGAT
TGTTCAGGATTTTGGGGGTTGGATCAACACCGTACTTGAGCAGCCTCCGTTTAATCTTCTCCATATCTGGTTCAAATTCCGGTGGCACTCTTGCCGGCGA
TTGGGAAAATCTCACCACCGAAGCATCCATTGTTGCGAAGAGGAGGATAGTGCAAGTGAGAGTAAAAGGAAAAATCTTTTATTTTATCTTGTTGCTTTTT
TCGAAAATATCCGTTTTTGGCCTCAAGTTTTTCAAAATTACGAAAAACGCAACATATTTTGTTGTTCTTTCAAAACATGCAATGAACTCGTAAAATTGAA
AAAGCTGACCCCGAAGGAAGTGATCTCATCATGGCTTTAAGAAGAGGGAACACCAATCAAATCTAATATACAGAGAACACAGCCACATACGCAGAAGAAA
GACAGATAAAGAATCAGACAGAGAACATAGACAAATCTTGTTTTTCACAGGATAAAAGAAAAAAGCTGTGTCTTCTTCCACAATCACCATCATCATCATC
AAATGACCAAAAACACAAGAAAGATCGACAACTGCAGAGAGTTGACTTCTCTCCTTTTGGGGTAAAGTTTAATTCGATGATTTGGAGTGCTTTACAAGCC
AATCAATGACTTGATCGATGTTGGTAGAGTTCTTGCAAGATATCATGAAGCAACAGACTTCTCTATCTGTCAGTGACTTGAGACCCCTGTGGCAAACAAT
GGAAAATAAAACATTATTAGAATCAAAGTAAAAAATGCCAAGTCCATTGTCGTGTTTTAGGTTTTAGGCTTACATTTCATCGGTTAGGGCTTCTTTGGAC
AAAGCTCCAGGCTTGTCGATTTTGTTCCCAAGGACTAGGAGAGGGATACCATTAAGCGACGTCTTGCTCAACAAATCATGGAGTTCACTCTTCGAGACAC
TGAGGTTATCAGGATCAGCAGCATCAACTACATACCTGAAAGCAGAATCAGAGTCAGAGAGTTTTAATCATCTGAAACCTAAATAAAGATAGTACGAAAA
CTAATTTCAAGAGAGATTTACACAATCGCGGAA

Start of BLAST Alignment:	NT 642 / Intron 1 of 7
First 15 bp Perfect Match:	NT 642 / Intron 1 of 7

BLAST Details:
Query Sequence: 21281_AbB 
Length: (1733 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g67560 68418.t07848 ADP-ribosylation factor, putative ...  3680  9.1e-162  1
At5g67570 68418.t07849 pentatricopeptide (PPR) repeat-con...  3345  8.9e-147  1
At3g49870 68416.t05067 ADP-ribosylation factor, putative ...  1265  1.2e-52   1
At3g49860 68416.t05066 ADP-ribosylation factor, putative ...   709  1.9e-26   1


>At5g67570 68418.t07849 pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profile PF01535: PPR repeat
        Length = 2523

  Minus Strand HSPs:

 Score = 3345 (507.9 bits), Expect = 8.9e-147, P = 8.9e-147
 Identities = 669/669 (100%), Positives = 669/669 (100%), Strand = Minus / Plus

Query:   857 ACTTGCACTATCCTCCTCTTCGCAACAATGGATGCTTCGGTGGTGAGATTTTCCCAATCG 798
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1 ACTTGCACTATCCTCCTCTTCGCAACAATGGATGCTTCGGTGGTGAGATTTTCCCAATCG 60

Query:   797 CCGGCAAGAGTGCCACCGGAATTTGAACCAGATATGGAGAAGATTAAACGGAGGCTGCTC 738
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    61 CCGGCAAGAGTGCCACCGGAATTTGAACCAGATATGGAGAAGATTAAACGGAGGCTGCTC 120

Query:   737 AAGTACGGTGTTGATCCAACCCCCAAAATCCTGAACAATCTCCGAAAGAAAGAAATTCAA 678
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   121 AAGTACGGTGTTGATCCAACCCCCAAAATCCTGAACAATCTCCGAAAGAAAGAAATTCAA 180

Query:   677 AAACACAACCGTAGAACCAAGCGCGAAACCGAGTCCGAGGCGGAGGTGTATACGGAGGCG 618
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   181 AAACACAACCGTAGAACCAAGCGCGAAACCGAGTCCGAGGCGGAGGTGTATACGGAGGCG 240

Query:   617 CAGAAACAATCAATGGAGGAAGAAGCTCGTTTTCAAACCCTTAGACGGGAATACAAGCAA 558
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   241 CAGAAACAATCAATGGAGGAAGAAGCTCGTTTTCAAACCCTTAGACGGGAATACAAGCAA 300

Query:   557 TTCACGAGGTCAATTTCTGGAAAAAGGGGCGGCGATGTTGGTTTGATGGTTGGGAATCCA 498
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   301 TTCACGAGGTCAATTTCTGGAAAAAGGGGCGGCGATGTTGGTTTGATGGTTGGGAATCCA 360

Query:   497 TGGGAAGGAATCGAGAGAGTGAAGCTGAAGGAGCTCGTTAGTGGCGTTCGGAGAGAAGAG 438
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   361 TGGGAAGGAATCGAGAGAGTGAAGCTGAAGGAGCTCGTTAGTGGCGTTCGGAGAGAAGAG 420

Query:   437 GTTAGTGCTGGTGAATTGAAGAAAGAGAATCTAAAAGAGTTGAAGAAGATACTTGAGAAG 378
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   421 GTTAGTGCTGGTGAATTGAAGAAAGAGAATCTAAAAGAGTTGAAGAAGATACTTGAGAAG 480

Query:   377 GATCTTCGTTGGGTTCTAGACGACGACGTTGATGTGGAAGAATTTGATTTGGACAAAGAA 318
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   481 GATCTTCGTTGGGTTCTAGACGACGACGTTGATGTGGAAGAATTTGATTTGGACAAAGAA 540

Query:   317 TTTGATCCTGCGAAACGGTGGCGTAACGAAGGAGAAGCAGTCAGAGTTCTCGTTGACAGG 258
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   541 TTTGATCCTGCGAAACGGTGGCGTAACGAAGGAGAAGCAGTCAGAGTTCTCGTTGACAGG 600

Query:   257 TTTGAACACTCTTTTTGTATTTCAATTTCTGCAAAACTTTGATTCATGAAGAAATTGTTC 198
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   601 TTTGAACACTCTTTTTGTATTTCAATTTCTGCAAAACTTTGATTCATGAAGAAATTGTTC 660

Query:   197 GATTGAATT 189
             |||||||||
Sbjct:   661 GATTGAATT 669


>At3g49870 68416.t05067 ADP-ribosylation factor, putative similar to
           ADP-ribosylation factor-like protein 1 (SP:P40616) [Homo sapiens];
           ARF3 ADP-RIBOSYLATION FACTOR,GP:453191 Arabidopsis thaliana;
           contains domain PF00025: ADP-ribosylation factor family
        Length = 1690

  Minus Strand HSPs:

 Score = 1265 (195.9 bits), Expect = 1.2e-52, P = 1.2e-52
 Identities = 435/607 (71%), Positives = 435/607 (71%), Strand = Minus / Plus

Border_2 (21281_LB1)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAGAGAAATCAATGAGAAGCATTGGAAGTTT
GTGAGAATGATGAATCAATCAGGGCTTCAGTTCACTGAAGATCAGATGCTTAAGATCGTTGATCGATTGGGACGTAAACAGAGCTGGAAACAAGCTTCAG
CTGTTGTTCATTGGGTGTATTCTGATAAAAAGCGTAAACATCTTAGGAGCAGGTAATGTATTCCTGGCGAAAAGATTTCAACTTTCATGGCCATAGAATC
TGTAAAACTTGATTTCTGATTGTATACAAGACTGGTTTCTACAGATTTGTTTACACCAAGCTTTTGTCCGTTCTTGGGTTTGCGAGGAGGCCACAGGAAG
CTCTTCAGATATTCAATCAGATGCTTGTAAGTGGCTTCTGATTTAAGTCAGTTCGTGATATGGTTGATGTAGATGATCGTTGTACTATAGCATCTTGCGT
TTTTTGGATTAACTCTCATTCCTTAGTCACTTTAGGGTGATCGCCAGTTATATCCTGATATGGCGGCGTACCACTGTATTGGT

Start of BLAST Alignment:	NT 637 / Intron 1 of 7
First 15 bp Perfect Match:	NT 662 / Exon 2 of 8

BLAST Details:
Query Sequence: 21281_LB1 
Length: (683 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g67570 68418.t07849 pentatricopeptide (PPR) repeat-con...  2581  2.9e-112  1


>At5g67570 68418.t07849 pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profile PF01535: PPR repeat
        Length = 2523

  Plus Strand HSPs:

 Score = 2581 (393.3 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 529/539 (98%), Positives = 529/539 (98%), Strand = Plus / Plus

Query:   149 GCAATGTGTTATTAAG-TTG--TC-TAGAGAAATCAATGAGAAGCATTGGAAGTTTGTGA 204
             | | ||||| ||| || |||  |  |||||||||||||||||||||||||||||||||||
Sbjct:   665 GAATTGTGTGATTTAGATTGAGTGGTAGAGAAATCAATGAGAAGCATTGGAAGTTTGTGA 724

Query:   205 GAATGATGAATCAATCAGGGCTTCAGTTCACTGAAGATCAGATGCTTAAGATCGTTGATC 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   725 GAATGATGAATCAATCAGGGCTTCAGTTCACTGAAGATCAGATGCTTAAGATCGTTGATC 784

Query:   265 GATTGGGACGTAAACAGAGCTGGAAACAAGCTTCAGCTGTTGTTCATTGGGTGTATTCTG 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   785 GATTGGGACGTAAACAGAGCTGGAAACAAGCTTCAGCTGTTGTTCATTGGGTGTATTCTG 844

Query:   325 ATAAAAAGCGTAAACATCTTAGGAGCAGGTAATGTATTCCTGGCGAAAAGATTTCAACTT 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   845 ATAAAAAGCGTAAACATCTTAGGAGCAGGTAATGTATTCCTGGCGAAAAGATTTCAACTT 904

Query:   385 TCATGGCCATAGAATCTGTAAAACTTGATTTCTGATTGTATACAAGACTGGTTTCTACAG 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   905 TCATGGCCATAGAATCTGTAAAACTTGATTTCTGATTGTATACAAGACTGGTTTCTACAG 964

Query:   445 ATTTGTTTACACCAAGCTTTTGTCCGTTCTTGGGTTTGCGAGGAGGCCACAGGAAGCTCT 504
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   965 ATTTGTTTACACCAAGCTTTTGTCCGTTCTTGGGTTTGCGAGGAGGCCACAGGAAGCTCT 1024

Query:   505 TCAGATATTCAATCAGATGCTTGTAAGTGGCTTCTGATTTAAGTCAGTTCGTGATATGGT 564
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1025 TCAGATATTCAATCAGATGCTTGTAAGTGGCTTCTGATTTAAGTCAGTTCGTGATATGGT 1084

Query:   565 TGATGTAGATGATCGTTGTACTATAGCATCTTGCGTTTTTTGGATTAACTCTCATTCCTT 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1085 TGATGTAGATGATCGTTGTACTATAGCATCTTGCGTTTTTTGGATTAACTCTCATTCCTT 1144

Query:   625 AGTCACTTTAGGGTGATCGCCAGTTATATCCTGATATGGCGGCGTACCACTGTATTGGT 683
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct:  1145 AGTCACTTTAGGGTGATCGCCAGTTATATCCTGATATGGCGGCGTACCACTGTATTGCT 1203