At4g21190 SYNGENTA 21455
Genomic Sequence (from TAIR)
cgtttccagctcagagaatcgatggcgaagaggaaagagatgaagaatacagacgacgggtcaaaattttcaggttaatgggcctatttaactttactag ttaatgggcctatttaactttactagttaatgggccttatccgttacttccataaacgcatttcgtatgttt◄tggat◄gagaatcagacatcagaggga acttggaggacacagagaagcgc►aaat►tatcagacagagtgagaacgaagaagaagaaagcacaggtaagttgaacaatatgtgtttcgattctctag aaaacttacacaattgtaaattgaattcactagatatctctagtggctgaaaaggagaaagctttaagatttctgggttcttcttcttcttcttcttctt cttcttcttctctgaattgatttttttcaggATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACTAAGCTCTTC ACCAAAAAGCCTAACAATGTTGTGgttcgtatttatgtttcttataccttctttaactaaacatttcgacagtctcttggtttcaaaatttcacatgttg tcttcgaattcaataatctttcagGTTTGTGCGGCGAGAGGTCCAAGACCTCGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTA AAGCTGCCAAAATGATTGCTTGTgtaatgctctcttcatatgtttttgtgttctgcaatctcttttagagttagtgagtattgttaatctgcagATAAAA GGATTGTCGAATGTTAAAGAAGAAGTTTATGGAGCGCTTGATTCCTTCATTGCTTGGGAATTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTA TACTTGAAGATGAAAAAGAATGGAAGAAGATTATTCAGgtatgcttgtttattaagcagtaagagctgtgtttctttttttagttagatgaatgtagaat aatgtttatggattttgttagGTGACAAAATGGATGCTGAGTAAAGGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAG ATAATCGCCTTGACGAAGCTGAGGAATTGTGGAACAAATTGTTCATGGAACATTTAGAAGGAACTCCTAGAAAGTTCTTCAACAAAATGATCTCTATATA TTACAAGAGAGATATGCACCAAAAGCTCTTCGAGgtacacttaaaaaatctttcttactaagtatttgcaactggcagagattctatcagagaagttgat gtatgaaactattgagtgttttcttagGTCTTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAATGTTGCGATTGTGTCTATGGTTGGAAAAGTGTTTG TGAAACTAGAGATGAAGGATAAGTACGAGAAACTGATGAAGAAATATCCTCCACCACAGTGGGAGTTTAGATACATCAAAGGAAGACGTGTTAAGGTCAA GGCAAAGCAGCTGAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGACGAAGATAAGATTGACAATGAGATTGAGAGTGAAGAAGAAGATGGTGAG GATCTCAGTGAAGAGGAAGAAGATGAAAAAGAACTTTTGGGTGGAAGTCAAGGACAGATTACTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCAT GAgcttttgagatcgtatctaccgttgaatcatctataaggaaaatagatagacggccaaggttcttcaaagaagctttctggggctgagcttgggtttc tgacgaaaacatgaccagaaaagttttgaactatctgagcttaagagtcaaaacaaggtatagatttgaagagtcaactaaaaagagtattaaactcagc aaaaagattaaatactgtaaaatcttttagtacgactgtgtaagctctgaaaacaaaaattattgtataatttcagacaataatttcagatcaacgttaa ctactttttgttcttttactcttcatctgatcctgactcttcagaactcgattccttgtttactttcttctttgaccctctcttcttatcttcctcgtcc tcactgtattcgctttcgtaatcctcctcttcaatctcatcatcctcttcctctaatccttcttctgcattctcaccctccacatcacgggttcttttca aaacctcgactttcagtgatgtcttttggtcacaaccgatccaagtatcgcttaggcagaagcaagtcaagttataagtaccttctccaggtgctaagag tctccccattaccaatcttgacccacttttaaccttctcaacagcttctttaactgcatcatttgtttccttgacgcttgctcctaaaggttccattgtt tcagtaatagtgtttgatgcagcggctatagctccagcttcatccatgaatttaaccttctgaaagaaccagacatggtttgaatccgcaagaagaaccc aaaagttttcctctttgtggaaaggaaagtaaggtgagtgaggaatagcgcctatgagtccattgggacgtttcagagtgatccaagcttgaactgtcat aatatcgccttcttgaatgccttcttcgccttctgttttgcaagtgacgttgattttaagagaaggtatcatttctaacactttctcgatgtcttgaaca tcggtttctgacaaactcacaacctctctgagcagtttagaacgttctgccaagctcagttcttgaaacttttggaatgatttaacctgcaacgctatcg attt
Border_1 (21455_LB1U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAC
GAAACATACGAAATGCGTTTATGGAAGTAACGGATAAGGCCCATTAACTAGTAAAGTTAAATAGGCCCATTAACTAGTAAAGTTAAATAGGCCCATTAAC
CTGAAAATTTTGACCCGTCGTCTGTATTCTTCATCTCTTTCCTCTTCGCCATCGATTCTCTGAGCTGGAAACGAATTCTCTCTCTCTCAGCTTATAGATA
CCCAAATTAAGGTAATTTTACTCTTCTTCGTGATTCTTCTTCGATTAGGTTTTGGTTTGAATCTCGAATCGATGATTTTCGAACTGATTTGCTCTTGAAA
ATCATGTGGTTCTGCTCCATGTTAAATTGAGATCCGAAATTTTAGAATATTAGAATGACTTGTGAAATGTTAGTATGATACAAAAACCATATCTTTCCTT
CCTTTGCTTC
| Start of BLAST Alignment: | NT < 250 / Upstream |
| First 15 bp Perfect Match: | NT < 255 / Upstream |
BLAST Details: Query Sequence: 21455_LB1U Length: (610 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F7J7 67134 2043 4.2e-86 1 F17F8 50724 227 0.094 1 F24K9 60203 220 0.19 1 F14O13 60605 214 0.34 1 F7J7 67134 Length = 91,387 Plus Strand HSPs: Score = 2043 (312.6 bits), Expect = 4.2e-86, P = 4.2e-86 Identities = 411/414 (99%), Positives = 411/414 (99%), Strand = Plus / Plus Query: 197 ATACGAAACATACGAAATGCGTTTATGGAAGTAACGGATAAGGCCCATTAACTAGTAAAG 256 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47388 ATCCAAAACATACGAAATGCGTTTATGGAAGTAACGGATAAGGCCCATTAACTAGTAAAG 47447 Query: 257 TTAAATAGGCCCATTAACTAGTAAAGTTAAATAGGCCCATTAACCTGAAAATTTTGACCC 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47448 TTAAATAGGCCCATTAACTAGTAAAGTTAAATAGGCCCATTAACCTGAAAATTTTGACCC 47507 Query: 317 GTCGTCTGTATTCTTCATCTCTTTCCTCTTCGCCATCGATTCTCTGAGCTGGAAACGAAT 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47508 GTCGTCTGTATTCTTCATCTCTTTCCTCTTCGCCATCGATTCTCTGAGCTGGAAACGAAT 47567 Query: 377 TCTCTCTCTCTCAGCTTATAGATACCCAAATTAAGGTAATTTTACTCTTCTTCGTGATTC 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47568 TCTCTCTCTCTCAGCTTATAGATACCCAAATTAAGGTAATTTTACTCTTCTTCGTGATTC 47627 Query: 437 TTCTTCGATTAGGTTTTGGTTTGAATCTCGAATCGATGATTTTCGAACTGATTTGCTCTT 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47628 TTCTTCGATTAGGTTTTGGTTTGAATCTCGAATCGATGATTTTCGAACTGATTTGCTCTT 47687 Query: 497 GAAAATCATGTGGTTCTGCTCCATGTTAAATTGAGATCCGAAATTTTAGAATATTAGAAT 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47688 GAAAATCATGTGGTTCTGCTCCATGTTAAATTGAGATCCGAAATTTTAGAATATTAGAAT 47747 Query: 557 GACTTGTGAAATGTTAGTATGATACAAAAACCATATCTTTCCTTCCTTTGCTTC 610 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 47748 GACTTGTGAAATGTTAGTATGATACAAAAACCATATCTTTCCTTCTTTTGCTTC 47801 F17F8 50724 Length = 102,397 Minus Strand HSPs: Score = 227 (40.1 bits), Expect = 0.099, P = 0.094 Identities = 179/310 (57%), Positives = 179/310 (57%), Strand = Minus / Plus
Border_2 (21455_RB1D)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGACAGAGTGAGAACGAAGAAGAAGAAAGCACAGGTAAGTTGAACAATATGTGTTTCGATTCTCTAGAAAACTTACACAATTGTAAATTGAATTCACTA
GATATCTCTAGTGGCTGAAAAGGAGAAAGCTTTAAGATTTCTGGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGAATTGATTTTTTTCAGGA
TGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACTAAGCTCTTCACCAAAAAGCCTAACAATGTTGTGGTTCGTAT
TTATGTTTCTTATACCTTCTTTAACTAAACATTTCGACAGTCTCTTGGTTTCAAAATTTCACATGTTGTCTTCGAATTCAATAATCTTTCAGGTTTGTGC
GGCGAGAGGTCCAAGACCTCGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCTGCCAAAATGATTGCTTGTGTAATGCTC
TCTT
| Start of BLAST Alignment: | NT < 206 / Exon 1 of 6 (Exon in 5’ UTR) |
| First 15 bp Perfect Match: | NT < 202 / Exon 1 of 6 (Exon in 5’ UTR) |
BLAST Details: Query Sequence: 21455_RB1D Length: (704 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g21190 68417.t02878 pentatricopeptide (PPR) repeat-con... 2294 2.6e-99 1 At1g49130 68414.t05039 zinc finger (B-box type) family pr... 212 0.20 1 At3g25660 68416.t02890 glutamyl-tRNA(Gln) amidotransferas... 183 0.999 1 >At4g21190 68417.t02878 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2512 Plus Strand HSPs: Score = 2294 (350.2 bits), Expect = 2.6e-99, P = 2.6e-99 Identities = 474/511 (92%), Positives = 474/511 (92%), Strand = Plus / Plus Query: 194 AAACTATCAGACAGAGTGAGAACGAAGAAGAAGAAAGCACAGGTAAGTTGAACAATATGT 253 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41 AAATTATCAGACAGAGTGAGAACGAAGAAGAAGAAAGCACAGGTAAGTTGAACAATATGT 100 Query: 254 GTTTCGATTCTCTAGAAAACTTACACAATTGTAAATTGAATTCACTAGATATCTCTAGTG 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101 GTTTCGATTCTCTAGAAAACTTACACAATTGTAAATTGAATTCACTAGATATCTCTAGTG 160 Query: 314 GCTGAAAAGGAGAAAGCTTTAAGATTTCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 373 |||||||||||||||||||||||||||||||| Sbjct: 161 GCTGAAAAGGAGAAAGCTTTAAGATTTCTGGGTTCTTCTTCTTCTTCTTCTTCTTCTTCT 220 Query: 374 NNNNNNNNGAATTGATTTTTTTCAGGATGCTAAGCTTGAGATATTCATTACCTTATCTTC 433 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 TCTTCTCTGAATTGATTTTTTTCAGGATGCTAAGCTTGAGATATTCATTACCTTATCTTC 280 Query: 434 TTCTTCAAACAAGGGAATCATCAACTAAGCTCTTCACCAAAAAGCCTAACAATGTTGTGG 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 281 TTCTTCAAACAAGGGAATCATCAACTAAGCTCTTCACCAAAAAGCCTAACAATGTTGTGG 340 Query: 494 TTCGTATTTATGTTTCTTATACCTTCTTTAACTAAACATTTCGACAGTCTCTTGGTTTCA 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 341 TTCGTATTTATGTTTCTTATACCTTCTTTAACTAAACATTTCGACAGTCTCTTGGTTTCA 400 Query: 554 AAATTTCACATGTTGTCTTCGAATTCAATAATCTTTCAGGTTTGTGCGGCGAGAGGTCCA 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 401 AAATTTCACATGTTGTCTTCGAATTCAATAATCTTTCAGGTTTGTGCGGCGAGAGGTCCA 460 Query: 614 AGACCTCGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCT 673 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 461 AGACCTCGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCT 520 Query: 674 GCCAAAATGATTGCTTGTGTAATGCTCTCTT 704 ||||||||||||||||||||||||||||||| Sbjct: 521 GCCAAAATGATTGCTTGTGTAATGCTCTCTT 551 >At1g49130 68414.t05039 zinc finger (B-box type) family protein contains similarity to zinc finger protein GI:3618318 from [Oryza sativa] Length = 1224 Minus Strand HSPs: Score = 212 (37.9 bits), Expect = 0.23, P = 0.20 Identities = 134/220 (60%), Positives = 134/220 (60%), Strand = Minus / Plus