At1g80260 SYNGENTA 21991
Genomic Sequence (from TAIR)
tggttcatatttaattaaagttacggtttcttcatttgattggtgaagttgcgttgtttgaagaccaaacgagtataccgcttccttcgtcatctctgac attggtggtacttgaaaatgcaactatggtaaaaatttcttagggtgatcataaactattctaaaagcatggggtcatatcatgaatagtactgattata aatccttaaagtgcaaaaatagtcaaggaagaaagtacttttacaaaagggtaattccgggtaaatgcaattgatcggcgacgcattctcctctcacagt ctctctcagtcactggctctcaaattcatactacttggcaagcttgctcgatttccctcgtacagccaaattgtgctatgggaatcaaaattaacagtcg cagaagccagtaataATGGAGTCGTTGCTTCGAGCTGATCAAACCCTAATTCCGGGAGCGATGTGTAGCCGCAGAGTTTGGACACACTCAGAACTGGCTC TTCCCTCAGTGAGCGTAACTGAATTGGATCTGgtaagcccacacaattctctcaatcttttcttttgacttgttcagtttctatgtatcctcaatttctt cgttgaatagGTGAGAGGTCTATTACAAGCTTTGCAAGGTCTGTCTAGTCCCTTCCTTTTCTGGGACCAAACTGGACAAACTTTCCGCGCCAAAAGTCAT ATACGCGTCTCTCATTTGTCTCACTCAAGCCTTCATGTTCTTCTCGCTGGGTTCCTGTATCCCGCTACATGTTTGAAACTCGTTGAGTCTATCGTTGCTG CCATTAATACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTGACTCTGTCTCCGCATGGCTTGAGGCAAgtttcctcaactttcttttcatttt gtttcttttaacatatgttgttttgctttagactaatttacatttggcattggatcagagactcagagATATTGCTTTGAAAGAGGAAGTGATGATCGAC AATTCTGATATTACTGTTACTCCAACCCTCTTGGGATTAACCAgttctttatctaggtgtgtagcctatactcttttttcatatatcaaatgctaaactc tgtgttcatgtttttatttaacggtattcttcttcttttctttccatgtacaagtctttgttcagGTGCTGAATATCTCTTACAAGTTGTACATGGTGCC ATCCCTCATACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTCCATGTTCTTGATTATCTTTACAAGAAGCTTGATGAAGTATGCC TTGTACAAGGTGGTGAGgttgtgaccgtgttcatgactttctgtgtttttctttttaatctttgttggtggttactttcgtaattgaattagcgataaat atttggaccagGTGGAAGGATTTCACATGCTGTTGCAAATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGGGAAC TCTTGATGATCCTTGTGAAGAGgttagtgttacattgatgttcaacgcttttctttctagcaatttctgcttcaatatagagtattttgtattatggcta gcaaattgaaggtttgatctttggtacttcgcagTTGTTTTTTACAGCCAACCAATCGGTCTCCGTTGACGATGCAGAGTTTTGGGAGAAAAGCTATCAG TTGATGAAGGTGCCCAACTCAAAATCAAATGTAACTTCACTAAACGAAAAGAAAGTAATGAGTGGACATGACGCCAACTCATCTTTAGCTTCTGACAAAG ACAAAGAGCAAAATACTCGGGTGTTATGTCCCTTATTCATTAAAGACATCTGTAAGTCTATTGTTTCTGCTGGAAAGTCACTGCAGCTAATGCAGCATAT TCCTTCCACGTCTTCAGAAAATTCTGGAAAGACTCAGTTCCATGGGCGAAATGGTTATGGGAAATCTAGCGTTGGTAGTCTCCTGACTAAAATGAGCAGC TGTAGTAGCACTGCGGACTTATCCTTGTCTGAAGTCTTTTGTTTGACACTCGCCGGCCTTATAGGCCATGGTGATCATGTCTCTAGATATCTGTGGAAAG ATGAGGCGGATGAGTGGGAGATTTCTCCAACTTTAGCATCATATATAAGTGGAGAGCTTGTGAATGACATGGATAATAAAGATCTTCCAGTTCTCACATG CTCAGAGCGAATGTGGTATAAGTTGTTGGTCGGTGCTGTGCAAGAGAAAAGAGCTATGGAGGCCAAATCAGAACTCCAGAGTGCATGCTATGCTACAGGT GTTAAGGATGGAAAT►AGTGGTCTCACTGCCCAAAAGGCGTTGCAGGG◄►GTTATTCTGTAATGAAAACCTTGTTGTTTCAGTATCTAAA◄ATGGATCTT GAGAGGAATAGAAATGCTTGGAATGTCTTGAACTTGTCGCAAAACTATTGTCTACCCTCTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGAAT CTGGCATGGCAGATGCTGGACTGAGTGGAACAAACTACAAATTTGGATTCCAATTTGGTAGATCTGAATATATTTCTTCTCAGGATGACACAAACCTTCT AGAAACATTATTTCCCTTTCCCACTTTGCTTCCGTCATTCCAGgtactttgatactgatgatttatgattattttatggcacttttcttcgattttctct catttgcaatagtttctgtttgcttatcttgaaatctttgtgatcaacaaaaaagccgaagctccatctgtcagaattcttacctttccaaaagaatagt acacttccttcaagagttctcagctggttgctaaagGCAGAGCCAATGGATACTCGACTTCCCGTTGTAATTATGCAGGAATGCTTCACAATTTACATAA GGAGGCAGgtagggtgatgtaatcttcaacattgctgcttgtgcctatggcatgcatactcttgttaccttctgaaagttgtgtatgttttagGTGGACT ACATTGGCAAAGTGATTTTGTCAAAACTAATGAATGACTGGAAATTGATGCACGAACTTGCTGTATTGCGCGCCATTTACTTGCTAGGTTCAGgtgcgtt ttatgtgctcaactgttttggcaatatggttgtatctgaaatcttaataaccccttaaaactttcagGGGACCTGCTGCAGCATTTTCTGACTGTCATTT TCGATAGGCTGGGCAAGGGAGAGTCATCAAATGATGATTTTGAGTTGAACATAATACTTCAGgtaaccaggtttggtgtatttttaagagacactgctct catctttatagttgttatcacttctaaaatgattccgcttgttaattgtttgcttatgtatccgtgttctgttgccgtatatgtgttcatacaccaaact tatttctaaagtgtaatggtcttctacagGAATCAATTAGAAATTCAGCTGATGCCATGCTGTTAAGCAGTCCTGATTCATTGGTGGTATCTATTTCCAG AGAAGACAGAGACAAAGATGATAAGGGTGACATAATACCCCTTTCTTCAACTCGTAAAAGCCGCGTTAACAGCTTTGGAATAGATTGTCTCGAGTCTCTC AAATTCACATACAAGgtctagagaaacaacttagtcttccatccaatccgtactggtatatctcataggccacatctatgtgtatttgaagagctgaact gttttcttttttaagGTGCCATGGCCACTTGAGCTTATTGCCAATAGTGAGGCCATTAAGAAGTATAACCAGgtaaccctttctcatccagctatttttg tggtaaacagtttgttgttcctctatgtggtaattatttaattgaaaacaggtgatgggatttttgttgaagGTCAAGCGAGCAAAATATGTGCTTGATA AAGCACGAAGGTGGATGTGGAAGgtctttgatatctctcaaactcatttctttcttcttagactgtatcccgtgacttccaaatccagtttgaaagagcc taatcagtcttttgatctatacatataaatataaagggaatcataagaatgtggttcagtttgataaacttgatgactttggtgtttgtgtatgatagGG TAAAGGCTCTGCAACAAAAATCCGCAAGCACCACTGGTTACTAGAACAAAAGCTCCTCAACTTTGTGGATGCTTTTCATCAATACGTAATGGACAGGgta ttgtccaatgctaaatgattggttataattacagtatcatttttcgttggagtaatataagtttgtgctagagttgtggcaaaatcgaaagctgatcaca tggcttgagtaagatgaaaagcttgccatgcttaactgtattttgtaagcagGTATATCACACTGCGTGGCGTGAACTGTGTGAAGCGATGGTAAAAGCA GGGTCTCTGGATGAGGTCATATATGTACATGAAACCTACTTGTTATCGATTCAGCGGCAATGCTTTGTGGTTCAAGAAAAGCTGgtaatggaccatgaag gcattaagcgacctcttaaaatgcatagtatatatttgaagttgtaggcttctaaaaacctagtgtttggtggtttttgtatagTGGGCAATCATCGCAA GTCGGATCAACATGATTCTCGGTTTAGCTCTAGAATTCTACTCAATACAACAGACACTGAGCAGCGGTGGAGCAGTTTCAGCCATCAAGGCTAGATGCGA AATGGAAATAGACCGTATAGAGAAACAATTTGAGGACTGTATTGCTTTCCTTCTCAGAgtaagtaaatcgaaaactgtgtacttgttgtattgtgaagct atatataattgattaatgcttaatgggggatggaacttgcagGTATTATCTTCGAAGCTGAATGTGGGACACTTCCCTCATTTGGCTGATTTGGTGACCA GAATCAATTACAATTATCACTACATGTCAGATACTGGAAGCTTGATGACTACTTCTGGAGCAGAGACCAACTCATCCAGACCTTGGACTGCCAAATCTGA TGTATGAatggaccgggaaattatcgcaatgttggattgtcgcaacactatcacacgtaattgttcaagcctcatgcttttcttgtgtctggtatctaat ttcctgattatgtattttctgtttataaaagttcactgttttgaattagacattgtacaaaactgctatcaaggtttaaaaaaaaaaaaacattgttaac attcttaacaagaaatcatcaaagtttaaaatctaatcgtgaccctactatgcatagtacatatattaagcattaaccaatacgacaaaagaaaaaaaaa agcattaaccaaaaacaaaaagacgataattaaggttataggttatgagtttattacgaaaagcccatttatggatgcaattaagcaaaccttgttggag gacaaaatggtcaaaagaaagaaaacgtaaaaccctaaaacatttctttaacactcgacttgtctcataaaccctttgtgtttgtagtctctctactctc taga
Border_1 (21991_LB1D)
ATGGTGCAGACCGCCGGCATGTCCGCCTCGGTGGCACGGCGGATGTCGGCCGGGCGTCGTTCTGGGCTCATGGATCCACGTGTGGAAGATATGAATTTTT
TTGAGAAACTAGATAAGATTAATGAATATCGGTGTTTTGGTTTTTTCTTGTGGCCGTCTTTGTTTATATTGAGATTTTTCAAATCAGTGCGCAAGACGTG
ACGTAAGTATCCGAGTCAGTTTTTATTTTTCTACTAATTTGGTCGTTTATTTCGGCGTGTAGGACATGGCAACCGGGCCTGAATTTCGCGGGTATTCTGT
TTCTATTCCAACTTTTTCTTGATCCGCAGCCATTAACGACTTTTGAATAGATACGCTGACACGCCAAGCCTCGCTAGTCAAAAGTGTACCAAACAACGCT
TTACAGCAAGAACGGAATGCGCGTGACGCTCGCGGTGACGCCATTTCGCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATT
ACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACAC:CAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAA
TGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCCTGCAACGCCTTTTGGGCAGTGAGACCACTATTTCCATCCTTAACACCTG
TAGCATAGCATGCACTCTGGAGTTC:TGATTTGGCCTCCATAGCTCTTTTCTCTTGCACAGCACCGACCAACAACTTATACCACATTCGCTCTGAGCATG
TGAGAACTGGAAGATCTTTATTATCCATGTCATTCACAAGCTCTCCACTTATATATGATGCTAAAGTTGGAGAAATCTCCCACTCATCCGCCTCATCTTT
CCACAGATATCTAGAGACATGATCACCATGGCCTATAAGGCCGGCGAGTGTCAAACAAAAGACTTCAGACAAGGATAAGTCCGCAGTGCTACTACAGCTG
CTCATTTA
| Start of BLAST Alignment: | NT 1972 / Exon 6 of 16 |
| First 15 bp Perfect Match: | NT 1932 / Exon 6 of 16 |
BLAST Details: Query Sequence: 21991_LB1D Length: (1006 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80260 68414.t08573 tubulin family protein 1820 8.6e-77 1 At1g20570 68414.t02295 tubulin family protein 686 3.1e-25 1 At4g26910 68417.t03598 2-oxoacid dehydrogenase family pro... 193 0.991 1 >At1g80260 68414.t08573 tubulin family protein Length = 4758 Minus Strand HSPs: Score = 1820 (279.1 bits), Expect = 8.6e-77, P = 8.6e-77 Identities = 382/400 (95%), Positives = 382/400 (95%), Strand = Minus / Plus Query: 1005 AAATGAGCAGCTGTAGTAGCACTGCGGACTTATCCTTGTCTGAAGTCTTTTGTTTGACAC 946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1575 AAATGAGCAGCTGTAGTAGCACTGCGGACTTATCCTTGTCTGAAGTCTTTTGTTTGACAC 1634 Query: 945 TCGCCGGCCTTATAGGCCATGGTGATCATGTCTCTAGATATCTGTGGAAAGATGAGGCGG 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1635 TCGCCGGCCTTATAGGCCATGGTGATCATGTCTCTAGATATCTGTGGAAAGATGAGGCGG 1694 Query: 885 ATGAGTGGGAGATTTCTCCAACTTTAGCATCATATATAAGTGGAGAGCTTGTGAATGACA 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1695 ATGAGTGGGAGATTTCTCCAACTTTAGCATCATATATAAGTGGAGAGCTTGTGAATGACA 1754 Query: 825 TGGATAATAAAGATCTTCCAGTTCTCACATGCTCAGAGCGAATGTGGTATAAGTTGTTGG 766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1755 TGGATAATAAAGATCTTCCAGTTCTCACATGCTCAGAGCGAATGTGGTATAAGTTGTTGG 1814 Query: 765 TCGGTGCTGTGCAAGAGAAAAGAGCTATGGAGGCCAAATCAGAACTCCAGAGTGCATGCT 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1815 TCGGTGCTGTGCAAGAGAAAAGAGCTATGGAGGCCAAATCAGAACTCCAGAGTGCATGCT 1874 Query: 705 ATGCTACAGGTGTTAAGGATGGAAATAGTGGTCTCACTGCCCAAAAGGCGTTGCAGGGAT 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1875 ATGCTACAGGTGTTAAGGATGGAAATAGTGGTCTCACTGCCCAAAAGGCGTTGCAGGGGT 1934 Query: 645 ATATTGTGGTGTAAACAAATTGACGCTT-AGACAACTTAA 607 |||| || | || | ||| | || || | || || Sbjct: 1935 -TATTCTGTAATGAAAACCTTGTTGTTTCAGT-ATCTAAA 1972 >At1g20570 68414.t02295 tubulin family protein Length = 4542 Minus Strand HSPs: Score = 686 (109.0 bits), Expect = 3.1e-25, P = 3.1e-25 Identities = 188/241 (78%), Positives = 188/241 (78%), Strand = Minus / Plus
Border_2 (21991_LB2U)
TAGATACGCTGACACGCCAAGCCTCGCTAGTCAAAAGTGTACCAAACAACGCTTTACAGCAAGAACGGAATGCGCGTGACGCTCGCGGTGACGCCATTTC
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCCGCAATGTGTTATTC
TGTAATGAAAACCTTGTTGTTTCAGTATCTAAAATGGATCTTGAGAGGAATAGAAATGCTTGGAATGTCTTGAACTTGTCGCAAAACTATTGTCTACCCT
CTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGAATCTGGCATGGCAGATGCTGGACTGAGTGGAACAAACTACAAATTTGGATTCCAATTTGG
TAGATCTGAATATATTTCTTCTCAGGATGACACAAACCTTCTAGAAACATTATTTCCCTTTCCCACTTTGCTTCCGTCATTCCAGGTACTTTGATACTGA
TGATTTATGATTATTTTATGGCACTTTTCTTCGATTTTCTCTCATTTGCAATAGTTTCTGTTTGCTTATCTTGAAATCTTTGTGATCAACAAAAAAGCCG
AAGCTCCATCTGTCAGAATTCTTACCTTTCCAA
| Start of BLAST Alignment: | NT 1900 / Exon 6 of 16 |
| First 15 bp Perfect Match: | NT 1932 / Exon 6 of 16 |
BLAST Details: Query Sequence: 21991_LB2U Length: (733 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80260 68414.t08573 tubulin family protein 2203 2.5e-94 1 At1g20570 68414.t02295 tubulin family protein 1220 1.7e-49 1 At3g17970 68416.t02035 chloroplast outer membrane translo... 198 0.81 1 At2g41420 68415.t04696 proline-rich family protein contai... 194 0.89 1 >At1g80260 68414.t08573 tubulin family protein Length = 4758 Plus Strand HSPs: Score = 2203 (336.6 bits), Expect = 2.5e-94, P = 2.5e-94 Identities = 457/473 (96%), Positives = 457/473 (96%), Strand = Plus / Plus Query: 263 AGTTGTCTAAGCGTCAATTTGTCC--GCAATGTGTTATTCTGTAATGAAAACCTTGTTGT 320 ||| |||| | | | | | | ||| | ||||||||||||||||||||||||||| Sbjct: 1901 AGTGGTCTCACTGCCCAAAAGGCGTTGCAGGG-GTTATTCTGTAATGAAAACCTTGTTGT 1959 Query: 321 TTCAGTATCTAAAATGGATCTTGAGAGGAATAGAAATGCTTGGAATGTCTTGAACTTGTC 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 TTCAGTATCTAAAATGGATCTTGAGAGGAATAGAAATGCTTGGAATGTCTTGAACTTGTC 2019 Query: 381 GCAAAACTATTGTCTACCCTCTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 GCAAAACTATTGTCTACCCTCTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGA 2079 Query: 441 ATCTGGCATGGCAGATGCTGGACTGAGTGGAACAAACTACAAATTTGGATTCCAATTTGG 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2080 ATCTGGCATGGCAGATGCTGGACTGAGTGGAACAAACTACAAATTTGGATTCCAATTTGG 2139 Query: 501 TAGATCTGAATATATTTCTTCTCAGGATGACACAAACCTTCTAGAAACATTATTTCCCTT 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2140 TAGATCTGAATATATTTCTTCTCAGGATGACACAAACCTTCTAGAAACATTATTTCCCTT 2199 Query: 561 TCCCACTTTGCTTCCGTCATTCCAGGTACTTTGATACTGATGATTTATGATTATTTTATG 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2200 TCCCACTTTGCTTCCGTCATTCCAGGTACTTTGATACTGATGATTTATGATTATTTTATG 2259 Query: 621 GCACTTTTCTTCGATTTTCTCTCATTTGCAATAGTTTCTGTTTGCTTATCTTGAAATCTT 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2260 GCACTTTTCTTCGATTTTCTCTCATTTGCAATAGTTTCTGTTTGCTTATCTTGAAATCTT 2319 Query: 681 TGTGATCAACAAAAAAGCCGAAGCTCCATCTGTCAGAATTCTTACCTTTCCAA 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2320 TGTGATCAACAAAAAAGCCGAAGCTCCATCTGTCAGAATTCTTACCTTTCCAA 2372 >At1g20570 68414.t02295 tubulin family protein Length = 4542 Plus Strand HSPs: Score = 1220 (189.1 bits), Expect = 1.7e-49, P = 1.7e-49 Identities = 332/421 (78%), Positives = 332/421 (78%), Strand = Plus / Plus