At5g49930 SYNGENTA 22423
Genomic Sequence (from TAIR)
tcaccataaattgcagcttactctatcaatttgattcttgaataggagttgaatattttagttactttatttttgctgcatagattttattgttcataaa taatacatacaactgttatatgtggattatttatcaattatcaatattcaaactgagacaaattaaaaacttctctaattagtgtattagactaaccggt tttaaaaaagcatgtaattttgattggtttagataactaatgatcgtcttttatattgggcttataggcccttctagtcggcccaacacacatgaatagc tcacaaatttctcttctccttcttcctcttttctcacagcttagcacagaccgaattttaatttctaactttgacaaacagattaaaacctttcttcgat tcgacactgaatcacgaaatttcgagagagactaagatATGGTGAAGGTACGAATGAACACGGCGGACGTCGCCGCCGAAGTCAAGTGCTTGAAGCGATT AATCGGTATGAGATGCTCCAACGTCTATGATATATCTCCCAAGgtaacaaatttctacaatgaaaagcttcaaatcccctgattcatttgattcgatttc cattagggtttatgttttgattttgctccaatttcttctacagACGTATATGTTCAAGCTCTTGAATAGTAGCGGTATCACAGAATCTGGTGAAAGTGAG AAAGTTTTGCTTTTAATGGAAAGTGGTGTTCGTTTACATACCACAGCTTATGTCAGgtaaaaacccatctctagattttgagcttttgttttggggaagt agtaaagtaatgatttttttttctctcacaaatttgtgtagGGATAAGAGTAATACTCCATCTGGGTTTACTTTGAAGTTGAGGAAACATATCAGGACTA GGAGGCTTGAGGATGTTCGACAGCTTGGTTATGATAGGgtatggaacttggagttttctattgtgttttgtttggttgccatttattgcgttttttggtt ttaacttttgttgtttgtaccagATTATTGTCTTCCAGTTTGGGCTAGGTGCTAATGCTCACTATGTTATATTGGAGCTGTATGCTCAAGGAAACATAAT TCTTACTGATTCTGAGTATATGATCATGACACTCCTCCGCTCTCATAGgtttgtttttgttactctacttttatcagatcgtttgtttttgctatgtttg aactgctcaaagtgcttttgttcgtgtggctttttatactgaatgattgatttttatttctgtagAGATGACAATAAGGGTTTTGCTATTATGTCTCGTC ACCGTTACCCGATAGAGATATGTCGAGTCTTTGAGAGAACAACTGTTTCAAAGCTTCAGGAATCACTTACTGCTTTCGTGCTTAAGGATCATGACGCAAA ACAGATTGAACCGAAGGAGCAGAATGGTGGCAAAAAGGGTGGGAAGTCAAATGATTCTACGGGTGCCAAACAATATACATTGAAGAATATTCTTGGTGAC GCTTTAGGCTATGGGCCACAGCTCTCAGAGCACATTATTCTGGATGCTGGTCTAGTTCCAACTACCAAACTTTCAGAAGACAAGAAATTAGATGATAATG AGATTCAGTTATTGGTTCAAGCGGTGATCGTTTTTGAAGATTGGCTTGAAGATATTATAAATGGTCAAAAAGTTCCTGAAGGTTATATTCTAATGCAAAA ACAAATTTTGGCAAATGACACGACTTCTGAATCAGGAGGTGTTAAAAAGgtcactattttactctatgcttcttcatttttgtattgtttaatggcaatg gattttatgtattgaattttcgtttgcctggttgcctacagATGTATGATGAGTTCTGTTCAATCTTACTAAATCAATTCAAATCAAGAGTGTATGAAAA GTTTGAAACTTTCGATGCGGCTTTAGATGAGTTCTACAGCAAAATTGAGAGCCAAAGGTCTGAACAACAACAAAAGGCAAAAGAAGATTCTGCCAGTCTG AAACTCAATAAGATTCGCCAAGATCAGgtttgtagtatttattaatgtactggtttggaacttccatttccatatatctctgtaaaacttttctttaaac ttatcttaattgcaatgtttctatacttgtgttttagGAGAACCGTGTTCAAATTCTGAAGAAAGAAGTCAACCATTGTGTTAATATGGCGGAATTAATC GAGTACAACTTAGAAGATGTAGATGCTGCCATATTAGCTGTTCGTGTAGCACTTGCAAAGGGTATGGGCTGGGATGATCTAGCTCGCATGGTCAAGGAAG AAAAAAAATTAGGAAATCCTGTTGCTGGAGTCATTGACAGACTTTATCTGGAGAAGAATTGCATGACCTTGTTGTTGTGCAACAATCTCGATGAAATGGA TGATGATGAGAAGACGGTTCCAGTGGAAAAGgtgttgatctctcctcactttgattgaatatacaaagctcatcttctttcttgttctgacatatggagc acgatgtggttttgtagGTGGAGGTTGACTTATCACTTTCTGCGCATGGTAATGCTAGGCGCTGGTATGAAATGAAGAAGAAGCAAGAAACCAAACAGGA GAAGACTGTTTCTGCCCATGAAAAGGCTTTTAGAGCAGCTGAGAAAAAGACCCGCCACCAACTTTCTCAGgtaagcttccaacctcgtcgctgttaatct tgtttaatgtttcttcctcgcagtcaactaatcatttgcatttttctggctgaaagGAAAAAGTGGTTGCAACGATTTCACACATGAGAAAAGTCCACTG GTTTGAGAAATTTAATTGGTTCATTAGCAGTGAAAACTACTTGGTCATCAGTGGT◄CGTGATGCTCAGCAAAATGAGATGATAGTTAAACGTTACATGTC AAAAGGAGATCTgtaagttttaat►atatagaactatttatctagtctttgtgttagtattaaatattcaaagatgatgataagtttttaaccatgcttt cttagGTATGTACACGCAGAGCTTCATGGAGCATCTAGTACTGTGATAAAGAATCATAAACCTGAACAAAATGTACCGCCTCTCACTTTAAACCAAGCTG GATGTTTTACGgtaagcaatttcatctactattttggttgtttgaattatgtgaatatggtgcaatgtcttgatggcagacttttggatataatatgatg cagGTTTGTCATAGTCAGGCCTGGGATTCCAAGATTGTTACTAGTGCATGGTGGGTTTATCCTCATCAGGTCACTAAAACAGCTCCTACTGGGGAATACC TTACAGTTGGAAGTTTCATGATACGAGGTAAGAAAAACTTTCTTCCACCACACCCACTCATCATGGGTTTTGGATTATTGTTTCGTTTGGACGAGAGCTC CTTGGGAGCTCATTTGAATGAGAGAAGGGTAAGAGGGGAAGAGGAAGGAATGAATGATGTAGTCATGGAAACACATGCTCCTGATGAGCATTCAGATACT GAGTCAGAGAACGAAGCAGTGAATGAAGTGGTTTCTGCCTCAGGAGAAGTTGATTTGCAGGAATCAAGTACGGCATTGAGCCAAGATACTTCTTCTTTAG ACATGAGTTCATCTGGTATTACTGAAGAAAATGTTGCATCAGCCACCTCACAGCTTGAAGATCTTCTTGATAGAACCCTTGGTCTTGGTGCTGCAACGGT GGCAGGCAAGAAAGATACAATAGAGACATCAAAAGATGATATGGAAGAGAAGATGAAACAGGAAGAGAAGAATGCAGTAGTGAGAGATAAGCCTTATATG TCAAAAGCTGAAAGAAGAAAGCTTAAGATGGGCCAAAGCGGCAACACAGCTGCTGATGGTAACACTGGGCAAGAAAAGCAGCAACGAAAGGAAAAAGACG TTTCTTCTTTAAGCCAAGCTACCAAGAGCATACCTGATAACAAGCCAGCTGGGGAAAAAGTTAGCCGTGGGCAAAGGGGTAAACTTAAGAAAATGAAGGA GAAGTATGCTGATCAAGATGAAGACGAAAGAAAAATACGGATGGCATTGTTGGCAgtaagtacttcccttggattctccattttttgtcatagaccatca ttgttctcttatcagtacttcataactggtaaattaatttgtctcccctttgcagTCGTCTGGAAAGCCACAGAAGACTGATGTTGAATCACAGAATGCA AAAACCGCGGTCACTGAAGTGAAGAAACCTTCTGAAGgtaaaaaatttcaattttgtcttttttcttctgaaattgtttccgggcatacactttccatta gactggaaccatatgatactgatagttgctttgggttgctgtgcagAGACAGACGATGCTGTGAAAATATGTTACAGGTGTAAGAAGGTTGGACATCTTG CTAGGGATTGTCATGGGAAAGAAACTTCAGACATGGACAAAGTGGTGATGGAAGAAGACGATATTCATGAAGTTGGGGACGAAGAGAAAGAAAAACTGAT TGATGTCGATTACCTTACTGGTAACCCGTTACCAACCGACATCCTTTTATATGCGGTCCCCGTGTGCGGCCCCTACAATGCTCTCCAGTCATATAAATAC AGAGTCAAAGCGATTCCAGGCAGCATGAAGAAAGGAAAAGgtaacaacacattctcttccaagtagttgtaaatgtagagcttttggactgtattgatgt tgacttttgtgtttggacagCTGCAAAAACTGCAATGAATCTGTTCACACATATGTCGGAGGCGTCAGTAAGGGAGAAAGAGTTGATGAAAGCTTGTACG GATCCGGAGCTGATGGCTGCTCTTGTCGGGAATGTGAAGATCACAGCAGCAGGTTTGACGCAGTTGAAGCAGAAACAGAAGAAGGGCAAGAAAAGCGGGA AACAACAACATAGCTAGgttttaggtaactgctgcgttgcagcgaagaaggcttttacaaacatatagcagattggttcatatctttgtatgttcactct tgcaaaaacgaaacatcatgttacagcccaaatattatcagaatcaaagtgatttgaaaatttagtaaattttggctaaagagagctctagttatgaact aatacatttcattatcagtaaaatccataaatagctgaaaacaatctcaaaataagcttttaaatcctacggcatggattcttctactcctgtttttttt gcttttaaaaccttttctgcttcattttttcttgttttgtagagaactcagaaataatttgcgaattacaatttgatcaaacctctcttcttctcctctt tcttcttccttcttcatcaaaactattacatttctacattatctcaaacatctccaaatcattatcttacacgaagaaggaagagataagagcatcaatt tt
Border_1 (22423_RBU)
GMCAMGCCNGCKCGAAWTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATC
AGTGTTTGAACCACTGATGACCAAGTAGTTTTCACTGCTAATGAACCAATTAAATTTCTCAAACCAGTGGACTTTTCTCATGTGTGAAATCGTTGCANNC
NCTTTTTCCTTTNAGCCANAAAAATGCAAATGATTAGNTGACTGCGAGGAACAAACATTAAACAAGATTAACAGCGACGAGGTTGGAANCTTACCTGAGA
AAGTTGGTGGCGGNTCTTTTTNTCAGCTGNTNTAAANGCCTTNNNATGGGCAGAAACAGTCTTCTCCTGNTTGGTTTCTTGCTTCTTCTTCATTNCATAC
CAGCNCCTAGCATTACCATGCGCAGAAAGNGATNAGTCANCCTCCACCTACAAAACCACNTTNTGCTNCATATGANAAAACAAGAANGANGATGATCTTT
GNATATTCAAACAAAGNGAGGAGNGATCAACACCTTTTCCTGGACCG
| Start of BLAST Alignment: | NT 2417 / Exon 9 of 14 |
| First 15 bp Perfect Match: | NT 2417 / Exon 9 of 14 |
BLAST Details: Query Sequence: 22423_RBU Length: (547 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g49930 68418.t05743 zinc knuckle (CCHC-type) family pr... 1896 3.0e-80 1 >At5g49930 68418.t05743 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle Length = 4774 Minus Strand HSPs: Score = 1896 (290.5 bits), Expect = 3.0e-80, P = 3.0e-80 Identities = 402/441 (91%), Positives = 402/441 (91%), Strand = Minus / Plus Query: 547 CGGT-CCAG-G-AAAAGGTGTTGATCNCTCCTCNCTTTGTTTGAATATNCAAAGATCATC 491 |||| |||| | |||||||||||||| |||||| ||||| |||||||| ||||| ||||| Sbjct: 2049 CGGTTCCAGTGGAAAAGGTGTTGATCTCTCCTCACTTTGATTGAATATACAAAGCTCATC 2108 Query: 490 NTCNTTCTTGTTTTNTCATATGNAGCANAANGTGGTTTTGTAGGTGGAGGNTGACTNATC 431 || |||||||| | |||||| |||| | ||||||||||||||||||| ||||| ||| Sbjct: 2109 TTCTTTCTTGTTCTGACATATGGAGCACGATGTGGTTTTGTAGGTGGAGGTTGACTTATC 2168 Query: 430 NCTTTCTGCGCATGGTAATGCTAGGNGCTGGTATGNAATGAAGAAGAAGCAAGAAACCAA 371 |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 2169 ACTTTCTGCGCATGGTAATGCTAGGCGCTGGTATGAAATGAAGAAGAAGCAAGAAACCAA 2228 Query: 370 NCAGGAGAAGACTGTTTCTGCCCATNNNAAGGCNTTTANANCAGCTGANAAAAAGANCCG 311 |||||||||||||||||||||||| ||||| |||| | ||||||| ||||||| ||| Sbjct: 2229 ACAGGAGAAGACTGTTTCTGCCCATGAAAAGGCTTTTAGAGCAGCTGAGAAAAAGACCCG 2288 Query: 310 CCACCAACTTTCTCAGGTAAGNTTCCAACCTCGTCGCTGTTAATCTTGTTTAATGTTTGT 251 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct: 2289 CCACCAACTTTCTCAGGTAAGCTTCCAACCTCGTCGCTGTTAATCTTGTTTAATGTTTCT 2348 Query: 250 TCCTCGCAGTCANCTAATCATTTGCATTTTTNTGGCTNAAAGGAAAAAGNGNNTGCAACG 191 |||||||||||| |||||||||||||||||| ||||| ||||||||||| | ||||||| Sbjct: 2349 TCCTCGCAGTCAACTAATCATTTGCATTTTTCTGGCTGAAAGGAAAAAGTGGTTGCAACG 2408 Query: 190 ATTTCACACATGAGAAAAGTCCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAA 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2409 ATTTCACACATGAGAAAAGTCCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAA 2468 Query: 130 AACTACTTGGTCATCAGTGGT 110 ||||||||||||||||||||| Sbjct: 2469 AACTACTTGGTCATCAGTGGT 2489
Border_2 (22423_LBD)
TTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAGAACTATTTATC
TAGTCTTTGTGTTAGTATTAAATATTCAAAGATGATGATAAGTTTTTAACCATGCTTTCTTAGGTATGTACACGCAGAGCTTCATGGAGCATCTAGTACT
GTGATAAAGAATCATAAACCTGAACAAAATGTACCGCCTCTCACTTTAAACCAAGCTGGATGTTTTACGGTAAGCAATTTCATCTACTATTTTGGTTGTT
TGAATTATGTGAATATGGTGCAATGTCTTGATGGCAGACTTTTGGATATAATATGATGCAGGTTTGTCATAGTCAGGCCTGGGATTCCAAGATTGTTACT
AGTGCATGGTGGGTTTATCCTCATCAGGTCACTAAAACAGCTCCTACTGGGGAATACCTTACAGTTGGAAGTTTCATGATCGAGGTAAGAAAAACTTCTT
CACCACACCCACTCATCATGGGTTTGGATTATTGTTCGTTGGACGAGAGCTCTTGGGAGCTCATTTGATGAGAGAGGTAGAAGGGAAGAGGAAGGATGAA
TGATGTATCATGGAACACATGCTCTGATGAGCATTCAAAACTGAGCAGAGACGAACAGKGAN
| Start of BLAST Alignment: | NT 2485 / Intron 9 of 13 |
| First 15 bp Perfect Match: | NT 2485 / Intron 9 of 13 |
BLAST Details: Query Sequence: 22423_LBD Length: (662 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g49930 68418.t05743 zinc knuckle (CCHC-type) family pr... 2421 2.2e-104 1 >At5g49930 68418.t05743 zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle Length = 4774 Plus Strand HSPs: Score = 2421 (369.3 bits), Expect = 2.2e-104, P = 2.2e-104 Identities = 509/528 (96%), Positives = 509/528 (96%), Strand = Plus / Plus Query: 84 ATATAGAACTATTTATCTAGTCTTTGTGTTAGTATTAAATATTCAAAGATGATGATAAGT 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2558 ATATAGAACTATTTATCTAGTCTTTGTGTTAGTATTAAATATTCAAAGATGATGATAAGT 2617 Query: 144 TTTTAACCATGCTTTCTTAGGTATGTACACGCAGAGCTTCATGGAGCATCTAGTACTGTG 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2618 TTTTAACCATGCTTTCTTAGGTATGTACACGCAGAGCTTCATGGAGCATCTAGTACTGTG 2677 Query: 204 ATAAAGAATCATAAACCTGAACAAAATGTACCGCCTCTCACTTTAAACCAAGCTGGATGT 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2678 ATAAAGAATCATAAACCTGAACAAAATGTACCGCCTCTCACTTTAAACCAAGCTGGATGT 2737 Query: 264 TTTACGGTAAGCAATTTCATCTACTATTTTGGTTGTTTGAATTATGTGAATATGGTGCAA 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2738 TTTACGGTAAGCAATTTCATCTACTATTTTGGTTGTTTGAATTATGTGAATATGGTGCAA 2797 Query: 324 TGTCTTGATGGCAGACTTTTGGATATAATATGATGCAGGTTTGTCATAGTCAGGCCTGGG 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2798 TGTCTTGATGGCAGACTTTTGGATATAATATGATGCAGGTTTGTCATAGTCAGGCCTGGG 2857 Query: 384 ATTCCAAGATTGTTACTAGTGCATGGTGGGTTTATCCTCATCAGGTCACTAAAACAGCTC 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2858 ATTCCAAGATTGTTACTAGTGCATGGTGGGTTTATCCTCATCAGGTCACTAAAACAGCTC 2917 Query: 444 CTACTGGGGAATACCTTACAGTTGGAAGTTTCATGAT-CGAGGTAAGAAAAACTT-CTTC 501 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 2918 CTACTGGGGAATACCTTACAGTTGGAAGTTTCATGATACGAGGTAAGAAAAACTTTCTTC 2977 Query: 502 -ACCACACCCACTCATCATGGGTTT-GGATTATTGTT-CGTT-GGACGAGAGCTC-TTGG 556 |||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||| Sbjct: 2978 CACCACACCCACTCATCATGGGTTTTGGATTATTGTTTCGTTTGGACGAGAGCTCCTTGG 3037 Query: 557 GAGCTCATTTGA-TGAGAGAGGTAGAAGGGAAGAGGAAGGATGAATGA 603 |||||||||||| ||||||| | ||| | || || | | |||||| Sbjct: 3038 GAGCTCATTTGAATGAGAGAAGGGTAAGAGGGGAAGAGGAAGGAATGA 3085