At2g31530 SYNGENTA 24018
Genomic Sequence (from TAIR)
TCTCAGCGCCGCGTTTTTTCTCTCCTCATCCTCTCGATGAATTCCTCTCAAGCTTGCTTCTTCCATttttctcttagaccaatctcgctttcgcatccct cctatgccttcctctcgaaacgtaagttttccttccccaaattaagtgcttgggaatcgaaattttaagagattgttgttacctagactagttcaggata caatcgttagagtttcgttgcttcgaattgattaaaccctaatttcaaaagcacagacctgggtttttcactgttcctgcaaagttgataactttttcac tgatactatctcttagactagttctcttaacccggaaattctctcaaagtatccaactttatgaacagaaacaattgttgaggcATGTGTTTTGACCTTG ATAATGTTTTTGCAGGAGACCCATTTCTGTGTTCTCAACCCAGAAAATGCCTTACTACGAATTTGAATATGTCAAGAACGAGACAAGGGCATTCTATACA AATGAACAGAAGACATCTTCTTATGAAAGAAAGGAAGAGTTTTTCGATAAATTATTCCGATAAGTTCAGAGATGATTCTATGAGTAGCGAGGAGATGCAT ACAGATGCTTTGGATGTGGAGATTATTCCGCCAGATTCACAGGACATTCGTAATTCACAGAACTCTGCTGTCTCCAACACACTACAGGATGATAGGCCAA AGTCTTTTAGAAATAGGTTTCTTGATTTTGTTCGGATAAGTTCAGTACTCAATACTGCAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGAGGTTGTT TGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTACCTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTC TCGGGTTCTGTTGGTGAGTGTTCTCATgtcatttgagtcttatagtcccttgt◄ttggttgacatttctatgtatttgtagttaac►atttta►tgtttt tgatagaggaactgggtgagTTTGGAGCAGAGATCAAGCTTTCGCTCTTCCAGCTTGGGCTCAGTCCACAAATAATAGCATCCATAATTATGCAGgttaa gatctctcctcgatttgatgtgtttgcctgagtctgtgcgttctttatatattaagattatgattgatgataaagtgctcatgaaacaccagGTGCTTTG TCACGTTCTTCCATCCTTGGTGAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTgtttagtttcttacctctcaagcc gtgagatgaattcttaacatacaattactttgtttgtcttgtgacttttttgcttcattaaacaaagttactaaatcgcctttttggtcttattttatta gATGGTGGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAATATTCAGTTTTTGCAGCCACTGCCCAgtaagttaa ttaggattcttcacgttcggggtatcaaaatggtgcttttaaattctatcatccattttgccacaactgatgctaaagtaataatgcatgcttattcagg gtcaagCATGTGATGATGACATCATCTCTGCTAGTCTGTGGTGCAATGACAATGACGTGGCTCTGTGATACAATATCAGAATCTGGATTTGgtatttgat tctctatatctctatctctataaccattggtagcttaaagtgatgctgatatggagtaattggtggagcttgctcataacctgtttctaagccttttaca gGTCATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACAAGATGCTCAATCAAATCTCAGgtacctttggttttt cttactccacatttctcaaacttatggttagtctttacattagacctgcatgtcttccacatttcctggaggcaactatcattcgcctatcttctcaatt gatttataaaaaaaggaagcgttcttctcttttgcagGAAGTTTCTCGAACTGGTTGCCTTACTTGTTAGGCTTGCTGGGCATTTTTACCGTAGTAACTA TGTTCGCTGTTGTTGTTACTGAGGGCTGCAGGAAGATTAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGgtgatatatgtagctcagcat cattattttatcgaaaagattgttgtataattgccacttttaccaatatagctaggagtagattacggttaaagtacatttggatgcaacgtgtggttta ctcatatttgtgtttatgctatgttttgccatttgggcagAGAAGGTTCTCCAATAACAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGG AATGCAACCTGTTCTCACAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGgtaaattgcttgaagaacctcttactattagggtttaaatcat tcctgtttcttacttctttgtgttattgttaccatctaaggctgtctaataaggtaatttattgtttttagTATTCTGGGTTCACCTTTCTTGCTAAACA TGAAGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCTATTACTCAATATATGCGTTTTTCGTCTTTCTCTTCAACATATTTGACAT TgtgagtaaatccattacactttttctcagtctgaatttcagtcttccaatgaacattaaacattacatttaccgggtttcttgttttgttatgtagGCC AACTTGCCAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCGAGAATACCGAACATAAAGCCTGGGAAAGCCACAATCGAGTACTTAACGAAGATAC AAGCATCAACTAGGTTTTGGGgtaagttaagctgtttcattttagatatattgcgtatatggtacaagtataatctctaaaaaccatttcatttggtttg atgcagGTGGCCTTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCAATCAAGGCTTTTCTATCGGATTTACATC TGTTTTGATCATTgtaagtgttctttccacgtatcaatatcattcagtttagcagtattgatgtcgttgtgttaataatctctattgtttgtgtacagGT TGGTTCCATTATTGAACTCAGAAGATCTTACCATGCCTACAATGTAATGCCGAGTTTAAGCAAAGCGTTAAAGAGATATGGCGTATAAagggagattgga gaaacagaagaacttatagatatattattgtcgtttaaactttagaagtttctgtagctcttttgattagtagattaggcattagataatttgtattaag aaccaaaacacatttccatcataatattagaagacttaaaacccaagggccaagtatcacaagcatttgcggaaagattatgcaggaatagtcgaacttc ataaatgtctgcaaatactccgagaattattgaacttgaaactgatttcttttcttcgtttgtccagaaaatgagagtcaattgatttagttgtggcata tttggcactaataggagccaaagttacatttgattcataaacgaaagtccacaactagtcgcattaaagaaacaagaaaattaattgtgtcagttttgca act
Border_1 (24018_LB2D)
ACAAGGGACTATAAGACTCAAATGACATGAGAACACTCACCAACAGAACCCGAGACAAAGCTAAGGTAATCTTGAGGTATTAATCTTCTGTCGAATCCAG
GTAAAGGTATAAAATATCCAACACGGCTAAGTACAAGCAAAACAGCCGTTACAAACAACCTCCTCCTTATCTCGCTCTTAAAGAATCTTTCTGCTGCAGT
ATTGAGTACTGAACTTATCCGAACAAAATCAAGAAACCTATTTCTAAAAGACTTTGGCCTATCATCCTGTAGTGTGTTGGAGACAGCAGAGTTCTGTGAA
TTACGAATGTCCTGTGAATCTGGCGGAATAATCTCCACATCCAAAGCATCTGTATGCATCTCCTCGTTACCTCATAA
| Start of BLAST Alignment: | NT 569 / Intron 1 of 11 |
| First 15 bp Perfect Match: | NT 569 / Intron 1 of 11 |
BLAST Details: Query Sequence: 24018_LB2D Length: (377 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31530 68415.t03575 secY family protein low similarity... 1856 1.3e-79 1 >At2g31530 68415.t03575 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein Length = 3057 Minus Strand HSPs: Score = 1856 (284.5 bits), Expect = 1.3e-79, P = 1.3e-79 Identities = 374/376 (99%), Positives = 374/376 (99%), Strand = Minus / Plus Query: 376 TATGAGGTAACGAGGAGATGCATACAGATGCTTTGGATGTGGAGATTATTCCGCCAGATT 317 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 TATGAG-TAGCGAGGAGATGCATACAGATGCTTTGGATGTGGAGATTATTCCGCCAGATT 253 Query: 316 CACAGGACATTCGTAATTCACAGAACTCTGCTGTCTCCAACACACTACAGGATGATAGGC 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 CACAGGACATTCGTAATTCACAGAACTCTGCTGTCTCCAACACACTACAGGATGATAGGC 313 Query: 256 CAAAGTCTTTTAGAAATAGGTTTCTTGATTTTGTTCGGATAAGTTCAGTACTCAATACTG 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 CAAAGTCTTTTAGAAATAGGTTTCTTGATTTTGTTCGGATAAGTTCAGTACTCAATACTG 373 Query: 196 CAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGAGGTTGTTTGTAACGGCTGTTTTGC 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 CAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGAGGTTGTTTGTAACGGCTGTTTTGC 433 Query: 136 TTGTACTTAGCCGTGTTGGATATTTTATACCTTTACCTGGATTCGACAGAAGATTAATAC 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 TTGTACTTAGCCGTGTTGGATATTTTATACCTTTACCTGGATTCGACAGAAGATTAATAC 493 Query: 76 CTCAAGATTACCTTAGCTTTGTCTCGGGTTCTGTTGGTGAGTGTTCTCATGTCATTTGAG 17 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 CTCAAGATTACCTTAGCTTTGTCTCGGGTTCTGTTGGTGAGTGTTCTCATGTCATTTGAG 553 Query: 16 TCTTATAGTCCCTTGT 1 |||||||||||||||| Sbjct: 554 TCTTATAGTCCCTTGT 569
Border_2 (24018_LB1U)
GATATCAAATTGACGCCGGCGATAATTTGTTTTTGATAGAGGAACTGGGTGAGTTTGGAGCAGAGATCAAGCTTTCCGCTCTTCCAGCTTGGGCTCAGTC
CACAAATAATAGCATCCATAATTATGCAGGTTAAGATCTCTCCTCGATTTGATGTGTTTGCCTGAGTCTGTGCGTTCTTTATATATTAAGATTATGATTG
ATGATAAAGTGCTCATGAAACACCAGGTGCTTTGTCACGTTCTTCCATCCTTGGTGAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAG
TTATATGTGTGTTTAGTTTCTTACCTCTCAAGCCGTGAGATGAATTCTTAACATACAATTACTTTGTTTGTCTTGTGACTTTTTTGCTTCATTAAACAAA
GTTACTAAATCGCCTTTTTGGTCGTTATTTTATTAGATGGTGGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAA
TATTCAGTTTTTGCAGCCACTGCCCAGNAAGTTAATTAGGANTCTTCACGTTCGGGGTATCAAAATGGNGCTTTTAAATTCTATCATCCATTTTNGCCAC
AACTGATGCTAAAGTAATAATGCATGCTTATT
| Start of BLAST Alignment: | NT 601 / Intron 1 of 11 |
| First 15 bp Perfect Match: | NT 607 / Intron 1 of 11 |
BLAST Details: Query Sequence: 24018_LB1U Length: (632 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31530 68415.t03575 secY family protein low similarity... 2962 1.5e-129 1 At1g21630 68414.t02427 calcium-binding EF hand family pro... 191 0.93 1 At5g52890 68418.t06097 AT hook motif-containing protein c... 182 0.999 1 At5g40260 68418.t04547 nodulin MtN3 family protein simila... 179 0.9999 1 >At2g31530 68415.t03575 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein Length = 3057 Plus Strand HSPs: Score = 2962 (450.5 bits), Expect = 1.5e-129, P = 1.5e-129 Identities = 602/611 (98%), Positives = 602/611 (98%), Strand = Plus / Plus Query: 22 ATAATTTGTTTTTGATAGAGGAACTGGGTGAGTTTGGAGCAGAGATCAAGCTTTCCGCTC 81 || | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 602 ATTTTATGTTTTTGATAGAGGAACTGGGTGAGTTTGGAGCAGAGATCAAGCTTTC-GCTC 660 Query: 82 TTCCAGCTTGGGCTCAGTCCACAAATAATAGCATCCATAATTATGCAGGTTAAGATCTCT 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 TTCCAGCTTGGGCTCAGTCCACAAATAATAGCATCCATAATTATGCAGGTTAAGATCTCT 720 Query: 142 CCTCGATTTGATGTGTTTGCCTGAGTCTGTGCGTTCTTTATATATTAAGATTATGATTGA 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 CCTCGATTTGATGTGTTTGCCTGAGTCTGTGCGTTCTTTATATATTAAGATTATGATTGA 780 Query: 202 TGATAAAGTGCTCATGAAACACCAGGTGCTTTGTCACGTTCTTCCATCCTTGGTGAAACT 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 TGATAAAGTGCTCATGAAACACCAGGTGCTTTGTCACGTTCTTCCATCCTTGGTGAAACT 840 Query: 262 GCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTGTTTAGTTTCT 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 GCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTGTTTAGTTTCT 900 Query: 322 TACCTCTCAAGCCGTGAGATGAATTCTTAACATACAATTACTTTGTTTGTCTTGTGACTT 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 TACCTCTCAAGCCGTGAGATGAATTCTTAACATACAATTACTTTGTTTGTCTTGTGACTT 960 Query: 382 TTTTGCTTCATTAAACAAAGTTACTAAATCGCCTTTTTGGTCGTTATTTTATTAGATGGT 441 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 961 TTTTGCTTCATTAAACAAAGTTACTAAATCGCCTTTTTGGTC-TTATTTTATTAGATGGT 1019 Query: 442 GGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAAT 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1020 GGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAAT 1079 Query: 502 ATTCAGTTTTTGCAGCCACTGCCCAGNAAGTTAATTAGGANTCTTCACGTTCGGGGTATC 561 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct: 1080 ATTCAGTTTTTGCAGCCACTGCCCAGTAAGTTAATTAGGATTCTTCACGTTCGGGGTATC 1139 Query: 562 AAAATGGNGCTTTTAAATTCTATCATCCATTTTNGCCACAACTGATGCTAAAGTAATAAT 621 ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1140 AAAATGGTGCTTTTAAATTCTATCATCCATTTT-GCCACAACTGATGCTAAAGTAATAAT 1198 Query: 622 GCATGCTTATT 632 ||||||||||| Sbjct: 1199 GCATGCTTATT 1209 >At1g21630 68414.t02427 calcium-binding EF hand family protein contains INTERPRO:IPR002048 calcium-binding EF-hand domain; ESTs gb|T44428 and gb|AA395440 come from this gene Length = 7000 Plus Strand HSPs: Score = 191 (34.7 bits), Expect = 2.7, P = 0.93 Identities = 139/226 (61%), Positives = 139/226 (61%), Strand = Plus / Plus