PDF Help

At1g78630 SYNGENTA 24154

Genomic Sequence (from TAIR)

TAAAGCTGATCTAGAAGAATTTAAGAGTAGAGTTGACGAAATCGTTGCCATgacttagcttgcttccgaagaagacctttctctcctattgagaaaaaaa
aaacagtatttcgggttgaatccggagctccgaaaaaaacccggatccttaacccgtgttgtgtttatttttcggtcgtattcatcagattatttacggt
gttgccactactactatttactgagaacccaatcttatccgagaaatcggaaagagcagaagaaatttgcagaagagagaaaaacaaaaATGGCGGTTCT
TTGCTCGTCTTCGACGGTGATACTCTCTTCTTCTTCCGTGAAATCCTCCGGAAGTGAGAGAAAGTCTCCGTTTTTAGGGTTCTCTTTAACGGCTATCTCG
AAGCCGTCGGTACGAGTCGGCATTTATGCGAATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGCCGACGACGACGACTTCTCTTGTTCCGGCGA
ATCAACGATGGATGTTCGACGAAGAAGAAGCTAATGGCCCTgtaacgataatttttctatctccctctgtgtttagcatctacgcatttataaagtgtcg
cactttagctcttgctttgaatttgaagtatggcttgtttttttcttctcccaattgcgatttattaagtagtggattttgcctttgactcattagctgt
gttgtctgcatcaattggcttcgaaaattgatgtttattcttctgaatttgttaacttggacgttttatgaaattattaatgtttggttggagagaagtt
aaaagtctttggcttgaaacctttattgagtgtattctatggtttacagGACATCTGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACG
GACAAGCCCTGGTTTGTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCGACAATTGCTAATCACATCCGTGGGAAGAATCTTGCCTCTTACA
CTCCTAGTGTCGACATGGGAGCTTTTGTGATTGTGgtatgagtttctttgagctatctgtagagaataagaaatttgatgtgctgctttagttaatttct
tcctgaaggaggagccttgggatttggttttagtaagattcacattagcagcaagatgtagagcctctatgtagatgtttgggcaatgcttgtaacttgg
tacctctaatactgttttcaattgtttggttaaagGTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAACCAAAAGCTGTACAGGAGGCATTC
AGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATTCCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAG
GGACGGgttagatacataatccacagctctttattagtctcctttaagtcttaacacttagc►aaatccgtgtttcttcaaacttatggattgaacttgg
a◄aactacttgtt►gcgatattggtattgattgattactagtt◄ttccaactccctcttaactttggtctgaccattttgtggcagCTTGGGAGAGCTCT
GTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGCCCAGAAACCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAA
TAGaagctccaccactgttccattatcgccaagcgcagagagttttttcttctcaggtttctgtagtttcttcatcccaaaaccagaggaggctttacag
attcttgttttcgcttctatcaactctgttatgctacaaaactttctaatttgaaatatttctcgttatttttttttgctactgaatatcttcttcaaca
tgaaaaagatgacatgtaatgaatacaaatgccataagcaacagtagtcaccattaacaaaaacttcctcttcaattggtaacaaaccttcccaatgaga
tcac

Border_1 (24154_LB1U)


AATC:AATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCCAAGTTCAATCCATAAGTTTGAAGAAACACGGATT
TGCTAAGTGTTAAGACTTAAAGGAGACTAATAAAGAGCTGTGGATTATGTATCTAACCCGTCCCTTTGGAAGCATTCCACGAACAGCATGCCTCAACGAT
TCTTTCAGGAATTCTCTGCTGCAWATTGATCAAATGTCTCTGCTGTCATACCACCAGGTCGTCCTGAATGCCTCCTGTACAGCTTTTGGYTACGCTTYTT
TCCAGATMMRGCAACTTTCTCAGCATTCACCTTTAACCAAACAATTGAAAACAGTATTAGAGGTACCAATGTTACAAGCATTGCCCAAACATCTACATAG
AGGCTCTACATCTTGCTGCTAATGTGAATCTTACTAAAACCAAATCCCAAGGCTCCTCCTTCAGGAAGAAATTAACTAAAGCAGCACATCAAATTTCTTA
TTCTCTACAGATAGCTCAAAGAAACTCATACCACAATCACAAAAGCTTCCCATGTCNACCACTAGGAGKGNAAGAGGCAAGATTCNTTCCCACGGRTGGT
GATTARCAAATTGNCCGATGCCCAATCTACCCAAGAATTTTGGCMGGTTGGCATCAACCCCCAAACCCAGGNGCTTGGCCCCGKGTTCCCAWTGGNCTGA
AANCTTTTKGGAANCCCATGNNGGGGTTCCMAAARGCCCTGGAAANCCATTAAAAAACCCNYTAATAAARGGTTTCAAGGCCMAAARAYTTTWTAACCTT
CCT

Start of BLAST Alignment:	NT 1251 / Intron 3 of 3
First 15 bp Perfect Match:	NT 1211 / Intron 3 of 3

BLAST Details:
Query Sequence: 24154_LB1U 
Length: (801 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g78630 68414.t08381 ribosomal protein L13 family prote...  2689  5.6e-117  1
At3g08890 68416.t00924 expressed protein contains Pfam pr...   196  0.89      1


>At1g78630 68414.t08381 ribosomal protein L13 family protein similar to
           ribosomal protein L13 GI:170132 from [Spinacia oleracea]
        Length = 1703

  Minus Strand HSPs:

 Score = 2689 (409.5 bits), Expect = 5.6e-117, P = 5.6e-117
 Identities = 584/629 (92%), Positives = 593/629 (94%), Strand = Minus / Plus

Query:   646 ACCKGCCAAAATTCTTGGGTAGATTGGGCATCGGNCAATTTGYTAATCACCAYCCGTGGG 587
             | |+| |||||||||||| |||||||| |||||  ||||| |+||||||| |+|||||||
Sbjct:   679 AACTGACAAAATTCTTGG-TAGATTGG-CATCG-ACAATT-GCTAATCAC-ATCCGTGGG 733

Query:   586 AANGAATCTTGCCTCTTNCMCTCCTAGTGGTNGACATGGGAAGCTTTTGTGATTGTGGTA 527
             || |||||||||||||| |+||||||||| | ||||||||| ||||||||||||||||||
Sbjct:   734 AA-GAATCTTGCCTCTTACACTCCTAGTG-TCGACATGGGA-GCTTTTGTGATTGTGGTA 790

Query:   526 TGAGTTTCTTTGAGCTATCTGTAGAGAATAAGAAATTTGATGTGCTGCTTTAGTTAATTT 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   791 TGAGTTTCTTTGAGCTATCTGTAGAGAATAAGAAATTTGATGTGCTGCTTTAGTTAATTT 850

Query:   466 CTTCCTGAAGGAGGAGCCTTGGGATTTGGTTTTAGTAAGATTCACATTAGCAGCAAGATG 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   851 CTTCCTGAAGGAGGAGCCTTGGGATTTGGTTTTAGTAAGATTCACATTAGCAGCAAGATG 910

Query:   406 TAGAGCCTCTATGTAGATGTTTGGGCAATGCTTGTAACATTGGTACCTCTAATACTGTTT 347
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct:   911 TAGAGCCTCTATGTAGATGTTTGGGCAATGCTTGTAAC-TTGGTACCTCTAATACTGTTT 969

Query:   346 TCAATTGTTTGGTTAAAGGTGAATGCTGAGAAAGTTGCYKKATCTGGAAARAAGCGTARC 287
             ||||||||||||||||||||||||||||||||||||||+++|||||||||+|||||||+|
Sbjct:   970 TCAATTGTTTGGTTAAAGGTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAAC 1029

Query:   286 CAAAAGCTGTACAGGAGGCATTCAGGACGACCTGGTGGTATGACAGCAGAGACATTTGAT 227
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct:  1030 CAAAAGCTGTACAGGAGGCATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGAT 1089

Query:   226 CAATWTGCAGCAGAGAATTCCTGAAAGAATCGTTGAGGCATGCTGTTCGTGGAATGCTTC 167
             |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct:  1090 CAAT-TGCAGCAGAGAATTCCTGAAAGAATCGTTGAG-CATGCTGTTCGTGGAATGCTTC 1147

Query:   166 CAAAGGGACGGGTTAGATACATAATCCACAGCTCTTTATTAGTCTCCTTTAAGTCTTAAC 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1148 CAAAGGGACGGGTTAGATACATAATCCACAGCTCTTTATTAGTCTCCTTTAAGTCTTAAC 1207

Query:   106 ACTTAGCAAATCCGTGTTTCTTCAAACTTATGGATTGAACTTGGACA--ACTTAATAACA 49
             ||||||||||||||||||||||||||||||||||||||||||||| |  ||||  |   |
Sbjct:  1208 ACTTAGCAAATCCGTGTTTCTTCAAACTTATGGATTGAACTTGGAAACTACTTGTTGCGA 1267

Query:    48 CATTGCGGACGTTTTTAATGTACTGAATT 20
              |||| | |  |  || || |||| | ||
Sbjct:  1268 TATTG-GTAT-TGATTGAT-TACT-AGTT 1292


>At3g08890 68416.t00924 expressed protein contains Pfam profile PF04398:
           Protein of unknown function, DUF538
        Length = 2112

  Minus Strand HSPs:

 Score = 196 (35.5 bits), Expect = 2.2, P = 0.89
 Identities = 103/169 (60%), Positives = 104/169 (61%), Strand = Minus / Plus

Border_2 (24154_LB2D)


AATCGAATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTCAGTACTTATGCGATATTGGTATTGATTGATTACTAGTTTTCC
AACTCCCTCTTAACTTTGGTCTGACCATTTTGTGGCAGCTTGGGAGAGCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGC
CCAGAAACCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAGCTCCACCACTGTTCCATTATCGCCAAGCGCAGAGAGTTTTTT
CTTCTCAGGTTTCTGTAGTTTCTTCATCCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTCTGTTATGCTACAAAACTTTCTA
ATTTGAAATATTTCTCGTTATTTTTTTTTGCTACTGAATATCTTCTTCAACATGAAAAAGATGACATGTAATGAATACAAATGCCATAAGCAACAGTAGT
CACCATTAACAAAAACTTCCTCTTCAATTGGTAACAAACCTTCCCAATGAGATCACAGATGCAAGGAAAATCTAATATTCATGCCTTAATCGAGTCATTA
CTTAAAACTGAAATTTTTAATGCTGGATCCAAAATTTGAATGTTAAATATACATAATAATAGGAAATACCATTTGAATGGTTTGGAATCGCTAACGACTA
ANGCTAGATCCAAAATCCGGGTAGNATTCATATCATTATGGAAATTTTGGCATCCNAAAAAATTNAA

Start of BLAST Alignment:	NT 1173 / Intron 3 of 3
First 15 bp Perfect Match:	NT 1222 / Intron 3 of 3

BLAST Details:
Query Sequence: 24154_LB2D 
Length: (766 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g78630 68414.t08381 ribosomal protein L13 family prote...  2157  6.0e-93   1
At4g39180 68417.t05091 SEC14 cytosolic factor, putative /...   367  1.1e-08   1
At4g34730 68417.t04536 ribosome-binding factor A family p...   354  5.0e-08   1
At4g22680 68417.t03071 myb family transcription factor (M...   210  0.34      1


>At1g78630 68414.t08381 ribosomal protein L13 family protein similar to
           ribosomal protein L13 GI:170132 from [Spinacia oleracea]
        Length = 1703

  Plus Strand HSPs:

 Score = 2157 (329.7 bits), Expect = 6.0e-93, P = 6.0e-93
 Identities = 457/489 (93%), Positives = 457/489 (93%), Strand = Plus / Plus

Query:    21 AATTCAGTACAT-TAAAAACGTCCGCAATGTG-TTATTCAGTACTTAT-GCGATATTGGT 77
             || || ||   | |  |||| |  | | ||   ||    | ||||| | |||||||||||
Sbjct:  1215 AAATCCGTGTTTCTTCAAACTTATGGATTGAACTTGGAAACTACTTGTTGCGATATTGGT 1274

Query:    78 ATTGATTGATTACTAGTTTTCCAACTCCCTCTTAACTTTGGTCTGACCATTTTGTGGCAG 137
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1275 ATTGATTGATTACTAGTTTTCCAACTCCCTCTTAACTTTGGTCTGACCATTTTGTGGCAG 1334

Query:   138 CTTGGGAGAGCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAG 197
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1335 CTTGGGAGAGCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAG 1394

Query:   198 GCCCAGAAACCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAG 257
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1395 GCCCAGAAACCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAGAAG 1454

Query:   258 CTCCACCACTGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAG 317
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1455 CTCCACCACTGTTCCATTATCGCCAAGCGCAGAGAGTTTTTTCTTCTCAGGTTTCTGTAG 1514

Query:   318 TTTCTTCATCCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTC 377
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1515 TTTCTTCATCCCAAAACCAGAGGAGGCTTTACAGATTCTTGTTTTCGCTTCTATCAACTC 1574

Query:   378 TGTTATGCTACAAAACTTTCTAATTTGAAATATTTCTCGTTANNNNNNNNNGCTACTGAA 437
             ||||||||||||||||||||||||||||||||||||||||||         |||||||||
Sbjct:  1575 TGTTATGCTACAAAACTTTCTAATTTGAAATATTTCTCGTTATTTTTTTTTGCTACTGAA 1634

Query:   438 TATCTTCTTCAACATGAAAAAGATGACATGTAATGAATACAAATGCCATAAGCAACAGTA 497
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1635 TATCTTCTTCAACATGAAAAAGATGACATGTAATGAATACAAATGCCATAAGCAACAGTA 1694

Query:   498 GTCACCATT 506
             |||||||||
Sbjct:  1695 GTCACCATT 1703


>At4g39180 68417.t05091 SEC14 cytosolic factor, putative / phosphoglyceride
           transfer protein, putative phosphatidylinositol-phosphatidylcholine
           transfer protein SEC14, Yarrowia lipolytica, PIR2:S43745; contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
           N-terminus
        Length = 5032

  Minus Strand HSPs:

 Score = 367 (61.1 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 143/208 (68%), Positives = 143/208 (68%), Strand = Minus / Plus