At5g16620 SYNGENTA 2490
Genomic Sequence (from TAIR)
agaaaaatctgaatcacagtactaacatcattgattttctgctacaaaaatgagtgtacactgattcttaaaatagatacgggctataacataacaaaaa gaaaaagtgggggatggcttttgcaataatctcgaaagagtttctcactcacatcacacccttggtttataaataaaactcattgatcttgacggtgaaa atatcgccacctgttaatttgtaaaaaggtttcagtacacttagctacactggatccaagtctagtgctaaactcaaacctcgtggttttagaccaaaat ctcttcttcttcgtttccttcttcctcatcatatctttcatcttctccaccagaatttgttttaggctctccttcttctgtttctttttctcccaaagaa acaattagatATGGAGAACCTTACCCTAGTTTCTTGCTCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTGAAAAACCCTACT GGGTTTTCTCGTCGGACTCCTAATATTGTCCTCCGGTGTTCCAAAATATCTGCCTCTGCTCAATCTCAATCTCCCTCTTCGCGTCCGGAGAACACTGGAG AAATCGgttagtttgcaaattccactcgacactctattatagcaaatgccaaaattttccggaaaaatttccagtttattacttttatctatcttattga aactcaaattgcgaacccttttcgactggtttaatatgagcttatgaattgctatatctcttaaaaaaatccacactttgtgaatttgcaatttgaattc ttgtagaaaccattcattgttagaattgtttactttaagtttatgttcgatttgcagTGGTTGTGAAACAGAGAAGCAAAGCTTTTGCAAGTATATTTTC TTCGAGTCGTGATCAACAGACAACTTCTGTTGCTTCCCCTAGTGTGCCTGTGCCACCACCATCTTCATCAACCATgtaattttcctggttttggacaatg tgcttagtttgtatgtcgtttgattcttggttattaaattgtgttttttcttttttcttgtagAGGATCACCACTTTTCTGGATTGGTGTTGGTGTTGGT CTATCAGCTTTGTTCTCATATgtgagtatcaagattccttcctaatttttttttcctctataaatattctttcttgcttcaatattgattaataagtgct tgaccttttttcttttctgatggcattgcagGTAACTTCAAATTTAAAGgtacagatacttggccctctggttttacgggacttttgttctctagtctgt tgcagaaccacgattttatgcttcatgtcaactctagtgtattgtgctcatgtatctgagatagttttattcactaaactggttatcttaacaaggtgaa ctgtttgctcacacttgttgaaccgtttatataagcatcgaacttttgcctctctttttttgggtagtcacttgattcgtagatggtaacctacatacca ttatggttttagtgatgcaactcaggtattcagacttatagtcattttcgcaactccagtatttgattgaaatatattatacaagttgtcattgctttct ctcattattctctaaccggctgttactctctttggatttttttttttgctttggtttagAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCA AATGAATACGCAAAATAGCCAGTTTAATAATTCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTTCCTCCTCAAACAAGTCCTGCTTCCTCGCCA TTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGTTGATGTGACAGCGACAAAAGTAGAGACACCTCCTTCAACTAAACCGAAACCTACACCTGCAAAGG ATATAGAGGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGAAGAAAAGAACTATGgtagattctttttctgtttcagaaatcaacg tcttttcatttgtattctcaattttgactttcttcctttctcattttccaagcttctaacttggaagctgatttacttttggatgcagCCTTTGAAGACA TTTCACCCGAGGAAACCACAAAAGAAAGCCCATTTAGCAACTATGCAGAAGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGATgtaag tttcgttttcttttgtatttccacagcacaccaagtggtgatttaaaaacgtgacatagttttgctaaccttctatgctctcttattgatctctgggtga agGTCTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATCTTTGGgtgagttattgaatttcagttttcatcactatca gcgcactgtgcatgattcatgattaaggctacggatttcaattttattttatagcatatgccaacaattataaacaaaggaagatatgaaattggtgata aagaggaatgagttggcttcaaaaggatctactccgttacttttgtccttctgctagtcgttgatctgtattggtataaccatataagacttgcaggata ttaccttggcaatctgtttcatatctcatgtgttatgattcttttttcttatatgctcacgttattgtctctcttttccttattctaaatttaaaactga atcctgagtctgtctattgtttacacagGTGG◄TGGGAAAGGAGGGCCGGGTTT◄ATCTGTAGAAGCTTTAGAGAAAATGATGGAAGATCCAACAGTCCA GAAGAT►GGTTTA►CCCgtaactcatcttccctagcacattgtctttaaatgcatccattaagtttatctttaaaactggttgcttagtggacatttggt aacattgcatgtataaatgcagATACTTGCCTGAGGAGATGAGGAACCCAGAAACTTTCAAATgtaagtcttttaatatttaatcctgctatcattcttt tattagtcctcatttttacatatttctaaagactaaaggttacatgactagcttttgaatgatgtaattcgtttataggttgatccaatggttatctaaa tttaaaatacagtttggtacttattgtctccgcttggaattttgtagGGATGCTTAAAAATCCTCAGTACCGTCAACAACTACAGGACATGTTgtaagag ctccattttacgaacaatttagttgtttccattgcttttaagaatgtctaaactatgtaattaagaaatactcttgtttgtttcttttcatgaatttagG AATAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGACCTGAATAGTCCTGAAGTGAAGCAACAATTCAgtaaga caaatctcagtttgtaccaagttaatagtacgttaaataggtctgatactcaatgattgaatctgtatttgtcagATCAAATAGGACTAACTCCAGAAGA AGTCATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAAgtacgttttcttttaacctga ataagagaattgcttaattttaccccacttctttcttcatacaaaacagaaaccaattacattcttgttgttgttgcagTGCTCAGAGAACCCAATGAAC ATCATGAAGTACCAAAACGACAAAGAGgtaataatactgccacttctccattgcccaaaaaggcgattacttttttaagaaatttgaggttattatacat tgattgcagGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGAaaaagctcacgtctttggttctatcaaaaatgtcaca ttgtctttagctttttgtagggagaaaaaaatgtttttttttttgcaaagagtcttcagttttggtcagatcagagaattgtgtaccatgttaatcttaa acgcggtcgggaattggagtcgtgtgaaaacgccgctgctgttgtttggtatgaatattatacaatagaatttgttgtcttaccaaaaaaagtctatgaa gacactgaagagcaaattattatttttaagggaaaatttccaaaataaacttcatgtattcaaaatttgcttgaaaaaacctcaattttttttgtttgag attgtgtgaataaatctgccaatattttgttttagcaatttaaaaaattgaagtttttttctcgcaaattttaaatagttgtgatttattttggaatttt acct
Border_1 (2490_RBD)
WTNMRYCCCATTGAAMMMCCSGCCCTCCTTTCCCCCACCTGTGTAAACAATAGACAGACTCAGGATTCAGTTTTAAATTTAGAATTWGGAAAAGAGAGAC
AATAACGTGAGCATATAAGAAAAAAGAATCATAACACATGAGATATGAAACAGATTGCCAAGGTAATATCCTGCAAGTCTTATATGGTTATACCAATACA
GATCAACGACTAGCAGAAGGACAAAAGTAACGGAGTAGWTCCTTTGATGAAGCCAACTCATTCCTCTTTATCACCAATTTCATATCTTCCTTTGTTTATA
ATTGTTGGCATATGCTATAAAATAAAATTGAAATCCGTAGCCTTAATCATGAATCATGCACAGTGCGCTGATAGTGATGAAAACTGAAATTCAATAACTC
ACCCAAAGATTGAAAAACCTCTGAAGCAGTGGCACCATTTGCCGGACCAGCTCCATTTTGCAAGACCTTCACCCAGAGATCAATAAG:AGAGCATAGAA:
GGTTAGCAAAACTATGTCACGTTTTTAAATCACCACTTGG:TGTGCTGTGG:AAATACAAAAGAAAAC:GAAACTTACATCCTCAAACAAGC:GAGTTTC
TTTGGGGG:AATTAG:TTTCAGAGACTTCTGCATAG:TTGCTAAATGGGCTTTCTTTTGTGGTTTCCTCGGGTGAAATG:TCTTCAAAGG:CT:GCATCC
AAAAGTAAATCAGCTTCCAAGTTAGAAGCTTGGAAAATGAGAAAGGAAGAAAGTCAAAATTGAGAATACAAATGAAAAGGACGTT:GATTTCTGAAACAG
AAAAAGAATCTACCATAGTT:CTTTTCTTCTTTCTTCTCTTTGCTTGCCTCTAAGACAACACTTGGCTTATCCACCTCTATATCCTTTGCAGGKGTAGKT
TT:CGGGTTTAGTTGAAGGNAAGGKGGTCTCTACTTTTGKC:GCTGT:CACATCAACGGTAGCACCTGAAGACTGGGATTGAGATTGGAATGGCGAGGGA
AGCAGGACTTGTTTGAGGAGGAAATGGGAAACGGAAARGGTGATCCCTGATGGGGAATCCANGAATTATTAAACTGGCTATTTTGCGTAATTCATTTNGG
GTTCATCAWYSGTCTTCATARNCTGKTTGCATTGSCTWWTTYCTAAACCM
| Start of BLAST Alignment: | NT 2343 / Exon 8 of 14 |
| First 15 bp Perfect Match: | NT 2322 / Exon 8 of 14 |
BLAST Details: Query Sequence: 2490_RBD Length: (1133 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g16620 68418.t01766 hydroxyproline-rich glycoprotein f... 4903 2.5e-217 1 At4g14150 68417.t02070 phragmoplast-associated kinesin-re... 248 0.017 1 At1g06590 68414.t00624 expressed protein 213 0.51 1 At1g71080 68414.t07507 expressed protein 199 0.93 1 >At5g16620 68418.t01766 hydroxyproline-rich glycoprotein family protein contains proline rich extensin domains, INTERPRO:IPR002965 Length = 3810 Minus Strand HSPs: Score = 4903 (741.7 bits), Expect = 2.5e-217, P = 2.5e-217 Identities = 1002/1026 (97%), Positives = 1013/1026 (98%), Strand = Minus / Plus Query: 1039 TCCCCATCAGGGATCACCYTTTCCGTTTCCCATTTCCTCCTCAAACAAGTCCTGCTTCCC 980 | ||||||||| ||||||+||||||||||| |||||||||||||||||||||||||||| Sbjct: 1440 TTCCCATCAGG-ATCACCTTTTCCGTTTCC-ATTTCCTCCTCAAACAAGTCCTGCTTCC- 1496 Query: 979 TCGCCATTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGTTGATGTGACAGCGMCAAAA 920 ||||||||||||||||||||||||||||||||||||||||||||||||||||||+||||| Sbjct: 1497 TCGCCATTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGTTGATGTGACAGCGACAAAA 1556 Query: 919 GTAGAGACCMCCTTNCCTTCAACTAAACCCGAAAMCTACMCCTGCAAAGGATATAGAGGT 860 |||||||| +||| |||||||||||||| ||||+||||+|||||||||||||||||||| Sbjct: 1557 GTAGAGAC-ACCT--CCTTCAACTAAACC-GAAACCTACACCTGCAAAGGATATAGAGGT 1612 Query: 859 GGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGAAGAAAAGAACTATGG 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1613 GGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGAAGAAAAGAACTATGG 1672 Query: 799 TAGATTCTTTTTCTGTTTCAGAAATCAACGTCCTTTTCATTTGTATTCTCAATTTTGACT 740 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1673 TAGATTCTTTTTCTGTTTCAGAAATCAACGTC-TTTTCATTTGTATTCTCAATTTTGACT 1731 Query: 739 TTCTTCCTTTCTCATTTTCCAAGCTTCTAACTTGGAAGCTGATTTACTTTTGGATGCAGC 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1732 TTCTTCCTTTCTCATTTTCCAAGCTTCTAACTTGGAAGCTGATTTACTTTTGGATGCAGC 1791 Query: 679 CTTTGAAGACATTTCACCCGAGGAAACCACAAAAGAAAGCCCATTTAGCAACTATGCAGA 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1792 CTTTGAAGACATTTCACCCGAGGAAACCACAAAAGAAAGCCCATTTAGCAACTATGCAGA 1851 Query: 619 AGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGATGTAAGTTTCGTTTT 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1852 AGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGATGTAAGTTTCGTTTT 1911 Query: 559 CTTTTGTATTTCCACAGCACACCAAGTGGTGATTTAAAAACGTGACATAGTTTTGCTAAC 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1912 CTTTTGTATTTCCACAGCACACCAAGTGGTGATTTAAAAACGTGACATAGTTTTGCTAAC 1971 Query: 499 CTTCTATGCTCTCTTATTGATCTCTGGGTGAAGGTCTTGCAAAATGGAGCTGGTCCGGCA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1972 CTTCTATGCTCTCTTATTGATCTCTGGGTGAAGGTCTTGCAAAATGGAGCTGGTCCGGCA 2031 Query: 439 AATGGTGCCACTGCTTCAGAGGTTTTTCAATCTTTGGGTGAGTTATTGAATTTCAGTTTT 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2032 AATGGTGCCACTGCTTCAGAGGTTTTTCAATCTTTGGGTGAGTTATTGAATTTCAGTTTT 2091 Query: 379 CATCACTATCAGCGCACTGTGCATGATTCATGATTAAGGCTACGGATTTCAATTTTATTT 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2092 CATCACTATCAGCGCACTGTGCATGATTCATGATTAAGGCTACGGATTTCAATTTTATTT 2151 Query: 319 TATAGCATATGCCAACAATTATAAACAAAGGAAGATATGAAATTGGTGATAAAGAGGAAT 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2152 TATAGCATATGCCAACAATTATAAACAAAGGAAGATATGAAATTGGTGATAAAGAGGAAT 2211 Query: 259 GAGTTGGCTTCATCAAAGGAWCTACTCCGTTACTTTTGTCCTTCTGCTAGTCGTTGATCT 200 |||||||||||| ||||||+||||||||||||||||||||||||||||||||||||||| Sbjct: 2212 GAGTTGGCTTCA--AAAGGATCTACTCCGTTACTTTTGTCCTTCTGCTAGTCGTTGATCT 2269 Query: 199 GTATTGGTATAACCATATAAGACTTGCAGGATATTACCTTGGCAATCTGTTTCATATCTC 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2270 GTATTGGTATAACCATATAAGACTTGCAGGATATTACCTTGGCAATCTGTTTCATATCTC 2329 Query: 139 ATGTGTTATGATTCTTTTTTCTTATATGCTCACGTTATTGTCTCTCTTTTCCWAATTCTA 80 ||||||||||||||||||||||||||||||||||||||||||||||||||||+ |||||| Sbjct: 2330 ATGTGTTATGATTCTTTTTTCTTATATGCTCACGTTATTGTCTCTCTTTTCCTTATTCTA 2389 Query: 79 AATTTAAAACTGAATCCTGAGTCTGTCTATTGTTTACACAGGTGG-GGGAAAGGAGGGCS 21 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||+ Sbjct: 2390 AATTTAAAACTGAATCCTGAGTCTGTCTATTGTTTACACAGGTGGTGGGAAAGGAGGGCC 2449 Query: 20 GGKKKT 15 ||+++| Sbjct: 2450 GGGTTT 2455 >At4g14150 68417.t02070 phragmoplast-associated kinesin-related protein (PAKRP1) Length = 6437 Plus Strand HSPs: Score = 248 (43.3 bits), Expect = 0.017, P = 0.017 Identities = 356/647 (55%), Positives = 358/647 (55%), Strand = Plus / Plus
Border_2 (2490_LBU)
TGGTAATTACTCTTTCTTTTTCTCCATATTACTCTTTCTTTTCTCTTAGGTTTTCCCGTAACTCATCTTCCCTAGCACATTGTCTTTAAATGCATCCATT
AAGTTTATCTTTAAAACTGGTTGCTTAGTGGACATTTGGTAACATTGCATGTATAAATGCAGATACTTGCCTGAGGAGATGAGGAACCCAGAAACTTTCA
AATGTAAGTCTTTTAATATTTAATCCTGCTATCATTCTTTTATTAGTCCTCATTTTTACATATTTCTAAAGACTAAAGGTTACATGACTAGCTTTTGAAT
GATGTAATTCGTTTATAGGTTGATCCAATGGTTATCTAAATTTAAAATACAGTTTGGTACTTATTGTCTCCGCTTGGAATTTTGTAGGGATGCTTAAAAA
TCCTCAGTACCGTCAACAACTACAGGACATGTTGTAAGAGCTCCATTTTACGAACAATTTAGTTGTTTCCATTGCTTTTAAGAATGTCTAAACTATGTAA
TTAAGAAATACTCTTGTTTGTTTCTTTTCATGAATTTAGGAATAATATGAGTGGGGAAGTGGTGAAATGGGGACCATGCCGAAATGGACANGATWCCATT
TGGAAGAAAATTTTGGACCCTGGAA
| Start of BLAST Alignment: | NT 2394 / Exon 8 of 14 |
| First 15 bp Perfect Match: | NT 2400 / Exon 8 of 14 |
BLAST Details: Query Sequence: 2490_LBU Length: (625 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g16620 68418.t01766 hydroxyproline-rich glycoprotein f... 2572 4.8e-112 1 At1g01050 68414.t00005 inorganic pyrophosphatase, putativ... 216 0.13 1 At3g04010 68416.t00383 glycosyl hydrolase family 17 prote... 209 0.28 1 At3g43880 68416.t04356 hypothetical protein p97 homologou... 195 0.35 1 >At5g16620 68418.t01766 hydroxyproline-rich glycoprotein family protein contains proline rich extensin domains, INTERPRO:IPR002965 Length = 3810 Plus Strand HSPs: Score = 2572 (392.0 bits), Expect = 4.8e-112, P = 4.8e-112 Identities = 532/542 (98%), Positives = 532/542 (98%), Strand = Plus / Plus Query: 49 GGTTTTCCCGTAACTCATCTTCCCTAGCACATTGTCTTTAAATGCATCCATTAAGTTTAT 108 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2507 GGTTTACCCGTAACTCATCTTCCCTAGCACATTGTCTTTAAATGCATCCATTAAGTTTAT 2566 Query: 109 CTTTAAAACTGGTTGCTTAGTGGACATTTGGTAACATTGCATGTATAAATGCAGATACTT 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2567 CTTTAAAACTGGTTGCTTAGTGGACATTTGGTAACATTGCATGTATAAATGCAGATACTT 2626 Query: 169 GCCTGAGGAGATGAGGAACCCAGAAACTTTCAAATGTAAGTCTTTTAATATTTAATCCTG 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2627 GCCTGAGGAGATGAGGAACCCAGAAACTTTCAAATGTAAGTCTTTTAATATTTAATCCTG 2686 Query: 229 CTATCATTCTTTTATTAGTCCTCATTTTTACATATTTCTAAAGACTAAAGGTTACATGAC 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2687 CTATCATTCTTTTATTAGTCCTCATTTTTACATATTTCTAAAGACTAAAGGTTACATGAC 2746 Query: 289 TAGCTTTTGAATGATGTAATTCGTTTATAGGTTGATCCAATGGTTATCTAAATTTAAAAT 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2747 TAGCTTTTGAATGATGTAATTCGTTTATAGGTTGATCCAATGGTTATCTAAATTTAAAAT 2806 Query: 349 ACAGTTTGGTACTTATTGTCTCCGCTTGGAATTTTGTAGGGATGCTTAAAAATCCTCAGT 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2807 ACAGTTTGGTACTTATTGTCTCCGCTTGGAATTTTGTAGGGATGCTTAAAAATCCTCAGT 2866 Query: 409 ACCGTCAACAACTACAGGACATGTTGTAAGAGCTCCATTTTACGAACAATTTAGTTGTTT 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2867 ACCGTCAACAACTACAGGACATGTTGTAAGAGCTCCATTTTACGAACAATTTAGTTGTTT 2926 Query: 469 CCATTGCTTTTAAGAATGTCTAAACTATGTAATTAAGAAATACTCTTGTTTGTTTCTTTT 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2927 CCATTGCTTTTAAGAATGTCTAAACTATGTAATTAAGAAATACTCTTGTTTGTTTCTTTT 2986 Query: 529 CATGAATTTAGGAATAATATGAGTGGGGAAGTGGTGAAATGGGGACCATGCCGAAATGGA 588 ||||||||||||||||||||||||||| | |||||||| |||| || | || ||| || | Sbjct: 2987 CATGAATTTAGGAATAATATGAGTGGG-A-GTGGTGAA-TGGG-ACAA-GC-GAA-TG-A 3038 Query: 589 CA 590 || Sbjct: 3039 CA 3040 >At1g01050 68414.t00005 inorganic pyrophosphatase, putative [soluble] / pyrophosphate phospho-hydrolase, putative / PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase Length = 1968 Plus Strand HSPs: Score = 216 (38.5 bits), Expect = 0.14, P = 0.13 Identities = 132/222 (59%), Positives = 132/222 (59%), Strand = Plus / Plus