At1g20960 SYNGENTA 26145
Genomic Sequence (from TAIR)
aagcatgagaccattgtcttattacgttgggcttaggaagtatgtacaggcccagcccaatccatgtacagagtcggtttcgttattggatccatagttt caaaacggcatcgttaaagttttccaccttaaggcggtatcgctagcttatagaaagaattcgcagtcgaataaacgaaggagtgtctcctttagtcatt taggtcgattattaggagatagaggacgtgagaagggagagatctgagtctcctactagggtttcttctactggattgattcgttgcagagagtgaagct aagaagagattttcgtagctgtttctgtaagttttttttaatctccgtttcctcgatttgggtgtggttttattagggtttatcatctctgggagcttct tcgtttcacttttggttcgtttcttcgatttgaggttaacattgtgtatttttttttgttcctgtttgatttggtttctaggttttcggattggtagATG GCGAACTTGGGAGGCGGTGCGGAAGCACATGCCAGGTTCAAGCAGTATGAGTACAGAGCCAATTCTAGTCTGGTGTTAACTACTGATAATAGACCTCGGG ATACTCATGAGCCTACAGGAGAACCGGAAACTCTGTGGGGGAAAATCGATCCGAGGTCTTTTGGTGACCGTGTTGCTAAGGGAAGGCCTCAGGAGTTGGA GGATAAGCTGAAAAAGTCTAAGAAGAAGGAACGTGATGTTGTAGATGATATGGTAAATATTAGGCAGAGTAAGAGGCGGCGTCTAAGGGAAGAGAGTGTG CTGACTGATACTGATGATGCGGTTTATCAGCCGAAGACTAAGGAGACGAGGGCTGCTTATGAAGCCATGCTTGGTCTTATCCAGAAGCAGTTGGGTGGGC AACCTCCGAGTATTGTTAGTGGTGCAGCGGATGAGATTTTGGCTGTTCTCAAGAATGACGCATTTAGAAACCCTGAGAAAAAGATGGAGATTGAGAAGTT GCTGAACAAGATTGAAAACCATGAGTTTGATCAGCTTGTTTCCATTGGAAAGTTAATCACGGACTTCCAAGAGGGTGGTGATTCTGGTGGTGGTAGAGCT AATGATGATGAAGGGCTTGATGATGATTTGGGCGTGGCTGTTGAATTTGAGGAGAATGAAGAAGATGATGAGGAAAGCGATCCTGATATGGTTGAAGAGG ATGATGATGAGGAGGATGATGAGCCTACCAGAACTGGAGGCATGCAGGTTGATGCAGGGATAAATGATGAGGATGCAGGAGATGCCAATGAGGGCACAAA TCTTAATGTTCAAGACATTGATGCATATTGGCTCCAGAGAAAGATCTCTCAAGCGTATGAACAGCAGATTGATCCACAACAATGCCAGGTACTCGCAGAA GAGCTACTAAAGATACTCGCTGAAGGGGATGATAGGGTTGTTGAGGACAAGCTGCTTATGCACCTTCAGTACGAAAAATTTAGCCTTGTCAAGTTTCTGC TGCGTAA◄CCGT►CTTA►AAGTT◄GTGTGGTGCACTCGTTTGGCTAGGGCAGAAGACCAGGAAGAGAGGAATAGAATCGAGGAGGAGATGAGGGGGTTAG GCCCAGAGTTGACAGCAATTGTGGAGCAGTTGCATGCAACAAGAGCAACAGCGAAAGAGAGGGAGGAGAACCTGCAAAAAAGTATTAACGAGGAAGCCCG GCGTTTGAAGGACGAAACTGGTGGAGATGGAGGCAGAGGCAGGAGAGATGTTGCTGATAGAGATTCAGAGAGTGGGTGGGTGAAGGGTCAGCGTCAGATG CTGGACCTGGAGAGCTTGGCTTTTGACCAAGGTGGTCTTCTGATGGCGAATAAGAAGTGTGACCTCCCCCCTGGCTCTTACAGAAGTCATGGCAAGGGAT ATGATGAAGTTCATGTGCCTTGGGTTTCTAAAAAGGTTGATAGGAATGAGAAGCTAGTGAAGATTACGGAAATGCCTGATTGGGCGCAACCGGCTTTTAA GGGAATGCAACAGTTGAACAGGGTTCAGAGCAAAGTGTATGACACTGCGCTTTTCAAGGCAGAGAATATTCTTCTTTGTGCTCCAACTGGTGCTGGGAAA ACCAATGTTGCTATGCTCACCATACTGCAGCAACTTGAAATGAATAGGAACACAGATGGAACTTATAACCATGGAGATTACAAAATTGTCTATGTTGCAC CCATGAAAGCCCTTGTTGCTGAAGTTGTAGGTAATTTGTCTAATCGTCTGAAGGATTATGGAGTTATTGTGAGAGAACTCAGTGGGGATCAGTCCCTAAC CGGAAGAGAAATTGAAGAGACTCAGATAATTGTTACAACACCAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGACCGAACTTATACTCAGCTTGTG AGACTTCTTATAATTGATGAAATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAAAGCATTGTTGCTAGGACTCTTAGGCAAATTGAAACCACGA AAGAGAATATTCGTCTGGTTGGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTTAAGAAAGGTTTGTTTAAATT TGACCGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTATATTGGAATCAGTGTGAAGAAACCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTAT CAGAAAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTATTTTTGTTCATTCAAGGAAGGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAA TGGCGAACGATACCCTCAGCAGATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACATTGTTAAGAATAGTGACCTAAAAGA TATTCTGCCTTACGGTTTTGCAATTCATCATGCTGGGTTATCAAGGGGTGATCGTGAGATTGTTGAGACTCTTTTTTCTCAGGGGCATGTGCAAGTCTTG GTTTCCACAGCAACTCTCGCATGGGGTGTGAATCTGCCTGCACATACCGTAATTATAAAAGGAACCCAGGTGTATAATCCTGAAAAAGGGGCGTGGATGG AGCTGAGTCCTCTAGATGTTATGCAGATGCTTGGTCGTGCTGGAAGACCTCAGTATGATCAACATGGGGAGGGTATAATTATAACTGGCTACAGCGAGCT GCAATATTATCTTTCTTTGATGAATGAGCAACTACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTTAATGCTGAAATTGTGCTTGGAACC GTTCAGAATGCTAGAGAGGCTTGCCATTGGCTTGGTTACACGTATTTGTATATCCGTATGGTTCGTAATCCAACGTTGTATGGCTTAGCGCCTGATGCCC TTGCAAAAGACGTAGTTTTGGAGGAGAGAAGAGCTGACCTGgtacggaatttgttcatctgcataaattttggcttttgctatctactgtcacattattt ttctatagttaaatgcccataaatactatgcctagtatctgaagctttcatacagcctactattatgcagcctgtgattaattgtgcgtattttttatca ctgctctgaaagttacttttatttgtgttaatattcttagtgaagagtttgtaacgctctttcatatagtatcattgcccctaaatattatgcctagcat cagtagctttgcctccgtgattaactgttgggatcacttgtgcatcatcatgtactgttgggatcacttgtgcatcatcatgttgattactaatctagta acagaaatttctttttgagtattttgaatggggagtatgtacctgattatttaattttatttctctgaaaatgacgtttatttatttgatatcatttccc ataaataatgttcctagtgtcagtagctttctcactgtctattacatgcaatcaatgatgaactgtttggtgtttgccttgtcttcttcaagttgatgac agattagtatttcatatatctttttgagatttccgaacaatgagtttgcattcggttatgtaatatcattgttctaaagtttcatatatcattgatcctt taatggcgagctgtgtctaatatttgcttgaatccttgtttttgcagATACATTCGGCTGCTACTATCTTGGACAAAAACAACTTGGTTAAGTATGACAG GAAAAGTGGATACTTCCAAGTTACAGATTTGGGACGCATAGCAAGCTACTATTACATAACCCATGGGACCATAGCTACATACAATGAGCATTTGAAGCCA ACAATGGGTGATATAGATCTTTATCGTCTGTTCTCCCTGAGTGACGAGTTCAAGTATGTGACTGTTCGGCAAGATGAGAAGATGGAACTGGCGAAACTTT TGGATCGTGTCCCAATTCCGATCAAGGAAACTTTGGAGGAGCCCAGTGCCAAAATAAATGTATTGCTGCAGGCATATATTTCACAGCTAAAGCTTGAGGG TCTTTCTTTGACATCTGACATGGTTTACATTACGCAGgtttgttctacactttcttctctcgtcccttctagttacattgataaattagctgtatctatt ttctgatacttatatttcgttcctttctatcatttttagAGTGCTGGACGTCTTGTGCGAGCTCTTTATGAAATTGTATTGAAGCGGGGATGGGCTCAAT TGGCAGAGAAGGCTCTGAACTTGTCTAAAATGGTAGGGAAGAGGATGTGGAGTGTTCAGACACCCCTGCGTCAGTTTCATGGACTCTCCAATGATATTTT GATGCAGTTGGAGAAGAAGGATTTGGTGTGGGAGAGGTACTATGATCTATCCGCACAGGAGCTAGGAGAGCTTATTCGCAGTCCTAAGATGGGCAAGCCG CTTCACAAGTTCATTCACCAGTTCCCAAAAGTGACTCTTTCTGCACATGTTCAGCCTATTACTCGCACTGTTCTGAATGTGGAGCTTACAGTTACACCTG ATTTCCTGTGGGACGAGAAAATTCATAAATATGTTGAGCCGTTTTGGATAATTGTGGAAGACAATGATGGTGAAAAGATCCTTCATCACGAGTATTTTCT TTTGAAGAAGCAGTATATTGATGAGGATCACACTTTGCACTTCACTGTGCCAATTTTTGAACCGTTGCCACCTCAGTATTTTGTTCGAGTGGTTTCAGAC AAGTGGCTTGGCTCGGAGACTGTGTTGCCTGTATCTTTCAGGCATCTTATTCTTCCAGAGAAGTATCCACCTCCGACAGAGTTACTGGACTTGCAACCTC TCCCAGTGACGGCGCTAAGGAATCCGAATTATGAGATACTCTATCAGGATTTCAAGCATTTCAATCCAGTGCAGACTCAGGTCTTTACTGTTTTGTATAA CACTAACGACAATGTGTTGGTTGCTGCTCCAACGGGAAGTGGGAAAACTATTTGTGCGGAGTTCGCTATTTTGAGGAATCATCATGAAGGACCTGATGCT ACAATGCGTGTTGTTTATATTGCACCACTTGAGGCTATTGCCAAGGAGCAGTTTCGTATCTGGGAGGGGAAGTTTGGGAAGGGTCTTGGTTTACGGGTTG TTGAGCTAACTGGGGAGACAGCATTGGATCTTAAGCTGCTTGAGAAAGGCCAGATAATCATAAGTACTCCTGAGAAATGGGATGCTCTTTCCCGCAGGTG GAAACAGAGAAAATATGTTCAACAAGTTAGTCTTTTCATCGTCGACGAACTCCATCTAATTGGAGGTCAACATGGTCCAGTGTTGGAGGTAATCGTTTCC AGAATGAGATATATTTCAAGTCAGGTCATTAATAAGATCAGGATTGTTGCGCTATCCACTTCGCTTGCAAATGCAAAAGATCTTGGGGAGTGGATTGGGG CCAGTTCCCACGGCCTTTTCAACTTCCCTCCCGGAGTCCGTCCTGTTCCACTGGAGATCCACATTCAGGGAGTGGATATATCCAGTTTTGAAGCCAGGAT GCAGGCGATGACCAAACCAACCTACACCGCCATAGTTCAGCACGCCAAGAACAAGAAGCCGGCTATTGTTTTCGTCCCAACCCGTAAACATGTCCGCTTG ACTGCTGTGGATCTGATGGCTTATTCTCACATGGATAACCCGCAGAGTCCTGATTTCTTGTTAGGGAAGCTGGAAGAACTGGACCCTTTTGTTGAACAAA TCCGCGAGGAAACACTGAAGGAGACACTGTGTCATGGTATTGGATACTTGCATGAGGGTTTAAGCAGTCTGGATCAGGAGATTGTGACACAGCTCTTTGA AGCTGGACGGATTCAGGTTTGTGTGATGAGCAGTTCATTGTGTTGGGGCACTCCATTAACTGCGCATTTGGTGGTCGTAATGGGAACGCAGTATTACGAT GGGAGGGAAAATTCACATTCTGATTATCCAGTCCCTGATCTGCTTCAGATGATGGGGCGTGCTAGCCGACCACTTCTTGACAATGCCGGGAAGTGTGTGA TCTTTTGTCATGCACCGCGGAAGGAGTATTACAAGAAGTTTTTGTACGAAGCCTTCCCTGTGGAAAGTCAGCTCCAGCATTTCTTGCATGATAATTTCAA CGCAGAAGTGGTTGCTGGGGTTATAGAGAACAAGCAAGATGCCGTGGATTATCTTACATGGACTTTCATGTACAGGAGGCTTCCCCAGAACCCTAACTAC TACAATCTCCAAGGTGTTAGCCACAGGCATTTGTCTGATCACCTATCAGAGCTGGTTGAGAACACCTTGTCTGATCTTGAAGCCAGTAAATGCATTGAGG TAGAGGATGAGATGGAACTCTCTCCTCTCAACCTTGGTATGATTGCATCCTATTATTACATCAGTTATACCACCATTGAGCGCTTCAGTTCACTGTTGTC TTCTAAAACCAAGATGAAGGGACTTCTTGAAATCTTAACATCGGCTTCAGAGTATGACATGATTCCTATACGGCCTGGCGAAGAGGACACCGTTCGAAGA TTAATCAATCACCAGAGGTTCTCTTTTGAAAACCCAAAATGCACAGACCCTCATGTGAAGGCAAACGCGCTTCTTCAGGCGCATTTCTCAAGGCAAAACA TTGGCGGGAACTTGGCAATGGATCAGCGTGATGTCCTTCTATCTGCAACCAGACTTCTTCAAGCGATGGTCGATGTGATATCAAGCAATGGCTGGCTGAA TCTTGCTCTGCTAGCTATGGAAGTAAGCCAGATGGTGACTCAAGGCATGTGGGAGCGGGACTCCATGCTTCTGCAGCTCCCTCACTTCACAAAAGACTTG GCCAAGAGGTGCCAGGAGAATCCAGGGAAAAACATTGAAACCGTATTCGATCTTGTGGAGATGGAGGATGAAGAACGCCAAGAGCTTCTCAAGATGTCAG ACGCTCAGCTTCTAGACATTGCCAGATTCTGCAACCGCTTCCCAAACATCGACCTTACTTACGAGATTGTGGGCAGTGAAGAGGTGAACCCAGGGAAAGA GGTTACATTGCAAGTGATGCTTGAGAGAGACATGGAGGGGAGGACAGAAGTGGGACCTGTGGATTCACTGAGGTATCCCAAGACCAAAGAAGAAGGATGG TGGCTGGTCGTGGGCGACACCAAGACAAACCAGTTGCTGGCAATCAAGCGTGTCTCATTGCAACGGAAAGTGAAGGTGAAGCTGGATTTCACAGCACCGA GTGAACCAGGAGAGAAGTCATACACACTATACTTCATGTGTGACTCTTACTTGGGGTGTGACCAAGAGTACTCGTTCTCTGTTGATGTCAAAGGATCCGG CGCTGGAGATCGCATGGAAGAATGAtttgttattcaggttagttccacagttttctggtcatagttttcggatttagattctgtacatggttgtagtttt tgtgttacgaacttggctttactagattctgctatgtgcattgaccaactcgctttcatctattgtttgagtaatttgttcatcaatctgctatttttct gtttcgtctgttttctttttgcatgagctatgtattaggttttactcttgagcattgatttacttatctaggtattagaatacaggtatgctcatggtat atatatacctagtattgtgaaatgattgattgataagttagtgaacaatgttgatcagcaaattgttagaaatctgtataattggatggtgatttgatgt gtgctttggatggtgatttgatatgtgtgcatcactgctatatgaaaactgctttcttgaatcatgtctcataaaaatctcacatgatgttcctttaaaa tagc
Border_1 (26145_LBD)
CAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTC
CGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACGCAGCAGAAACTTGACAAGGCTAAATTTTTCGTACTGAAGGTGCATAAGCAGCTTGTCC
TCAACAACCCTATCATCCCCTTCAGCGAGTATCTTTAGTAGCTCTTCTGCGAGTACCTGGCATTGTTGTGGATCAATCTGCTGTTCATACGCTTGAGAGA
TCTTTCTCTGGAGCCAATATGCATCAATGTCTTGAACATTAAGATTTGTGCCCTCATTGGCATCTCCTGCATCCTCATCATTTATCCCTGCATCAACCTG
CATGCCTCCAGTTCTGGTAGGCTCATCATCCTCCTCATCATCATCCTCTTCAACCATATCAGGATCGCTTTCCTCATCATCTTCTTCATTCTCCTCAAAT
TCAACAGGCCACGCCCAATCATCATCAAGCCCCTTCATCATCATTTAGCTCTACCACCACCAGAATCACCACCCTTCTTGGAAGTCCGGGATTAACTTTC
CAATGGAAAACAAGGCTGATCAAACTCATGGGTTTCAATTCTTGGTTCAGCAAACTTTCTCAATCTTCCAT
| Start of BLAST Alignment: | NT 1023 / Exon 1 of 3 |
| First 15 bp Perfect Match: | NT 1010 / Exon 1 of 3 |
BLAST Details: Query Sequence: 26145_LBD Length: (671 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein... 2439 1.2e-104 1 At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein... 1291 1.4e-52 1 At5g42280 68418.t04790 DC1 domain-containing protein cont... 344 6.7e-08 1 At5g07170 68418.t00743 hypothetical protein 328 5.3e-07 1 Warning: Descriptions of 40 database sequences were not reported due to the limiting value of parameter V = 100. >At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein helicase, putative similar to SP|O75643 U5 small nuclear ribonucleoprotein 200 kDa helicase {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF02889: Sec63 domain Length = 7324 Minus Strand HSPs: Score = 2439 (372.0 bits), Expect = 1.2e-104, P = 1.2e-104 Identities = 515/534 (96%), Positives = 515/534 (96%), Strand = Minus / Plus Query: 657 AAGTTTGCTGAACCAAGAATTGAAACCCATGAGTTTGATCAGCCTTGTTTTCCATTGGAA 598 ||||| ||||||| |||| |||||| ||||||||||||||||| |||||| ||||||||| Sbjct: 499 AAGTT-GCTGAAC-AAGA-TTGAAAACCATGAGTTTGATCAGC-TTGTTT-CCATTGGAA 553 Query: 597 AGTTAATCCCGGACTTCCAAGAAGGGTGGTGATTCTGGTGGTGGTAGAGCTAAATGATGA 538 |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct: 554 AGTTAATCACGGACTTCCAAGA-GGGTGGTGATTCTGGTGGTGGTAGAGCTAA-TGATGA 611 Query: 537 TGAAGGGGCTTGATGATGATT-GGGCGTGGCCTGTTGAATTTGAGGAGAATGAAGAAGAT 479 ||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 612 TGAAGGG-CTTGATGATGATTTGGGCGTGGC-TGTTGAATTTGAGGAGAATGAAGAAGAT 669 Query: 478 GATGAGGAAAGCGATCCTGATATGGTTGAAGAGGATGATGATGAGGAGGATGATGAGCCT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 GATGAGGAAAGCGATCCTGATATGGTTGAAGAGGATGATGATGAGGAGGATGATGAGCCT 729 Query: 418 ACCAGAACTGGAGGCATGCAGGTTGATGCAGGGATAAATGATGAGGATGCAGGAGATGCC 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 ACCAGAACTGGAGGCATGCAGGTTGATGCAGGGATAAATGATGAGGATGCAGGAGATGCC 789 Query: 358 AATGAGGGCACAAATCTTAATGTTCAAGACATTGATGCATATTGGCTCCAGAGAAAGATC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 790 AATGAGGGCACAAATCTTAATGTTCAAGACATTGATGCATATTGGCTCCAGAGAAAGATC 849 Query: 298 TCTCAAGCGTATGAACAGCAGATTGATCCACAACAATGCCAGGTACTCGCAGAAGAGCTA 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 TCTCAAGCGTATGAACAGCAGATTGATCCACAACAATGCCAGGTACTCGCAGAAGAGCTA 909 Query: 238 CTAAAGATACTCGCTGAAGGGGATGATAGGGTTGTTGAGGACAAGCTGCTTATGCACCTT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 910 CTAAAGATACTCGCTGAAGGGGATGATAGGGTTGTTGAGGACAAGCTGCTTATGCACCTT 969 Query: 178 CAGTACGAAAAATTTAGCCTTGTCAAGTTTCTGCTGCGTAAACAAATTGACGCT 125 ||||||||||||||||||||||||||||||||||||||||| | || | | | Sbjct: 970 CAGTACGAAAAATTTAGCCTTGTCAAGTTTCTGCTGCGTAACCGTCTTAAAGTT 1023 >At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein helicase, putative Length = 7004 Minus Strand HSPs: Score = 1291 (199.8 bits), Expect = 1.4e-52, P = 1.4e-52 Identities = 373/494 (75%), Positives = 373/494 (75%), Strand = Minus / Plus
Border_2 (26145_RBU)
AATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCGCGCAATTACCCCTC:CTAAAGGRACCAAAAGCTGGAGCTC
GTTTGASCTTGRATCAAATTGCCGTTCCCCGCCTTAAGTTAAAMCTATAAGTTGTGTGGTGCACTCGTTTGGCTAGGCCAGAAGACCAGGAAAAGAGGAN
TAAAATCGNGGNGGAGANGAGGGGGTTAGCCCCAAANTTGNCAGCANTNGGGGACCAGTNGCATSCACCANGASCACCAGGAAANGAGAGGGAGGAAACC
CTGNAAAAAAGTATTACCGAGGAACCCCGGCNTTNNAAGGACAAAMCTGGGGNAAATGGAGGCANAGCCAGGAAAAATCTTGTTAANAAAAATTNAAANA
GGGGGNGGGNAAAGGGTNASCGCCAAATNCTGANCCTGAAAAGNTTGGTTTTNNACCAAGGNGCTTTTYTAANGGAAAAAAAAAAGGGCNCCCNCCCCCN
TGCTTNTNNCAAAAGTC
| Start of BLAST Alignment: | NT 1014 / Exon 1 of 3 |
| First 15 bp Perfect Match: | NT 1018 / Exon 1 of 3 |
BLAST Details: Query Sequence: 26145_RBU Length: (516 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein... 1109 2.5e-44 1 At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein... 632 9.8e-23 1 >At1g20960 68414.t02350 U5 small nuclear ribonucleoprotein helicase, putative similar to SP|O75643 U5 small nuclear ribonucleoprotein 200 kDa helicase {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF02889: Sec63 domain Length = 7324 Plus Strand HSPs: Score = 1109 (172.4 bits), Expect = 2.5e-44, P = 2.5e-44 Identities = 276/373 (73%), Positives = 281/373 (75%), Strand = Plus / Plus Query: 144 CTATAAGTTGTGTGGTGCACTCGTTTGGCTAGGCCAGAAGACCAGGAAAAGAGGANTAAA 203 || ||||||||||||||||||||||||||||| |||||||||||||| |||||| || | Sbjct: 1015 CTTAAAGTTGTGTGGTGCACTCGTTTGGCTAGGGCAGAAGACCAGGAAGAGAGGAATAGA 1074 Query: 204 ATCGNGGNGGAGANGAGGGGGTTAGCCCCAAANTTGNCAGCANTNGGGGACCAGTNGCAT 263 |||| || ||||| ||||||||||| |||| | ||| ||||| | | ||| |||| |||| Sbjct: 1075 ATCGAGGAGGAGATGAGGGGGTTAGGCCCAGAGTTGACAGCAATTGTGGAGCAGTTGCAT 1134 Query: 264 SCACCANGASCACCAGGAAANGAGAGGGAGGAAACCCTGNAAAAAAGTATTACCGAGGAA 323 +|| || ||+|| ||| || ||||||||||| | |||| |||||||||||| ||||||| Sbjct: 1135 GCAACAAGAGCAACAGCGAAAGAGAGGGAGGAGAACCTGCAAAAAAGTATTAACGAGGAA 1194 Query: 324 CCCCGGCNTTNNAAGGACAAAMCTGGGGNAAATGGAGGCANAGCCAGGAAAAATCTTGTT 383 |||||| || |||||| ||+|||| | | ||||||||| || ||||| | || ||| | Sbjct: 1195 GCCCGGCGTTTGAAGGACGAAACTGGTGGAGATGGAGGCAGAGGCAGGAGAGATGTTGCT 1254 Query: 384 AANAAAAATTNAAANAGGGGGNGGGNAAAGGGTNASCGCCAAATNCTGANCCTGAAAAGN 443 | | | ||| | | || ||| ||| |||||| |+|| || || ||| |||| | || Sbjct: 1255 GATAGAGATTCAGAGAGTGGGTGGGTGAAGGGTCAGCGTCAGATGCTGGACCTGGAGAGC 1314 Query: 444 TTGGTTTTNNACCAAGGNGCTTTTYTAANGGNNNNNNNNNNGGGCNCCCNCCCCCNTGCT 503 |||| ||| ||||||| | | ||+| | || | | || ||||| || Sbjct: 1315 TTGGCTTTTGACCAAGGTGGTCTTCTGATGGCGAATAAGAAGTGTGACCTCCCCCCTGGC 1374 Query: 504 TNTNNCAAAAGTC 516 | | || ||||| Sbjct: 1375 TCTTACAGAAGTC 1387 >At2g42270 68415.t04797 U5 small nuclear ribonucleoprotein helicase, putative Length = 7004 Plus Strand HSPs: Score = 632 (100.9 bits), Expect = 9.8e-23, P = 9.8e-23 Identities = 209/326 (64%), Positives = 212/326 (65%), Strand = Plus / Plus