At3g60740 SYNGENTA 29862
Genomic Sequence (from TAIR)
tactaccattttttgttctttggatattccgccataatgaaataggataaaatatcttttttaaaatgaggtacgacaaaaaaaaagttatttttaagga aatgtttgcttattcttgaatatacaaaaccagaaagagattcaagtatcaagcctaccaactctggttaagccggtttataaaagcacccaaagatgga aaatctagaccaacgaagctacattgaggaaggttataggcccaaaataggaacatgggtatataggcccaataaattactatgggccttaacatgtaaa ctcatcgtcgacgtcaccgatctcgtgatttgccggtggttctacactgagagtattatcggcgggcgggaatttattgaacccctttctctttccagta ATGGCATCTAGAGCAGAGGAAATGTCGCCGACGAAGATCGAAATCGAAACGGCGGTAAAAATTGAAGAGGAAGAAGACGATGAGCATGATTCTAAGGAGA GAGTTCTACAGAGGTATTTTTTACAAGAATGGAAGCTCGTTAAATCTCTTCTCGATGATATTGTTTCAAATGGCCGTGTTGTTGATCCTACTTCTGTTCA TAAGATCCGATCCATTgtacgcttcttagtcttttgacttcatctacttgatccaacccatgtttcagtatcatgttgatttactttctccgactttgtt ttgttgtattgtagATGGATAAATACCAGGAGCAAGGTCAATTAGTGGAACCTTACTTAGAGAGTATAGTTTCTCCATTAATGTTTATCATCCGCTCCAA AACAGTTGATTTAGAGGCCAAACCTGATGAAATTCTTGA◄GATTATTAAGCCAATAAGCATCA►TTATCTATGCTTTAGTTACTGTATGTGGGTACAAAG CTGTTATCAAGTTCTTTCCGCATCAAGTATCCGATCTGGAACTCGCCGTTTTGCTCCTCGAGAAGTGCCATAGTACAAATTCTGTTTCTGCCTTGAGGCA AGAAAGCACTGGAGAAATGGAGGCCAAATGTGTTACTCTTTTGTGGCTTTCAATCCTTGTGTTGGTTCCGTTTGATATTTCTTCTGTTGATACAAGCATT GCTGATGACAAGACCTTTGGTGTGGATGACCTTGCTCCTTTGGTATTGAAGATATTAGGTTTCTGTAAGGACTATCTGTGCAGTGCTGGACCAATGCGCA GGATATCGAGGTTGCTACTCTCTAAGCTTTTAACTCGTCCGGATATGGGAAAAGCTTTTTCGAGgtctgttcctaccaccatcagtgcttcagtgttgtt tcactttgaacacttaagattgtttctaaactgctgttttcaattgtaacatgtacaatttactcaccgtgaatggattaactaattttctttattctat tgtggcatttccgtttcagCTTTTTTGAGTGGACATATGAAGTTTTGTCTTGTAAGGAAGATAGTGTCACGAACCACTTTCGCTTGCTTGGTGTAATGGA AGCTCTATCTGCCATTTTTAAGgtttattctgtttgtaacctggaattctctttgttttaactttggtccatacttaacacgtcaaacatatatagatgt ctgtaaagtacataatcaatttgacttatctgttttgtatcttgtagaaatattactggtttctattacttaacctgttccaatttgcatctggatctaa tatgtctactcatgttggcagACTGCTAGCCGGAAAGTGTTGCTAGATGTGCTTCCTATTGTTTTGAATGATGTGACTGTGCTAAGCAAATCAAACGCGG CGGCTAAAAGTTCTCTGCTTCGCAAGTATTTGATCAAGTTAACTCAGAGGATAGGGCTTGTTTGTCTTCCTCATCGCTCACCTTCCTGGCGCTATGTGgt acataccttttagcttgtagaatagtagtgcaaagaggaactcttcctcgtcatgtgtttttatatttttactctatgaataatgtcaatattgacataa tgtttggtagtcattttctgttagtcatccgagacttatttattgaattacctgcagGCTCAAACCGCCTCTCTTTCTGAGAATATGTCTACGAGTTCAT CTCAAAGATTGGCGCCTGATCATACTGTGACTGCCATCTTACAACCAGAAAGTTTGGATGATCAAGAGGATGAAGATATGGATGTTCCAGAAATCTTAGA AGAGATTATTGAAATGCTACTATCTGGTTTGAGGGACACGgtatgtttaaagggtgagatactactgttaggctgataactttaggtggttatctctaaa cttatacgaatagatgcccacacaataatttgagtataagtaggctgctttatattaagttgtagactcgagtaaccagatagtacttaaacagatcttg aatgttatacatatctgagatggcacgtaaagctgtgatggcctgaattaatatcttatgtgaactttccgcctcttgaaactttcagctgccaaccaga caatcgcacatgttactagtatctgcaagcattgtccttttgaaatttattattttctgaactgtgtagGACACCGTGGTTCGTTGGTCTGCTGCAAAGG GTATAGGTCGTGTTACTTCACGTCTAACATCTGTTCTGTCTGATGAGGTGTTGTCATCTGTATTGGAGCTTTTTTCACCAGGAGAGgtactcgttgtgga tatggcagcatggcttgcgtgtacttaaatccaattaaaagcatgcattatctagctgacagttattgtggttttcatggcattcagGGAGATGGTTCAT GGCATGGGGGTTGTTTGGCCTTAGCTGAACTGGCTCGTAGAGGGTTACTTTTGCCTAGAAGTTTTCCACTAGTCGTCCCAGTTATTGTGAAGgtcgtact ctatttcatgcacatgaatacttatatctatagtcatcgcatacgaagaaatggcatcacccacccacaatagtgcagaagttctgtggatttacatcta aatttcatttacagGCACTCCATTATGATGTTCGCCGAGGTCCACACAGTGTTGGATCTCATGTGCGTGATGCAGCTGCCTATGTTTGTTGGGCATTTGG GCGCGCCTATTCCCACAAAGATATGAAAAACGTGCTGGATCAGCTTGCTCCAGATTTATTGATAGTGGGTTCCTTTGATAGAGAGgtactaatccctctt ttgactataattttttcgccgtttcttgctttattttgaagttctctttattgcgtataatttatttatttcttttgtcagGTGAACTGTAGAAGGGCTG CTGCCGCTGCTTTCCAAGAGAATGTTGGAAGACAAGGAAATTACCCTCATGGGATTGACATAGTGAGCATAGCTGATTATTTTTCCCTATCTTCTCGGGT GAACTCTTACCTTCAGGTTGCTGTTTCCATTGCTCAATATGAAGGATATCTATATCCTTTTGTGGATGAATTGCTATACAACAAGATCTGCCACTGGgta tgcttatcttaaacactgtttgatatttggtttatctctgatttatctgcaaatctaatatctctttaatgccctgcttgtatttactgtgggaacggtt taagtgttcaacaactaatttcaaaattcaacaacccatgaactagagccaatagcttgattgggaactgtatcatataacttttataatatgttaatta ttcaatattgtgatatcagGATAAAAGCTTGAGAGAACTTGCTGCAGAAGCTCTTGCTCCTCTTGTTAAGTACGAGCCTAAGCACTTTGCCAACTATGTG CTGGAGAAACTAATTCCTTGTACCCTTTCAACTGATTTGTGCATGCGCCATGGTGCAACATTGGCAGCTGGAGAGGTTGTGTTAGCTCTGCACCAGTGTG GCTATGTCCTTTCTGCTGgttagtaccatctattttttcagctttggcttttgtggcacctttgcatatggaaagtcaaaaatatgggcaccatcttgga atctagactttgtaagcggatttttaatcagatgaaaaattaacagagtttgatggttggcatcgttatcccttatatttaaggttcatgttgcactcaa tttttacagATAGCCAAAAGCGTATGGCTGGTATTGTTCCTTCCATTGAGAAAGCACGCCTTTACCGTGGAAAAGGTGGAGAAATAATGCGACTGGCTGT CTCACGATTTATCGAGTGTATTTCGTTATCGCATGTGACTTTAGCTGAAAGAACAGAACGGATCTTGCTTGATACTCTCACTGAGAATTTAAGACATCCC AATTCTCAAATACAGgtacctatctttctaaaagtcatgaagttattctcatcctattagcagaattcaatagttgacaagtttcacttattatacagAA TGCAGCTGTCAGTGCTGTTAAACAGCTTGTGCAATCTTATCTCGTTGGCAATGATAAGAAATCTGTTGATTTAATATTAAAACACCTAAAACATCTAACG GACCCAAATGTAGCTGTCCGAAGAGGTTCTGCACTTGCACTAGGTGTCTTGCCATATGAACTATTGACTGCAAAATGGAAGGATATAGTTTTGAAGCTCT GCAGTGCGTGTAAGATAGAGgtaatgaagactatatttgacttcattacagaatgatataattaactttggaaaacagaatgaaataattgatttgatgg atgtttttcttccaagcagGTGAACCCTGAAGACAGAGATGCAGAGGCACGTGTGAATGCTGTAAAAGGACTCACATCCGTGTGTGAGACTCTTACTCAG AAAAGGGCTAGCGATCCTGGAAATGATGACCTGTCTCTTTTTCTTCTTATCAAGACTGAAGTGATGGATACTTTACTGAAAGCTCTTGATGACTATTCAG TTGATAACCGAGGTGATGTAGGTTCTTGGGTTCGTGAAGCTGCAGTCCATGGTCTTGAGAAGTGTACATATATCCTCTGTAAGAAAATGGAAACATATTC AGAGGGTGATTATAACGATGATACGTCCTCACTTTTCGATTCGAATCTTGCGACCCGTCTAATTGGAGGTATGCTGAAGCAAGGAGTGGAGAAAATGGAT AAATTAAGAGAAACAGCTGCAAAGGTTCTTCAAAGGATTTTGTATCACAAATCTGTTTCCGTCCCTCATGTACCTTATAGAGAAAAACTGGAAGAAATTC TTCCCAACAAGGCAAACTTACAATGGGCGgtaagctgatcctggagacttggttgcttcatcgattatttgatggaatttcttatctgactataaattat atatcttcctttatagGTTCCGGCTTTCTCTTTCCCACGGTTTGTGCAGCTTTTGAAACTCCGTTGTTACAGCAAAGAGGTGATGTCTGGATTAGTAATT TCAATTGGAGGATTACAAGATTCACTTAGAAAGGCTTCTCTCGTTGCATTGTTGGAGTATATGAGGGAAGGTGAAGCTAAAGACCCTAAAGAACAACAAT CCAGAGAGTCTGCCCTGGGAGATGACATTCTCTGGATACTTCAAGAGTACAAGAAATGTGACAGAGTTATGGTACCCTGTCTACAGgtaaaaactccccg tcttaacctctacttccatgttgttatgtcttaacttctctcttttacacagACAATTGAGATCCTCTTCAGCAGCAAGATCTTTCTGAATCAAGAGgtt ggtttaaaattgccaaaggttatagattgattctaaacacattccatacaaagctaatctgtcatcattttatttcagTCGTATACGTTTAGTTTCTACG CGGGTGTCATGGATTCTCTAGCCATCGAACTAAGAGCTTCTAAGGATTTCACAAAGTTAAAAGCAGGCCTTGCAATACTTGGATATATTGCTTCAGTCTC GCATTTCATCAGCACAAAAGCATTCTCTCAACTTCTATCATTCCTTGGCCACCGATACCCAATGgttcttgtcacttcaatatgaaacacaattctacct aaatcttaaaagcattttggtttactcgacattttcttttcacatgatccagATCCGAAAGGCGGCAGCGGAACAAGTCTATCTTGCGCTACTTCAAAAC GGAATCTTAGTGACAGAGGAGAAGATGGAGAAAGTGATAGAGATAATTTCAGAATCTTGTTGGGAAGCAGACATGGAAACGACTAAGACTCAGAGGTTAG AATTGTGCGAGTTGGCTGGTTTAGACCATGAAGTAGTGTTCAAGACCAGAAACAGATTGGTGATTAAGGATATAGCCGGAAATAAATCGGCTGCTGACGA AAATGCGTCTTACTCTTCATTGGTCGACTCCTCTGGCTTCTGAttttacgcattgtcctggagtcagtttttgtctcttgttcttcgtagtacacttata tgtgctaaattattatccatcatacttctagttttgctagggtttggtaatattcttaaatatgttatattgtgttgatgatttattcattcaaaagtga ctcaaaccccagctgaaaacggcacaccggtgatagggatccaagaatctccttgtatgaatcggctgacggtaaacggagaagcctcttcctcaccgcg taggacgtgaaatcccggccagttcacccttctaccagtccctgctccagctccggtgttcataaactcgccgtaatacaacgtcgacaaagcataactg ccactccattctctccaccctctcgggtcaatcaactcgtcgatatctgttttgagaaacactgtccgtgagtacttcttccatggccggcccaagtagc tc
Border_1 (29862_LB2U)
TCAAGAATTTCATCAGGTTTGGCCTCTAAATCAACTGTTTTGGAGCGGATGATAAACATTAATGGAGAAACTATACTCTCTAAGTAAGGTTCCACCTAAT
TGACCTTGCTCCTGGTATTTATCCATCTACAATACAACAAAACAAAGTCGGAGAAAGTAAATCAACATGATACTGAAACATGGGTTGGATCAAGTAGATG
AAGTCAAAAGACTAAGAAGCGTACAATGGATCGGATCTTATGAACAGAAGTAGGATCAACAACACGGCCATTTGAAACAATATCATCGAGAAGAGATTTA
ACGAGCTTCCATTCTTGTAAAAAATACCTCTGTAGAACTCTCTCCTTAGAATCATGCTCATCGTCTTCTTCCTCTTCAATTTTTACCGCCGTTTCGATTT
CGATCTTCGTCGGCGACATTTCCTCTGCTCTAGATGCCATTACTGGAAAGAGAAAGGGGTTCAATAAATTCCSGCCC
| Start of BLAST Alignment: | NT 439 / Exon 2 of 17 |
| First 15 bp Perfect Match: | NT 439 / Exon 2 of 17 |
BLAST Details: Query Sequence: 29862_LB2U Length: (477 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g60740 68416.t06280 tubulin folding cofactor D identic... 2366 1.8e-101 1 At5g55990 68418.t06484 calcineurin B-like protein 2 (CBL2... 200 0.34 1 At1g58602 68414.t06096 disease resistance protein (CC-NBS... 183 0.97 1 At4g07960 68417.t01217 glycosyl transferase family 2 prot... 177 0.998 1 >At3g60740 68416.t06280 tubulin folding cofactor D identical to tubulin folding cofactor D GI:20514263 from [Arabidopsis thaliana] Length = 6096 Minus Strand HSPs: Score = 2366 (361.0 bits), Expect = 1.8e-101, P = 1.8e-101 Identities = 475/477 (99%), Positives = 476/477 (99%), Strand = Minus / Plus Query: 477 GGGCSGGAATTTATTGAACCCCTTTCTCTTTCCAGTAATGGCATCTAGAGCAGAGGAAAT 418 ||||+||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 GGGCGGGAATTTATTGAACCCCTTTCTCTTTCCAGTAATGGCATCTAGAGCAGAGGAAAT 62 Query: 417 GTCGCCGACGAAGATCGAAATCGAAACGGCGGTAAAAATTGAAGAGGAAGAAGACGATGA 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 GTCGCCGACGAAGATCGAAATCGAAACGGCGGTAAAAATTGAAGAGGAAGAAGACGATGA 122 Query: 357 GCATGATTCTAAGGAGAGAGTTCTACAGAGGTATTTTTTACAAGAATGGAAGCTCGTTAA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 GCATGATTCTAAGGAGAGAGTTCTACAGAGGTATTTTTTACAAGAATGGAAGCTCGTTAA 182 Query: 297 ATCTCTTCTCGATGATATTGTTTCAAATGGCCGTGTTGTTGATCCTACTTCTGTTCATAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 ATCTCTTCTCGATGATATTGTTTCAAATGGCCGTGTTGTTGATCCTACTTCTGTTCATAA 242 Query: 237 GATCCGATCCATTGTACGCTTCTTAGTCTTTTGACTTCATCTACTTGATCCAACCCATGT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 GATCCGATCCATTGTACGCTTCTTAGTCTTTTGACTTCATCTACTTGATCCAACCCATGT 302 Query: 177 TTCAGTATCATGTTGATTTACTTTCTCCGACTTTGTTTTGTTGTATTGTAGATGGATAAA 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 TTCAGTATCATGTTGATTTACTTTCTCCGACTTTGTTTTGTTGTATTGTAGATGGATAAA 362 Query: 117 TACCAGGAGCAAGGTCAATTAGGTGGAACCTTACTTAGAGAGTATAGTTTCTCCATTAAT 58 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 363 TACCAGGAGCAAGGTCAATTAG-TGGAACCTTACTTAGAGAGTATAGTTTCTCCATTAAT 421 Query: 57 GTTTATCATCCGCTCCAAAACAGTTGATTTAGAGGCCAAACCTGATGAAATTCTTGA 1 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 GTTTATCATCCGCTCCAAAACAGTTGATTTAGAGGCCAAACCTGATGAAATTCTTGA 478 >At5g55990 68418.t06484 calcineurin B-like protein 2 (CBL2) identical to calcineurin B-like protein 2 GI:3309084 from [Arabidopsis thaliana] Length = 2404 Minus Strand HSPs: Score = 200 (36.1 bits), Expect = 0.42, P = 0.34 Identities = 150/247 (60%), Positives = 150/247 (60%), Strand = Minus / Plus
Border_2 (29862_LB1D)
AATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTATCTATGCTTTAGTTACTGTATGTGGGTACAAAGCTGTTATCA
AGTTCTTTCCGCATCAAGTATCCGATCTGGAACTCGCCGTTTTGCTCCTCGAGAAGTGCCATAGTACAAATTCTGTTTCTGCCTTGAGGCAAGAAAGCAC
TGGAGAAATGGAGGCCAAATGTGTTACTCTTTTGTGGCTTTCAATCCTTGTGTTGGTTCCGTTTGATATTTCTTCTGTTGATACAAGCATTGCTGATGAC
AAGACCTTTGGTGTGGATGACCTTGCTCCTTTGGTATTGAAGATATTAGGTTTCTGTAAGGACTATCTGTGCAGTGCTGGACCAATGCGCAGGATATCGG
GGTTGCTACTCTCTAAGCTTTTAACTCGTCCGGATATGGGAAAAGCTTTTTCGAGGGTCTGTTCCTACCACCATCAGTTGCTTTCAGGGGTTGGTT
| Start of BLAST Alignment: | NT 462 / Exon 2 of 17 |
| First 15 bp Perfect Match: | NT 462 / Exon 2 of 17 |
BLAST Details: Query Sequence: 29862_LB1D Length: (496 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g60740 68416.t06280 tubulin folding cofactor D identic... 2118 3.5e-90 1 >At3g60740 68416.t06280 tubulin folding cofactor D identical to tubulin folding cofactor D GI:20514263 from [Arabidopsis thaliana] Length = 6096 Plus Strand HSPs: Score = 2118 (323.8 bits), Expect = 3.5e-90, P = 3.5e-90 Identities = 434/441 (98%), Positives = 434/441 (98%), Strand = Plus / Plus Query: 56 TTATCTATGCTTTAGTTACTGTATGTGGGTACAAAGCTGTTATCAAGTTCTTTCCGCATC 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 TTATCTATGCTTTAGTTACTGTATGTGGGTACAAAGCTGTTATCAAGTTCTTTCCGCATC 561 Query: 116 AAGTATCCGATCTGGAACTCGCCGTTTTGCTCCTCGAGAAGTGCCATAGTACAAATTCTG 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 AAGTATCCGATCTGGAACTCGCCGTTTTGCTCCTCGAGAAGTGCCATAGTACAAATTCTG 621 Query: 176 TTTCTGCCTTGAGGCAAGAAAGCACTGGAGAAATGGAGGCCAAATGTGTTACTCTTTTGT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 622 TTTCTGCCTTGAGGCAAGAAAGCACTGGAGAAATGGAGGCCAAATGTGTTACTCTTTTGT 681 Query: 236 GGCTTTCAATCCTTGTGTTGGTTCCGTTTGATATTTCTTCTGTTGATACAAGCATTGCTG 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 682 GGCTTTCAATCCTTGTGTTGGTTCCGTTTGATATTTCTTCTGTTGATACAAGCATTGCTG 741 Query: 296 ATGACAAGACCTTTGGTGTGGATGACCTTGCTCCTTTGGTATTGAAGATATTAGGTTTCT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 742 ATGACAAGACCTTTGGTGTGGATGACCTTGCTCCTTTGGTATTGAAGATATTAGGTTTCT 801 Query: 356 GTAAGGACTATCTGTGCAGTGCTGGACCAATGCGCAGGATATCGGGGTTGCTACTCTCTA 415 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 802 GTAAGGACTATCTGTGCAGTGCTGGACCAATGCGCAGGATATCGAGGTTGCTACTCTCTA 861 Query: 416 AGCTTTTAACTCGTCCGGATATGGGAAAAGCTTTTTCGAGGGTCTGTTCCTACCACCATC 475 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 862 AGCTTTTAACTCGTCCGGATATGGGAAAAGCTTTTTCGAGG-TCTGTTCCTACCACCATC 920 Query: 476 AGTTGCTTTCAGGGGTTGGTT 496 ||| |||| ||| | ||| || Sbjct: 921 AGT-GCTT-CAGTG-TTGTTT 938