At1g12770 SYNGENTA 29863
Genomic Sequence (from TAIR)
tgtatgttagccatttagattgcctcagagttttttggtttcaccctgagttagaaattgtgagtctcggcctgatatattagaatgcttttggccggac tagagtggggttttgttgtgtaaactgccacatgctgctaaattggcttgttaggtgatgatgcttttcatgcccgccaggtgttcgacgaattgcctca ttaattttcctcggcttgtttcttaatattttttggcgttttataaatctgattcctttaagatatatctcattcgatattagtattactagatttaaga aaatcagtagtttgtctactaaatcaacaaagttgatgtctttttatttcagccttgtcggtgtatctgcgaatagtatgttcttattgctgtctaattt ggattccatgtgctttgcaggctgttttgagcaaacgctgtgataaagaggctttctttcttgctagcaagtacacacgagtgacATGGCGGCATCAACT TCAACCCGATTCCTTGTTCTGCTCAAAGATTTTTCTGCCTTCAGAAAGATATCATGGACTTGTGCTGCAACTAATTTTCACCGCCAATCTCGTTTTTTAT GCCATGTTGCGAAAGAAGACGGGTCTCTTACTCTTGCAAGCCTTGATTTGGGGAACAAACCACGGAAATTTGGGAAGGGTAAGGCGATGAAGCTTGAGGG AAGTTTTGTTACTGAAATGGGTCAAGGTAAGGTAAGAGCGGTAAAGAACGATAAAATGAAAGTTGTCAAGGAAAAAAAGCCAGCTGAGATAGTGTCTCCT TTGTTTTCTGCAAAATCCTTTGAGGAGCTTGGCCTCCCGGATTCCTTGTTAGACAGTTTGGAAAGAGAAGGTTTCTCTGTCCCAACAGATGTCCAATCAG CAGCTGTCCCGGCAATAATCAAAGGTCACGATGCAGTGATTCAGTCTTACACAGGATCTGGCAAAACATTAGCTTATCTGCTTCCAATATTGTCCGAAAT TGGTCCTCTAGCAGAAAAATCTAGAAGTTCGCACAGTGAAAATGATAAGAGGACTGAGATTCAGGCAATGATCGTGGCTCCATCAAGAGAACTCGGTATG CAGATAGTAAGAGAGGTAGAGAAACTGCTCGGACCTGTTCACCGTAGAATGGTTCAGCAGTTGGTAGGAGGTGCAAACCGAATGAGGCAAGAAGAGGCCC TTAAGAAAAATAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAATTGCAGAGATAAGCAAAGGTGGAAAATTGCACACTCATGGGTGTAGATTCTTGGT GCTAGACGAAGTCGATGAGCTTTTATCGTTTAA◄TTTCCGAGAAGATATCCA►TCGAATACTAGAACATGTAGGAAAGAGATCTGGGGCTGGTCCTAAAG GAGAAGTCGATGAACGGGCTAACCGGCAGACCATTCTAGTCTCTGCAACTGTGCCATTCTCGGTTATCCGAGCAGCTAAAAGCTGGAGTCACGAGCCGGT TCTTGTCCAAGCCAACAAAGTCACTCCTCTTGATACCGTTCAACCATCTGCACCGGTAATGAGCTTGACTCCCACAACTTCTGAAGCTGATGGCCAGATT CAGACTACTATTCAGAGCTTACCTCCAGCTTTAAAACACTATTACTGCATCTCAAAGCATCAACACAAAGTCGACACGTTAAGGAGATGCGTTCACGCCC TCGATGCCCAATCGGTTATAGCTTTCATGAACCACTCAAGGCAGCTCAAAGATGTGGTCTACAAACTCGAAGCTCGTGGTATGAATTCAGCTGAGATGCA CGGAGATCTCGGGAAGCTAGGGAGATCAACAGTTCTAAAGAAGTTCAAGAACGGGGAAATCAAGGTACTTGTGACAAACGAGCTCTCTGCCCGGGGTCTG GATGTTGCGGAATGTGATCTGGTGGTGAATCTTGAGCTTCCAACTGATGCGGTTCACTATGCTCATCGAGCTGGGAGAACAGGGAGGCTGGGAAGGAAAG GGACGGTGGTAACAGTGTGCGAGGAATCACAAGTGTTTATAGTGAAGAAGATGGAGAAGCAGCTTGGTTTGCCTTTCTTGTATTGTGAGTTTGTTGATGG AGAGCTTGTTGTCACTGAGGAAGATAAAGCTATTATAAGgtgaaaatctaaagatgtaattttcagatactattattactattgaaaattcagagtcttg tccctttttcttatatattgtaaacatatttttaccagacgaagaacatctaaaaccagtgtcgaatttactccagttttgaccgactctgactattacg aaaacccataggctccatgaaacagcaggcccctgaggcatttcaccgaacaacttgtgggctatatcattgaaccggtttcgaccgtataactcagcta aaccaattccagtatagctttgactgaaccggtttaatcgataagtttaaggtattcttttgtcacacagagtgagtttgaagaagaagaacgattcagc ttgagatggtgaggatgatgatacggagattgagttctcaagcttcgagatttgttcagcctcgtctcctggagacaggtactctgagaattgctttgat taattgcccaaatgagctacttttttgctgcgaacgcggcttctctactttcagCGATAGAAATCTCTCTTATAGAGACAAATTGAGCAGTGGGCTTGTC GGTATTAAGGCAGATGATGCTGTTGATCTGTTCCGAGACATGATTCAGTCTCGTCCTCTTCCCACTGTTATAGATTTCAATAGATTGTTTAGTGCCATTG CCAAAACGAAACAGTATGAGCTAGTGTTAGCTCTCTGCAAGCAAATGGAATCGAAGGGAATTGCACATAGCATCTACACTTTGAGTATTATGATCAATTG TTTCTGTCGCTGTCGTAAACTTTCTTACGCTTTTTCTACTATGGGGAAGATCATGAAACTTGGGTATGAGCCTGATACAGTCATCTTTAACACTCTACTC AATGGCTTATGTCTCGAGTGTAGAGTTTCTGAAGCTCTGGAATTAGTTGATCGAATGGTAGAAATGGGACATAAACCCACTCTCATAACGCTTAACACTC TGGTCAATGGCCTTTGTCTCAACGGTAAAGTCTCTGATGCTGTGGTTTTGATTGATCGAATGGTTGAGACTGGCTTTCAACCCAATGAAGTAACTTATGG ACCGGTTTTAAATGTAATGTGTAAGTCCGGCCAAACTGCCCTTGCCATGGAGTTGCTCAGAAAGATGGAAGAAAGAAATATCAAGCTCGATGCAGTCAAA TACAGTATCATCATTGATGGTCTTTGCAAAGATGGGAGCCTCGACAATGCATTCAACCTTTTCAATGAAATGGAAATCAAAGGGTTCAAAGCTGATATTA TTACCTACAACACTCTCATTGGAGGCTTTTGTAATGCTGGTAGATGGGATGATGGTGCCAAGTTATTGAGGGATATGATCAAGAGGAAAATCAGCCCCAA CGTTGTCACATTCAGTGTTTTGATTGATAGTTTTGTGAAAGAGGGAAAACTACGAGAGGCCGATCAACTGCTCAAGGAGATGATGCAACGAGGTATAGCT CCTAATACTATTACATATAATTCCTTGATAGATGGGTTTTGCAAGGAGAACCGCCTAGAGGAGGCCATCCAGATGGTGGATCTGATGATTAGCAAGGGAT GCGATCCTGATATCATGACGTTTAATATCCTCATAAATGGATATTGTAAGGCTAATCGGATTGACGATGGTTTGGAACTCTTCCGCGAAATGTCTCTGAG AGGAGTGATTGCTAATACAGTTACTTATAACACTCTTGTCCAAGGGTTTTGTCAATCGGGAAAACTTGAGGTTGCCAAAAAACTCTTCCAAGAGATGGTT TCTCGGCGTGTTCGTCCTGATATTGTGTCCTACAAAATATTGCTGGATGGGTTGTGTGACAATGGAGAACTAGAGAAAGCATTGGAAATATTTGGAAAAA TAGAGAAGAGTAAGATGGAGCTTGATATTGGTATATATATGATCATTATCCATGGGATGTGCAATGCTAGTAAGGTGGATGATGCTTGGGATTTATTCTG TAGCCTCCCTCTCAAAGGAGTGAAGCTTGATGCTAGGGCATACAACATAATGATTTCAGAATTATGTAGGAAAGACTCACTGTCTAAAGCAGACATACTG TTCAGAAAAATGACAGAGGAAGGACATGCTCCAGATGAGTTGACATACAACATACTTATCAGGGCACATCTTGGTGATGATGATGCAACCACAGCAGCTG AACTTATTGAAGAAATGAAGAGTAGTGGGTTCCCAGCAGATGTTTCCACTGTTAAGATGGTTATTAATATGCTTTCTAGTGGTGAATTGGACAAAAGCTT TCTAGATATGCTTTCTACAACTCGGGCTTCATTGAAATGAatatttcttgtgtagctatgatttgttgcttttcaggcatcaacaaggtcaaatgggctc aatttttgtcctaaacacattgaatccattgaacaagcctttttattcagtgaaagaaaactaaaaattcaatcaaatcaactttccattttattcatcg aagtaagagatcagttcgatacatgtggaatataaagcacaactatatcatcatatgtatgtatatttctttcttttagatttgagtaattagaaatggt aactccaaacaaaagaagtaaattcaaagcttattctggtaaccccatggattattgtttgcccatttccactgatctctgcacatctcatccactccat attttgccctttaataaaccaaatcagattgtttaataacattatttatctcctaaaccaatcatgttaatggtgaaagagttaaacttacttccagcc
Border_1 (29863_RBD)
TGATYACGCC:AGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAAC
GATAAAAGCTCATCGACTTCGTCTAGCACCAAGAATC:TACACCCATGAGTGTGCAATTTTCCACCTTTGCTTATCTCTGCAATTCTCCCGGGAGTGCCA
ACAACAATTGCAGGTTTATTTT:CTTAAGGGCCTCTTCTTGCCTCATTCGGTTTGCACCTCCTACCAACTGCTGAACCATTCTACGGKGAACAGGTCCGA
GCAGTTTCTCTACCTCTCTTACTATCTGCATACCGAGTTCTCTTGATGGAGCCACGATCATTGCCTGAATCTCA:GTCCTCTTATCATTTTCACTGKGC:
GAACTTCTAGATTTTTCTGCTAGACGACCAATTTCGGACAATATTGGAAGCAGATAAGCTAATGTTTTGCCAGATCCTGTGTAAGACTGAATCACTGCAT
CGTGACCTTTGATTATTGMCGGGACAGCTGCTGATTGGACATCTGNTGGGACAGAGAAACCTTCTCTTTCCAWACTGTCTAACAANGGAATNCGGGAGGC
CAAGCTTCTTNAAAGGATTTTGCAAAAAAACAAAGGAGACACTATCTTAANCTGGGCTTTTTTT
| Start of BLAST Alignment: | NT 848 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 848 / Exon 1 of 2 |
BLAST Details: Query Sequence: 29863_RBD Length: (659 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g12770 68414.t01322 DEAD/DEAH box helicase family prot... 2665 2.9e-116 1 At1g51380 68414.t05299 eukaryotic translation initiation ... 185 0.994 1 >At1g12770 68414.t01322 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 3953 Minus Strand HSPs: Score = 2665 (405.9 bits), Expect = 2.9e-116, P = 2.9e-116 Identities = 549/567 (96%), Positives = 553/567 (97%), Strand = Minus / Plus Query: 659 AAAAAAAGCCCAGNTTAAGATAGTGTCTCCTTTGTTTTTTTGCAAAATCCTTTNAAGAAG 600 |||||||||| || | | |||||||||||||||||||| | |||||||||||| | || | Sbjct: 287 AAAAAAAGCC-AGCTGA-GATAGTGTCTCCTTTGTTTTCT-GCAAAATCCTTTGAGGA-G 342 Query: 599 CTTGGCCTCCCGNATTCCNTTGTTAGACAGTWTGGAAAGAGAAGGTTTCTCTGTCCCANC 540 |||||||||||| ||||| ||||||||||||+|||||||||||||||||||||||||| | Sbjct: 343 CTTGGCCTCCCGGATTCC-TTGTTAGACAGTTTGGAAAGAGAAGGTTTCTCTGTCCCAAC 401 Query: 539 AGATGTCCAATCAGCAGCTGTCCCGKCAATAATCAAAGGTCACGATGCAGTGATTCAGTC 480 |||||||||||||||||||||||||+|||||||||||||||||||||||||||||||||| Sbjct: 402 AGATGTCCAATCAGCAGCTGTCCCGGCAATAATCAAAGGTCACGATGCAGTGATTCAGTC 461 Query: 479 TTACACAGGATCTGGCAAAACATTAGCTTATCTGCTTCCAATATTGTCCGAAATTGGTCG 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 TTACACAGGATCTGGCAAAACATTAGCTTATCTGCTTCCAATATTGTCCGAAATTGGTCC 521 Query: 419 TCTAGCAGAAAAATCTAGAAGTTCGCMCAGTGAAAATGATAAGAGGACTGAGATTCAGGC 360 ||||||||||||||||||||||||||+||||||||||||||||||||||||||||||||| Sbjct: 522 TCTAGCAGAAAAATCTAGAAGTTCGCACAGTGAAAATGATAAGAGGACTGAGATTCAGGC 581 Query: 359 AATGATCGTGGCTCCATCAAGAGAACTCGGTATGCAGATAGTAAGAGAGGTAGAGAAACT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 AATGATCGTGGCTCCATCAAGAGAACTCGGTATGCAGATAGTAAGAGAGGTAGAGAAACT 641 Query: 299 GCTCGGACCTGTTCMCCGTAGAATGGTTCAGCAGTTGGTAGGAGGTGCAAACCGAATGAG 240 ||||||||||||||+||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 GCTCGGACCTGTTCACCGTAGAATGGTTCAGCAGTTGGTAGGAGGTGCAAACCGAATGAG 701 Query: 239 GCAAGAAGAGGCCCTTAAGAAAA-TAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAAT 181 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 702 GCAAGAAGAGGCCCTTAAGAAAAATAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAAT 761 Query: 180 TGCAGAGATAAGCAAAGGTGGAAAATTGCACACTCATGGGTGTAGATTCTTGGTGCTAGA 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 762 TGCAGAGATAAGCAAAGGTGGAAAATTGCACACTCATGGGTGTAGATTCTTGGTGCTAGA 821 Query: 120 CGAAGTCGATGAGCTTTTATCGTTTAA 94 ||||||||||||||||||||||||||| Sbjct: 822 CGAAGTCGATGAGCTTTTATCGTTTAA 848 >At1g51380 68414.t05299 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Length = 2281 Minus Strand HSPs: Score = 185 (33.8 bits), Expect = 5.2, P = 0.994 Identities = 159/271 (58%), Positives = 159/271 (58%), Strand = Minus / Plus
Border_2 (29863_LBU)
ATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCGAATACTAGAACATGTAGGAAAGAGATCTGGGGCTG
GTCCTAAAGGAGAAGTCGATGAACGGGCTAACCGGCAGACCATTCTAGTCTCTGCAACTGTGCCATTCTCGGTTATCCGAGCAGCTAAAAGCTGGAGTCA
CGAGCCGGTTCTTGTC:CAAGCCAACAAAGTCACTCCTCTTGATACCGTTCAACCATCTGCACCGGTAATGAGCTTGACT:CCCACAACTTCTGAA:GCT
GATGGCCAGATTCAGACTACTWTYMAGGAGCWTACCTCCAGCTTTAAAACACTATTACTGCATCTCAAAGCATCAACACCAAANCTGAA
| Start of BLAST Alignment: | NT 866 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 866 / Exon 1 of 2 |
BLAST Details: Query Sequence: 29863_LBU Length: (386 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g12770 68414.t01322 DEAD/DEAH box helicase family prot... 1545 2.2e-64 1 >At1g12770 68414.t01322 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 3953 Plus Strand HSPs: Score = 1545 (237.9 bits), Expect = 2.2e-64, P = 2.2e-64 Identities = 311/317 (98%), Positives = 315/317 (99%), Strand = Plus / Plus Query: 63 TCGAATACTAGAACATGTAGGAAAGAGATCTGGGGCTGGTCCTAAAGGAGAAGTCGATGA 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 TCGAATACTAGAACATGTAGGAAAGAGATCTGGGGCTGGTCCTAAAGGAGAAGTCGATGA 926 Query: 123 ACGGGCTAACCGGCAGACCATTCTAGTCTCTGCAACTGTGCCATTCTCGGTTATCCGAGC 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 ACGGGCTAACCGGCAGACCATTCTAGTCTCTGCAACTGTGCCATTCTCGGTTATCCGAGC 986 Query: 183 AGCTAAAAGCTGGAGTCACGAGCCGGTTCTTGTCCAAGCCAACAAAGTCACTCCTCTTGA 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 AGCTAAAAGCTGGAGTCACGAGCCGGTTCTTGTCCAAGCCAACAAAGTCACTCCTCTTGA 1046 Query: 243 TACCGTTCAACCATCTGCACCGGTAATGAGCTTGACTCCCACAACTTCTGAAGCTGATGG 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 TACCGTTCAACCATCTGCACCGGTAATGAGCTTGACTCCCACAACTTCTGAAGCTGATGG 1106 Query: 303 CCAGATTCAGACTACTWTYMAGGAGCWTACCTCCAGCTTTAAAACACTATTACTGCATCT 362 ||||||||||||||||+|++|| |||+||||||||||||||||||||||||||||||||| Sbjct: 1107 CCAGATTCAGACTACTATTCAG-AGCTTACCTCCAGCTTTAAAACACTATTACTGCATCT 1165 Query: 363 CAAAGCATCAACACCAA 379 |||||||||||||| || Sbjct: 1166 CAAAGCATCAACACAAA 1182