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At5g57930 SYNGENTA 31895

Genomic Sequence (from TAIR)

gccaattcggttcgatttcggtttgtattttccggtttacttgttactttggcttgtgatttagtcttgtttcttagccaattcggttcgatttcggttt
gtaagtttacttgtttctttgcattactctgtctgagtgtttaatacaatgttagttttggttaatatcctaaattcaaattggaaagaaaacattaaag
gccggatcggttatacaactgtggaatttggaaacaaatgttattataagtgggcctaatgggaacttctgcccattaaaggcccattatttgaacttat
tagctttaagcttgtccacgatttacattagctatcttcttcgtctccgggactgagaccgctctctcttccttatcctccatcttccaatggtttaatc
cagcaactgtcgacgATGTCGATAACGTACTCCGCTATTTCCTgtaagtttcttcctcactgtgtgtcgaatccgtcctcaatgctcaattttatccatt
tattgtgagactgtgattgattttggtttccgttgttttatccagctagtacagTTTCTGGGTTTTCACCAAAAAGTGTACCTTTTGCTATTCATAGCGT
AACCAGGAGGCAATTTCTTAATCCCAACACGTTTTATAGATTTGGGTTCTCTCCTTCTCTTCAGgtcagattcctttactagtcagtatcatccaattct
ccagactctgcttcgttgttgttttggttcttagaattagaccacacttcgttgcttccctttgaagtagagagtcaatgtttactgttatgtgcggata
tgttgtgcagGGAAGTAGCATTGAGTTTAGCCTTCAGTTGAATTCAAGAGTTGTGCTTAGTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGAT
CGTCCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCCAGTCCCTATTGTGGACCTGAGACGA◄GCTGCGAGGGAGAGA
GTCAAGAACA◄ACAAAGACAAACCTAAGAGACCTCTACCTCCGCCTAAAAA►TGGTATGGTTGTGAAG►AGCCTTGTGCCTCTTGCTTATAAAGTATACA
ATGCAAGAATCAGATTGATCAACAATCTCCACCGGCTTATGAAAGTTGTTCGTGTTAATGCTTGTGGgtaaaaattctcttcttcttcttgtttcatttt
tggtctgttttgagtatggcctttttttgatgttgtatgattggtctcttagGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATCCATTTAAGTC
GTGTAAAGGTCCCAATACTTCCCAAAGGAAAGGTCTTCATGAATGGACTAACTCGGTTATTGAGGACGTTATTGTTCCTCTTGAAGCCTATCACCTTTTT
GACCGCCTTGGCAAGCGTATCCGTCATGATGAAAGATTCTCGATTCCCCGAGTTCCTGCTGTAGTTGAGCTCTGCATTCAGGGCGGCGTTGAAATACCCG
AATTTCCAGCAAAAAGGAGAAGAAAACCGATTATCCGCATTGGCAAAAGCGAGTTTGTTGATGCAGATGAAACTGAATTGCCTGATCCAGAGCCTCAGCC
TCCTCCAGTGCCATTGTTAACTGAGTTACCTGTCTCAGAGATCACTCCCCCATCTAGCGAAGAAGAAACAGTCTCCTTAGCCGAAGAAACATTACAGGCC
TGGGAAGAAATGAGAGCAGGAGCCAAAAAGCTGATGAGGATGTACAGGGTTAGGGTCTGTGGGTACTGTCCAGAGGTTCACGTAGGTCCAACGGGACACA
AGGCCCAGAACTGTGGTGCATTCAAGCACCAACAGCGGAATGGCCAGCATGGTTGGCAATCTGCAGTACTTGACGACTTGATACCGCCAAGATATGTTTG
GCATGTTCCTGATGTGAATGGGCCACCGATGCAGCGAGAGCTACGAAGCTTCTACGGGCAAGCACCTGCTGTTGTGGAGATATGTGCTCAGGCTGGCGCT
GTTGTACCTGAGCATTATAGAGCTACAATGAGACTGGAGGTTGGAATTCCTTCGAGTGTGAAAGAAGCTGAGATGGTTGTTTGAtatgtagaagaccttg
taaacttcttcttgtacaaaatcctccattccaccttgtgttgtataataatatcacagcccaggtctttttgacttttgaaggacaaaaaaaacaatcc
acgctaatcctattatcaagggtaaaaatgtcatttgcttcgttttcatcttttctcgttgccattttcttttttttgtctgtgtcaagtcgataccact
tgtctggtagctttatacccactttcatctttttcatgttcgtagttgttcctctggttatcctcatcaacgggacccttgaaaccgtgtagccatgtaa
gcctttgtctttgtctctttctcttgcttcagcaagttcacgtctgctctatttctaattttgttctaagattcaattctccttttttctatgcgagaaa
ttta

Border_1 (31895_LB1D)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTCGTCTCAGGTCCACAATAG
GGACTGGGAAAGGTTTCTTCTCTCGCCTTGTGTACTGCTTAGGTAAGTCTTCATTCTGAGGACGATCATTTCTCACAACTAATGGCAGAGATCGACGCTC
TTTACTAAGCACAACTCTTGAATTCAACTGAAGGCTAAACTCAATGCTACTTCCCTGCACAACATATCCGCACAKMACTACCAAA

Start of BLAST Alignment:	NT 594 / Exon 3 of 4
First 15 bp Perfect Match:	NT 569 / Exon 3 of 4

BLAST Details:
Query Sequence: 31895_LB1D 
Length: (385 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g57930 68418.t06720 expressed protein                       993  5.1e-40   1
At2g23470 68415.t02620 expressed protein contains Pfam do...   177  0.94      1



>At5g57930 68418.t06720 expressed protein
        Length = 1890

  Minus Strand HSPs:

 Score = 993 (155.0 bits), Expect = 5.1e-40, P = 5.1e-40
 Identities = 215/232 (92%), Positives = 217/232 (93%), Strand = Minus / Plus

Query:   385 TTTGGTAGTKMTGTGCGGATATGTTGTGCAGGGAAGTAGCATTGAGTTTAGCCTTCAGTT 326
             |||  | ||++|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   452 TTTACT-GTTATGTGCGGATATGTTGTGCAGGGAAGTAGCATTGAGTTTAGCCTTCAGTT 510

Query:   325 GAATTCAAGAGTTGTGCTTAGTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGA 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   511 GAATTCAAGAGTTGTGCTTAGTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGA 570

Query:   265 TCGTCCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCC 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   571 TCGTCCTCAGAATGAAGACTTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCC 630

Query:   205 AGTCCCTATTGTGGACCTGAGACGAATTGACGCTTAGACA-ACTTAATAACA 155
             |||||||||||||||||||||||||  || ||    || | | | || ||||
Sbjct:   631 AGTCCCTATTGTGGACCTGAGACGAGCTG-CGAGG-GAGAGAGTCAAGAACA 680


>At2g23470 68415.t02620 expressed protein contains Pfam domain, PF04884:
           Protein of unknown function, DUF647
        Length = 2942

  Minus Strand HSPs:

 Score = 177 (32.6 bits), Expect = 2.9, P = 0.94
 Identities = 199/352 (56%), Positives = 201/352 (57%), Strand = Minus / Plus

Border_2 (31895_LB2U)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
WTCCMAATCSAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTCGTCTCAGGTCCACAATA
GGGACTGGGAAAGGTTTCTTCTCTCTCGTHTGGTTGTGAASAGCCTTGTGCCTCTTGCTTATAAAGTATACAATGCAAGAATCAGATTGATCAACAATCT
CCACCGGCTTATGAAAGTTGTTCGTGTTAATGCTTGTGGGTAAAAATTCTCTTCTTCTTCTTGTTTCATTTTTGGTCTGTTTTGAGTATGGCCTTTTTTT
GATGTTGTATGATTGGTCTCTTAGGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATC

Start of BLAST Alignment:	NT 634 / Exon 3 of 4
First 15 bp Perfect Match:	NT 650 / Exon 3 of 4

BLAST Details:
Query Sequence: 31895_LB2U 
Length: (462 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g57930 68418.t06720 expressed protein                      1166  3.1e-48   1
At1g53040 68414.t05508 expressed protein contains Pfam pr...   185  0.90      1
At1g77020 68414.t08202 DNAJ heat shock N-terminal domain-...   181  0.97      1
At3g28210 68416.t03197 zinc finger (AN1-like) family prot...   179  0.97      1


>At5g57930 68418.t06720 expressed protein
        Length = 1890

  Plus Strand HSPs:

 Score = 1166 (181.0 bits), Expect = 3.1e-48, P = 3.1e-48
 Identities = 234/237 (98%), Positives = 235/237 (99%), Strand = Plus / Plus

Query:   226 TCGTHTGGTTGTGAASAGCCTTGTGCCTCTTGCTTATAAAGTATACAATGCAAGAATCAG 285
             | || ||||||||||+||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   721 TGGTATGGTTGTGAAGAGCCTTGTGCCTCTTGCTTATAAAGTATACAATGCAAGAATCAG 780

Query:   286 ATTGATCAACAATCTCCACCGGCTTATGAAAGTTGTTCGTGTTAATGCTTGTGGGTAAAA 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   781 ATTGATCAACAATCTCCACCGGCTTATGAAAGTTGTTCGTGTTAATGCTTGTGGGTAAAA 840

Query:   346 ATTCTCTTCTTCTTCTTGTTTCATTTTTGGTCTGTTTTGAGTATGGCCTTTTTTTGATGT 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   841 ATTCTCTTCTTCTTCTTGTTTCATTTTTGGTCTGTTTTGAGTATGGCCTTTTTTTGATGT 900

Query:   406 TGTATGATTGGTCTCTTAGGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATC 462
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   901 TGTATGATTGGTCTCTTAGGTGGTGCAATGAGATTCATGTTGGACCTTATGGGCATC 957

  Minus Strand HSPs:

 Score = 240 (42.1 bits), Expect = 0.0021, P = 0.0021
 Identities = 99/153 (64%), Positives = 99/153 (64%), Strand = Minus / Plus

Query:   304 GTGGAGATTGTTGATCAATCTGATTC-TTGCATTGTAT-A-CTTTATAAGCAAGAGGCAC 248
             ||  |||  || ||||  |   |||  |||      || | | |  | || | || | ||
Sbjct:   531 GTAAAGAGCGTCGATCTCTGCCATTAGTTGTGAGAAATGATCGTCCTCAGAATGAAG-AC 589

Query:   247 AAGGCTSTTCACAACCADACGAGAGAGAAGAAACCTTTCCCAGTCCCTATTGTGGACCTG 188
                 ||   ||  ||   | | ||||||||||||||||||||||||||||||||||||||
Sbjct:   590 TTACCTAAGCAGTACACAAGGCGAGAGAAGAAACCTTTCCCAGTCCCTATTGTGGACCTG 649

Query:   187 AGACGAATTGACGCTTAGACA-ACTTAATAACA 156
             ||||||  || ||    || | | | || ||||
Sbjct:   650 AGACGAGCTG-CGAGG-GAGAGAGTCAAGAACA 680


>At1g53040 68414.t05508 expressed protein contains Pfam profile: PF04765
           protein of unknown function (DUF616)
        Length = 3039

  Plus Strand HSPs:

 Score = 185 (33.8 bits), Expect = 2.3, P = 0.90
 Identities = 93/142 (65%), Positives = 93/142 (65%), Strand = Plus / Plus