At5g27720 SYNGENTA 32187
Genomic Sequence (from TAIR)
taacaatatatactaaaacagataatattataaagttaagggactcgagtgcaaaactcaaaaaagttcccattgacctaaaactaaaagaccaccgatt cattagaaatccatccctctcactgtcaaaacccgagaagcagaaaaaagcaaaaaacagatttcgaagtttcgacgcctctctattcttcgatctcttt catatttgaatcgttcaccttcttgccgatcttcggagtatattacaaggtttctcccttttctctcagattttttttagtagctgaattagggtttttg ttccgttttcgctattgcttcttccgcatcttataaagggtttaatgttatacttctctgatgtcatcaggttcttaacggatctctaaatcttctgatt taagaagATGgtaagttactagacaaacttagggtttttttccttctttcttgtttgcgttaaagtttcaatttttattaactgaaagctgttgttttga ttttatagCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATGgtgagtaaaatttcgacccttgattacaattttgttatatatgaagtgaa gctgagtttaagtgagcattgcattagggatctaaaggaacttccttttactgtaattttgaatcttgttttgttttggtagCTCGTGGAGCTTAAGAAT GGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGCGTGAAGTCATATGTACATCAAAGgttatcttatgttttcata tgttgatacaaatatactttgtttagacttcgtgatgaaattttgtgtagctgacactcatatattttgctgcttgattactctagGACGGAGATAGATT TTGGAGGATGCCGGA◄ATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGgtaatttttttttgtgtgtgtgtgtatatatctct tgcttgatctagttttttctttgttcccctctctctggaatgatgatgcttagccaaatcagatatgtgctccaagaggcatttttctgtggaaccttgt tcagcagatggtgtgcctcttgttgtagtgcgtcttagacgatatcacagggaatggttattgctgaccagaatgttgacccacttttatggactttgct gtgttgtgtttctgatgcgatttttctctattgtttctactttatttcattccctctaaaatcaaattatattcacataccataaacgatatcttcatct agaaggacagtcatatgctgtttctatttatgttcttactgctgcaacctagattgagttaactgacttaaattgatttcttctctcttcagGTGATTGA TAAAGTACAGGAGGAGAAGACACGCACAGgtatagtattactcatgtctatattgtacctttactgagatatgcttcgagttttctgaggtgttaatatt ttgccagagtagacattgagaatacttcaggtgttaataacgatggttgaatatgtgcagATAGAAAACCACCAGGTGTTGGACGTGGAAGAGGACGTGG TGTGGATGATGGAGGAGCCAGAGGCAGAGGCAGAGGAACTTCAATGGGGAAGATGGGTGGCAACAGAGgtaaaaaatacacaaacaaagcttgtcacaaa actctgattttactagaatacttcaaatatctgtgtcttgccacaatgggatttaagctaaaactctaatatgttatgaaaaacagGAGCAGGTCGCGGC CGTGGTTGAtgcaacaagttttaaagactcgctgccaaatctgctaacttcccattgtggagaaaaccaaaagttacataagaagttggtctgttgttgg ttttctattaagtatgtaagggatagggagtgtgtttttcgattctccttgtgatcttttcgaaaaatgaaatttgtcttttgcctttttgtggtatatg tgaaattccaattgttttcatttgcgcttaaaaatgaatctttcaggtcttgaatttatataattgttagagaatttatacaattaaccaacgacagggt ttttataagatctttggtccatcttacccttttattatttttctttttttcctatctattctttttttcctctttcaccggattttctccatcactcgtc ggcatgacatataagattagatatgatttaaaaaacgcatgtatttcaaagacaaaacatgctcttaagtctttacattgacttgtaaatttttgtcaag ctatctaacaaaatctcatattttttttttggaacagattcatatttttgtcaagatttcatgttatataaacaaattacatgtcttttatccaatatat cattagtatttcataaaataactatgttttaatgtaataattatacatatctgtcaatatttcacgttatgtaaggagtcatatgtatttcttcaaatat catgaaaattacatatttttcttcactgtatttttacaattgaattttcctcttctcaaatctatcggaagtcttattgtaatattagaaattgataaag atattttcgtcaatatacaccgtctaacgtgtgaatccatagttcttttctaacaaaaactaaacttatgattaatatctttatttaatctcagaatttg gctatctagtaataacaacctaattattatctgagtaaatccctagaaaaaactagtagtaatggaatttgcatgagaatatgagtattttggtcattta ttttatttttctcaatgtaaacttaaatatttatgggtaaacaaaaaataaaatcatagaagatgatataattaaagatttgcgaacgaaaatctcataa tcaaatctctctcttctgacacacgaaataatgacgataataaccctatcccgacacaatctctgacataaaatcaaagcatttaatgctcaaaatctct ataaaaaaattcatgcatcagaatagttagcagataacgtattatcaggataacatgataacaaatat►ctcggtaatatttattaggttaacatgataa caaatatttatatcaataagtttataattatgtcatggtaagtcattttgtatcgcgataagttataattgatgtgatatatatagatatttaccatctt
Border_1 (32187_LB1D)
CTTCTTGCCGATCTTCGGAGTATATTACAAGGTTTCTCCCTTTTCTCTCAGATTTTTTTTAGTAGCTGAATTAGGGTTTTTGTTCCGTTTTCGCTATTGC
TTCTTCCGCATCTTATAAAGGGTTTAATGTTATACTTCTCTGATGTCATCAGGTTCTTAACGGATCTCTAAATCTTCTGATTTAAGAAGATGGTAAGTTA
CTAGACAAACTTAGGGTTTTTTTCCTTCTTTCTTGTTTGCGTTAAAGTTTCAATTTTTATTAACTGAAAGCTGTTGTTTTGATTTTATAGCTTCCTCTAT
CGCTGCTTAAAACTGCTCAAGGGCATCCTATGGTGAGTAAAATTTCGACCCTTGATTACAATTTTGTTATATATGAAGTGAAGCTGAGTTTAAGTGAGCA
TTGCATTAGGGATCTAAAGGAACTTCCTTTTACTGTAATTTTGAATCTTGTTTTGTTTTGGTAGCTCGTGGAGCTTAAGAATGGAGAGACATACAATGGG
CATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGCGTGAAGTCATATGTACATCAAAGGTTATCTTATGTTTTCATATGTTGATACAAATATACT
TTGTTTAGACTTCGTGATGAAATTTTGTGTAGCTGACACTCATATATTTTGCTGCTTGATTACTCTAGGACGGAGATAGATTTTGGAGGATGCCGGA
| Start of BLAST Alignment: | NT 508 / Exon 5 of 8 (Intron 1 in 5’ UTR) |
| First 15 bp Perfect Match: | NT 508 / Exon 5 of 8 (Intron 1 in 5’ UTR) |
| Reverse Complement |
BLAST Details: Query Sequence: 32187_LB1D Length: (697 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g27720 68418.t03025 small nuclear ribonucleoprotein, p... 3429 1.8e-150 1 At5g56520 68418.t06546 expressed protein 212 0.16 1 At5g25360 68418.t02731 expressed protein 214 0.22 1 At5g50920 68418.t05867 ATP-dependent Clp protease ATP-bin... 213 0.25 1 >At5g27720 68418.t03025 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SWISS-PROT:Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 [Mus musculus] Length = 1998 Plus Strand HSPs: Score = 3429 (520.5 bits), Expect = 1.8e-150, P = 1.8e-150 Identities = 689/697 (98%), Positives = 689/697 (98%), Strand = Plus / Plus Query: 1 CTTCTTGCCGATCTTCGGAGTATATTACAAGGTTTCTCCCTTTTCTCTCAGANNNNNNNN 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 CTTCTTGCCGATCTTCGGAGTATATTACAAGGTTTCTCCCTTTTCTCTCAGATTTTTTTT 200 Query: 61 AGTAGCTGAATTAGGGTTTTTGTTCCGTTTTCGCTATTGCTTCTTCCGCATCTTATAAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 AGTAGCTGAATTAGGGTTTTTGTTCCGTTTTCGCTATTGCTTCTTCCGCATCTTATAAAG 260 Query: 121 GGTTTAATGTTATACTTCTCTGATGTCATCAGGTTCTTAACGGATCTCTAAATCTTCTGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 GGTTTAATGTTATACTTCTCTGATGTCATCAGGTTCTTAACGGATCTCTAAATCTTCTGA 320 Query: 181 TTTAAGAAGATGGTAAGTTACTAGACAAACTTAGGGTTTTTTTCCTTCTTTCTTGTTTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 TTTAAGAAGATGGTAAGTTACTAGACAAACTTAGGGTTTTTTTCCTTCTTTCTTGTTTGC 380 Query: 241 GTTAAAGTTTCAATTTTTATTAACTGAAAGCTGTTGTTTTGATTTTATAGCTTCCTCTAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 GTTAAAGTTTCAATTTTTATTAACTGAAAGCTGTTGTTTTGATTTTATAGCTTCCTCTAT 440 Query: 301 CGCTGCTTAAAACTGCTCAAGGGCATCCTATGGTGAGTAAAATTTCGACCCTTGATTACA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 441 CGCTGCTTAAAACTGCTCAAGGGCATCCTATGGTGAGTAAAATTTCGACCCTTGATTACA 500 Query: 361 ATTTTGTTATATATGAAGTGAAGCTGAGTTTAAGTGAGCATTGCATTAGGGATCTAAAGG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 ATTTTGTTATATATGAAGTGAAGCTGAGTTTAAGTGAGCATTGCATTAGGGATCTAAAGG 560 Query: 421 AACTTCCTTTTACTGTAATTTTGAATCTTGTTTTGTTTTGGTAGCTCGTGGAGCTTAAGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 AACTTCCTTTTACTGTAATTTTGAATCTTGTTTTGTTTTGGTAGCTCGTGGAGCTTAAGA 620 Query: 481 ATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGC 680 Query: 541 GTGAAGTCATATGTACATCAAAGGTTATCTTATGTTTTCATATGTTGATACAAATATACT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 GTGAAGTCATATGTACATCAAAGGTTATCTTATGTTTTCATATGTTGATACAAATATACT 740 Query: 601 TTGTTTAGACTTCGTGATGAAATTTTGTGTAGCTGACACTCATATATTTTGCTGCTTGAT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 TTGTTTAGACTTCGTGATGAAATTTTGTGTAGCTGACACTCATATATTTTGCTGCTTGAT 800 Query: 661 TACTCTAGGACGGAGATAGATTTTGGAGGATGCCGGA 697 ||||||||||||||||||||||||||||||||||||| Sbjct: 801 TACTCTAGGACGGAGATAGATTTTGGAGGATGCCGGA 837 >At5g56520 68418.t06546 expressed protein Length = 745 Plus Strand HSPs: Score = 212 (37.9 bits), Expect = 0.18, P = 0.16 Identities = 214/379 (56%), Positives = 214/379 (56%), Strand = Plus / Plus
Border_2 (32187_RBU)
CTCGGTAATATTTATTAGGTTAACATGATAACAAATATTTATATCAATAAGTTTATAATTATGTCATGGTAAGTCATTTTGTATCGCGATAAGTTATAAT
TGATGTGATATATATAGATATTTACCATCTTAACTCATTTATTATATCATAATAAAAAATTAACGAGTTACTATAACGTACAAAATATGAATTTCATCCA
ATAACATTATTATTATCACTACCTCTAGATAAAGTTTTAGTTAACTAGGTAATTTAATTGTTAACCAATTTGAATCTGAACAAAAACTACCATTGCGTAA
TCTTCAACCACCACATCTCCGCCGTATTGTTCTCACCCCATCATTTCAGAACCATTTTTTTCCTCTACCGCAAACCCACACCCTAATCGATTTAGAACTA
GATCTTTAAACGATTGAGAGAAACTGCCGGTAATTCGCGAAACTTATTTGGATTTATCGACCAGAACCACAGAGCTTTGAACGGAGACTGGAACTGAATA
TCGGAAAAAAGAAAAACAGAGTTAAGTTGAATCGAATCTATATGAGAGATATTATGTCTCTCGTCTCTGACACACGTTACTGTGTATCTTATATATTACT
TTAGACTGGATAGACTGTGTAGGGGCTTATAGGTCATATTTTGTGTACAAAAACCATATAAACAATGTCGAAAATATGTCAGTTA
| Start of BLAST Alignment: | NT > 1259 / Downstream |
| First 15 bp Perfect Match: | NT > 1259 / Downstream |
BLAST Details: Query Sequence: 32187_RBU Length: (685 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T1G16 67960 3416 3.9e-148 1 T24H24 67057 1557 3.8e-64 1 F5M15 60115 1277 1.7e-51 1 F2D10 61258 1277 1.7e-51 1 T1G16 67960 Length = 93,672 Plus Strand HSPs: Score = 3416 (518.6 bits), Expect = 3.9e-148, P = 3.9e-148 Identities = 684/685 (99%), Positives = 684/685 (99%), Strand = Plus / Plus Query: 1 CTCGGTAATATTTATTAGGTTAACATGATAACAAATATTTATATCAATAAGTTTATAATT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38818 CTCGGTAATATTTATTAGGTTAACATGATAACAAATATTTATATCAATAAGTTTATAATT 38877 Query: 61 ATGTCATGGTAAGTCATTTTGTATCGCGATAAGTTATAATTGATGTGATATATATAGATA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38878 ATGTCATGGTAAGTCATTTTGTATCGCGATAAGTTATAATTGATGTGATATATATAGATA 38937 Query: 121 TTTACCATCTTAACTCATTTATTATATCATAATAAAAAATTAACGAGTTACTATAACGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38938 TTTACCATCTTAACTCATTTATTATATCATAATAAAAAATTAACGAGTTACTATAACGTA 38997 Query: 181 CAAAATATGAATTTCATCCAATAACATTATTATTATCACTACCTCTAGATAAAGTTTTAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38998 CAAAATATGAATTTCATCCAATAACATTATTATTATCACTACCTCTAGATAAAGTTTTAG 39057 Query: 241 TTAACTAGGTAATTTAATTGTTAACCAATTTGAATCTGAACAAAAACTACCATTGCGTAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39058 TTAACTAGGTAATTTAATTGTTAACCAATTTGAATCTGAACAAAAACTACCATTGCGTAA 39117 Query: 301 TCTTCAACCACCACATCTCCGCCGTATTGTTCTCACCCCATCATTTCAGAACCATTTTTT 360 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 39118 TCTTCAACCACCACATCTCCGCCGTATTCTTCTCACCCCATCATTTCAGAACCATTTTTT 39177 Query: 361 TCCTCTACCGCAAACCCACACCCTAATCGATTTAGAACTAGATCTTTAAACGATTGAGAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39178 TCCTCTACCGCAAACCCACACCCTAATCGATTTAGAACTAGATCTTTAAACGATTGAGAG 39237 Query: 421 AAACTGCCGGTAATTCGCGAAACTTATTTGGATTTATCGACCAGAACCACAGAGCTTTGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39238 AAACTGCCGGTAATTCGCGAAACTTATTTGGATTTATCGACCAGAACCACAGAGCTTTGA 39297 Query: 481 ACGGAGACTGGAACTGAATATCGGAAAAAAGAAAAACAGAGTTAAGTTGAATCGAATCTA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39298 ACGGAGACTGGAACTGAATATCGGAAAAAAGAAAAACAGAGTTAAGTTGAATCGAATCTA 39357 Query: 541 TATGAGAGATATTATGTCTCTCGTCTCTGACACACGTTACTGTGTATCTTATATATTACT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39358 TATGAGAGATATTATGTCTCTCGTCTCTGACACACGTTACTGTGTATCTTATATATTACT 39417 Query: 601 TTAGACTGGATAGACTGTGTAGGGGCTTATAGGTCATATTTTGTGTACAAAAACCATATA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39418 TTAGACTGGATAGACTGTGTAGGGGCTTATAGGTCATATTTTGTGTACAAAAACCATATA 39477 Query: 661 AACAATGTCGAAAATATGTCAGTTA 685 ||||||||||||||||||||||||| Sbjct: 39478 AACAATGTCGAAAATATGTCAGTTA 39502 T24H24 67057 Length = 88,848 Plus Strand HSPs: Score = 1557 (239.7 bits), Expect = 3.8e-64, P = 3.8e-64 Identities = 347/384 (90%), Positives = 347/384 (90%), Strand = Plus / Plus Query: 13 TATTAGGTTAACATGATAACAAATATTTATATCAATAAGTTTATAATTATGTCATGGTAA 72 || || ||| | | || |||||||||||||||||||||||||||||||||||| ||| Sbjct: 45303 TAATAC-TTATTAGGTTACAAAATATTTATATCAATAAGTTTATAATTATGTCATGCTAA 45361 Query: 73 GTCATTTTGTATCGCGATAAGTTATAATTGATGTGATATATATAGATATTTACCATCTTA 132 ||||||||||||||||||||||||||| | ||||||||||| || |||||||| ||||| Sbjct: 45362 GTCATTTTGTATCGCGATAAGTTATAACTTATGTGATATATTTA--TATTTACCTTCTTA 45419 Query: 133 ACTCATTTATTATATCATAATAAAAAATTAACGAGTTACTATAACGTACAAAATATGAAT 192 ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||| || ||| Sbjct: 45420 ACTCACTTATTATATCATATAAAAAAATTAACAAGTTACTATAACATGCAAAAAATAAAT 45479 Query: 193 TTCATCCAATAACATTATTATTATCACTACCTCTAGATAAAGTTTTAGTTAACTAGGTAA 252 |||||||||||| |||| ||||||||||||||||||||||| ||||||||| || ||||| Sbjct: 45480 TTCATCCAATAAGATTAATATTATCACTACCTCTAGATAAATTTTTAGTTACCTGGGTAA 45539 Query: 253 TTTAATTGTTAACCAATTTGAATCTGAACAAAAACTACCATTG-CGTAATCTTCAACCAC 311 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 45540 TTTGATTGTTAACCAATTTGAATCTGAACAAAAACTACCATTGTCGTAATCTTCAACCAC 45599 Query: 312 CACATCTCCGCCGTATTGTTCTCACCCCATCATTTCAGAACCATTTTTTTCCTCTACCGC 371 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 45600 CACATTTCCGCCGTATTCTTCTCACCCCATCATTTCAGAACCATTTTTTTCCTCTACCGC 45659 Query: 372 AAACCCACACCCTAATCGATTTAG 395 ||||||||||| |||| |||| | Sbjct: 45660 AAACCCACACCATAATT-ATTTGG 45682