At5g04560 SYNGENTA 32448
Genomic Sequence (from TAIR)
atgtaattcggtcaaatgttggcatgaagaagcaagtttgcaacattaaatttcatttaaaaatcgtgttgacatactttaaaatctaaatataggaaga agaccaaaacattaaatttagtaagattctaatgaacatttataagttataacttataaccaacaaaagttgggtttagcgttgttgctttatctgaaaa cttgcaaactaaaccattttaataggactaatgacaattaacaacaaaatacacttaagcaacaacgtcctcgtgaatataatttgggcctcaggcccat attgctaacgccaactgatatttcactttattccttcttcatctcaccacactctctctctatctctatctctaacggcatagctgactcagtgttctcc ggcattgactcgcctgagaatcagaaagcttagatcggtgagcttttagctccattttctgtttatttacatattatttcctttttttctctctcccttt tttatctggaatttgttctgctaaattttccagctgttacattttccgatcacgagaagaatcactgggtttttatgttaatcaatacatgttcctgttt tctgatcataaatctcagctattaacacctgattttgattctgcgtaataaaaacctctgatttgcttttatcttcactttccccataaacattgcttac tttattcgctcttcttttaccgtttccagctaaaaaattcttcgctattcaatgtgtttctcgttttgttgatgagaaaaatatctgacaaaaaatcatt tattgcattttatggtgcagattcttagttaatgtcgccttctctaaccaagtcagattaaaaaggagtgttcgtccatgttgctttgttttggtgtttg gagagagttttcggagagttaggtgagtgttatttggggtgaggtagtgataaggtttgaagggggagtgattcatcaagtgtgttatgaattcgagggc tgatccgggggatagatattttcgagttcctttggagaatcaaactcaacaagagttcatgggttcttggattccatttacacccaaaaaacctagatca agtctgatggtagatgagagagtgataaaccaggatctaaatgggtttccaggtggtgaatttgtagacaggggattctgcaacactggtgtggatcata atggggtttttgatcatggtgctcatcagggcgttaccaacttaagtatgatgatcaatagcttagcgggatcacatgcacaagcttggagtaatagtga gagagatcttttgggcaggagtgaggtgacttctcctttagcaccagttatcagaaacaccaccggtaatgtagagccggtcaatggaaattttacttca gatgtgggtatggtaaatggtcctttcacccagagtggcacttctcaagctggctataatgagtttgaattggatgacttgttgaatcctgatcagatgc ccttctccttcacaagcttgctgagtggtggggatagcttattcaaggttcgtcaatgtgagtgatcaaatctattttcagtttttttttttccctttct tccgttcttgcagtacttagagtagaacatgaattagaatatcttaagaaagtcatggttttgaacagatggacctccagcgtgtaacaagcctctttac aatttgaattcaccaattagaagagaagcagttgggtcagtctgtgaaagttcgtttcaatatgtaccgtcaacgcccagtctgttcagaacaggtgaaa agactggattccttgaacagatagttacaactactggacatgaaatcccagagccgaaatctgacaaaagtATGCAGAGCATTATGGACTCGTCTGCTGT TAATGCGACGGAAGCTACTGAACAAAATGATGGCAGCAGACAAGATGTTCTGGAGTTCGACCTTAACAAAACTCCTCAGCAGAAACCCTCCAAAAGGAAA AGGAAGTTCATGCCCAAGGTGGTCGTGGAAGGCAAACCTAAAAGAAAGCCACGCAAACCTGCAGAACTTCCCAAAGTGGTCGTGGAAGGCAAACCTAAAA GGAAGCCACGCAAAGCTGCAACTCAGGAAAAAGTGAAATCTAAAGAAACCGGGAGTGCCAAAAAGAAAAATTTGAAAGAATCAGCAACTAAAAAGCCAGC CAATGTTGGAGATATGAGCAACAAAAGCCCTGAAGTCACACTCAAAAGTTGCAGAAAAGCTTTGAATTTTGACTTGGAGAATCCTGGAGATGCGAGGCAA GGTGACTCTGAGTCTGAAATTGTCCAGAACAGTAGTGGCGCAAACTCGTTTTCTGAGATCAGAGATGCCATTGGTGGAACTAATGGTAGTTTCCTGGATT CAGTGTCACAAAT◄AGAC◄AAGACCAATGGATTGGGGGCTATGAACCAGCCAC►TTGAAGTGTCAAT►GGGAAACCAGCCAGATAAACTATCTACAGGAG CGAAACTGGCCAGAGACCAACAACCTGATTTATTGACTAGAAACCAGCAATGCCAGTTCCCAGTGGCAACCCAGAACACCCAGTTCCCAATGGAAAACCA ACAAGCTTGGCTTCAGATGAAAAACCAACTTATTGGCTTTCCATTTGGTAACCAGCAACCTCGCATGACCATAAGAAACCAGCAGCCTTGCTTGGCCATG GGTAATCAACAACCTATGTATCTGATAGGAACTCCACGGCCTGCATTAGTAAGTGGAAACCAGCAACTAGGAGGTCCCCAAGGAAACAAGCGGCCTATAT TTTTGAATCACCAGACTTGTTTACCTGCTGGAAATCAGCTATATGGATCACCTACAGACATGCATCAACTTGTTATGTCAACCGGAGGGCAACAACATGG ACTACTGATAAAAAACCAGCAACCTGGATCATTAATAAGAGGCCAGCAGCCTTGCGTACCTTTGATTGACCAGCAACCTGCAACTCCAAAAGGTTTTACT CACTTGAATCAGATGGTAGCTACCAGCATGTCATCGCCTGGGCTTCGACCTCATTCTCAGTCACAAGTTCCTACAACATATCTACATGTGGAATCTGTTT CCAGGATTTTGAATGGGACTACAGGTACATGCCAGAGAAGCAGGGCTCCTGCATACGATTCTTTACAGCAAGATATCCATCAAGGAAATAAGTACATACT TTCTCATGAGATATCCAATGGTAATGGGTGCAAGAAAGCGTTACCTCAAAACTCTTCTCTGCCAACTCCAATTATGGCTAAACTTGAGGAAGCCAGGGGC TCGAAGAGACAGTATCATCGTGCAATGGGACAGACGGAAAAGCATGATCTAAACTTAGCTCAACAGATTGCTCAATCACAAGATGTGGAGAGACATAACA GCAGCACGTGTGTGGAATATTTAGATGCTGCAAAGAAAACGAAAATCCAGAAAGTAGTCCAAGAAAATTTGCATGGCATGCCACCTGAGGTTATAGAAAT CGAGGATGATCCAACTGATGGGGCAAGAAAAGGTAAAAATACTGCCAGCATCAGTAAAGGTGCATCTAAAGGAAACTCGTCTCCAGTTAAAAAGACAGCA GAAAAGGAGAAATGTATTGTCCCAAAAACGCCTGCAAAAAAGGGTCGAGCAGGTAGAAAAAAATCAGTACCTCCGCCTGCTCATGCCTCAGAGATCCAGC TTTGGCAACCTACTCCTCCAAAGACACCTTTATCAAGAAGCAAGCCTAAAGGAAAAGGGAGAAAGTCCATACAAGATTCAGGAAAAGCAAGAGgtaacta atgtattctacaatctctgtgatataattttgagattttagtaactgatgtgtccaaaccagctccttatcactgttggtgcgttgtatagGTCCATCAG GAGAACTTCTGTGTCAGGATTCTATTGCGGAAATAATTTACAGGATGCAAAATCTGTATCTAGGAGACAAAGAAAGAGAACAAGAGCAAAATGCAATGGT CTTGTACAAAGGAGATGGTGCACTTGTTCCCTATGAGAGCAAGAAGCGAAAACCAAGACCCAAAGTTGACATTGACGATGAAACAACTCGCATATGGAAC TTACTGATGGGGAAAGGAGATGAAAAAGAAGGGGATGAAGAGAAGGATAAAAAGAAAGAGAAGTGGTGGGAAGAAGAAAGAAGAGTCTTCCGAGGAAGGG CTGATTCCTTCATCGCTCGCATGCACCTGGTACAAGgtgaagatccacttctcttctcaactccatttttattcacacaaattagtagaatactcaaaaa tgatgttttgtttgcaaaattttaaaattcactagttaaccatgtcaaataatattcataatgcatcttgtgaagaacaggtgtgcatttatggtgacag ctgaatggtttatgtgcctattatttcttttactgctatagatgaccaattgaacttaaacgtttacagGAGATAGACGTTTTTCGCCATGGAAGGGATC GGTGGTTGATTCGGTCATTGGAGTTTTCCTTACACAGAATGTCTCGGATCACCTTTCAAGgtatatgagttgccttaataaattgagttccaaaacatag aaattaacccatggtggttttacaatgcagCTCTGCGTTCATGTCTCTAGCTGCTCGATTCCCTCCAAAATTAAGCAGCAGCCGAGAAGATGAAAGGAAT GTTAGAAGCGTAGTTGTTGAAGATCCAGAAGGATGCATTCTGAACTTAAATGAAATTCCTTCGTGGCAGGAAAAGGTTCAACATCCATCTGACATGGAAG TTTCTGGGGTTGATAGTGGATCAAAAGAGCAGCTAAGGGACTGTTCAAACTCTGGAATTGAAAGATTTAATTTCTTAGAGAAGAGTATTCAAAATTTAGA AGAGGAAGTATTATCATCACAAGATTCTTTTGATCCGGCGATATTTCAGTCGTGTGGGAGAGTTGGATCCTGTTCATGTTCCAAATCAGACGCAGAGTTT CCTACAACCAGGTGTGAAACAAAAACTGTCAGTGGAACATCACAATCAGTGCAAACTGGGAGCCCAAACTTGTCTGATGAAATTTGTCTTCAAGGGAATG AGAGACCGCATCTATATGAAGGATCTGGTGATGTTCAGAAACAAGAAACTACAAATGTCGCTCAGAAGAAACCTGATCTTGAAAAAACAATGAATTGGAA AGACTCTGTCTGTTTTGGTCAGCCAAGAAATGATACTAATTGGCAAACAACTCCTTCCAGCAGCTATGAGCAGTGTGCGACTCGACAGCCACATGTACTA GACATAGAGGATTTTGGAATGCAAGGTGAAGGCCTTGGTTATTCTTGGATGTCCATCTCACCAAGAGTTGACAGAGTAAAGAACAAAAATGTACCACGCA GGTTTTTCAGACAAGGTGGAAGTGTTCCAAGAGAATTCACAGGTCAGATCATACCATCAACGCCTCATGAATTACCAGGAATGGGATTGTCCGGTTCCTC AAGCGCCGTCCAAGAACACCAGGACGATACCCAACATAATCAACAAGATGAGATGAATAAAGCATCCCATTTACAAAAAACATTTTTGGATCTGCTCAAC TCCTCTGAAGAATGCCTTACAAGACAGTCCAGTACCAAACAGAACATCACGGATGGCTGTCTACCGAGAGATAGAACTGCTGAAGACGTGGTTGATCCGC TCAGTAACAATTCAAGCTTACAGAACATATTGGTCGAATCAAATTCCAGCAATAAAGAGCAGACGGCAGTTGAATACAAGGAGACAAATGCCACTATTTT ACGAGAGATGAAAGGGACGCTTGCTGATGGGAAAAAGCCTACAAGCCAGTGGGATAGTCTCAGAAAAGATGTGGAGGGGAATGAAGGGAGACAGGAACGA AACAAAAACAATATGGATTCCATAGACTATGAAGCAATAAGACGTGCTAGTATCAGCGAGATTTCTGAGGCTATCAAGGAAAGAGGGATGAATAACATGT TGGCCGTACGAATTAAGgtaaatctactaatttcagttgagaccctcatcaaatctgtcagaaggcttgaacatcagtaaattatgtaaccatatttaca acattgcagGATTTCCTAGAACGGATAGTTAAAGATCATGGTGGTATCGACCTTGAATGGTTGAGAGAATCTCCTCCTGATAAAGCCAAgtgggtaaatc acatttttagtgactgcaacactagcacgatcgatttactcaacaattacgtcaaactgagtattaacaagttgctcatgaacatttcacagGGACTATC TCTTGAGCATAAGAGGTCTGGGTTTGAAAAGTGTTGAATGCGTGCGACTCTTAACACTCCACAATCTTGCTTTCCCTgtgagtcagactattccattatc tactaaaaacttagaataactccggctaactaagctggaacttgtattgatgatatgaagGTTGACACGAATGTTGGAAGGATAGCAGTTAGGATGGGAT GGGTGCCTCTACAACCCCTACCTGAATCACTTCAGTTACACCTCCTGGAGCTgtaagtttctttttgtttgtcatctaaacaacgaaatttttatgcaag tcataaccatgctgtgttttcacagATACCCAGTGCTCGAGTCCATCCAAAAATTTCTTTGGCCAAGACTTTGCAAACTCGATCAACGAACACTgtatgc tcataaactctaacaaatcatctgtctgaaaaaccaatatttctttggtagaattctattgtcattactcattactaacagcgaaattaattaacgttct ttttcttactcagGTATGAATTACACTACCAACTGATTACGTTTGGAAAGgtattattgctctaagctttgaatttatcatatggtaatttcaagcattg taggcacctgatcaattatgtgtctaaatcatgtgaattcatgtcagGTATTTTGCACAAAGAGTAGACCAAATTGTAATGCATGTCCAATGAGAGGAGA GTGCAGACACTTTGCCAGTGCTTATGCTAGgtaagcaagctttcatgtacttatatgcaataattaaagataaaatttaggattatgggtaagtaacaaa aaattaggctcagtttcatggtagctagctggaaatagtattacaagaacaacataaagatcaaagacagaatcatggatccatatgcactatcatttta gctcttgtaatccatacatgaacactatatgccaaagtagggatttcaaatatgagattcgatgactgatgccattgtaacagTGCAAGACTTGCTTTAC CGGCACCAGAGGAGAGGAGCTTAACAAGTGCAACTATTCCGGTCCCTCCCGAGTCCTATCCTCCTGTAGCCATCCCGATGATAGAACTACCTCTTCCGTT GGAGAAATCCCTAGCAAGTGGAGCACCATCGAATAGAGAAAACTGTGAACCAATAATTGAAGAGCCGGCCTCGCCCGGGCAAGAGTGCACTGAAATAACC GAGAGTGATATTGAAGATGCTTACTACAATGAGGACCCTGACGAGATCCCAACAATAAAACTCAACATTGAACAGTTTGGAATGACTCTACGGGAACACA TGGAAAGAAACATGGAGCTCCAAGAAGGTGACATGTCCAAGGCTTTGGTTGCTTTGCATCCAACAACTACTTCTATTCCAACTCCCAAACTAAAGAACAT TAGCCGTCTCAGGACAGAGCACCAAGTgtaagctaatatctcctcctatattttatcttccatataaattttggggaaaaaatcgctctccatctggttt tagaacatgcgggtcagccagggttatggcatttttatatatttcaccgatcggcccgagctggctctggttgactcgtatgccaccctgcattgaacaa accagtaggagacaagcaagcaaaacgttttaagataaggtctatggtaaaatgacaaggtaactgataaatgtgtcgtctatttgcagGTACGAGCTCC CAGATTCACATCGTCTCCTTGATGGTgtaagtcaatttttaactctctctatactcgagttgtttcacttgagcaacactgtttaaaagtcctcatttga taaaataacagATGGATAAAAGAGAACCAGATGATCCAAGTCCTTATCTCTTAGCTATATGGACACCAGgtgagaataaaactgcaatgtttcattcatg tgtctacagtatcaaagaaagtacagctagagctaaaaagcatttgaaatagagtcggttaaatatgaaagtttgaatctgtaaatgaaagccggaacgt agcattggtggatgttatatgtaaattagtttttgagattggtctaatgtagttgtttgactgccagGTGAAACAGCGAATTCGGCACAACCGCCTGAAC AGAAGTGTGGAGGGAAAGCGTCTGGCAAAATGTGCTTTGACGAGACTTGTTCTGAGTGTAACAGTCTGAGGGAAGCAAACTCACAGACAGTTCGAGGAAC TCTTCTGgtgagattatcttgatcttttgtgttgctcatgaaaaggagaagtgagaatacaagtttgctaatatcattttttcgtcattcacagATACCT TGTCGGACTGCCATGAGAGGAAGTTTTCCGCTCAACGGGACATATTTCCAAGTCAACGAGgttagatgaaataaaactcaaacagacagacgaaacatta tttctgtttagtgttggttctttatcctccttgccattttttatcttgcagTTATTTGCAGACCACGAGTCCAGTCTCAAACCCATCGATGTTCCTAGAG ATTGGATATGGGATCTCCCAAGAAGGACTGTTTACTTCGGAACATCAGTAACATCAATATTCAGAGgtaaaaacattcgtaatagagttagttaatcaaa tgtccaaaacacaagaaagcttcaccgtccaatacacaagaaagcttcaccttctctttgccaaaaaagatcttagaatgttttgctgaatttgtgcagG TCTTTCAACGGAGCAGATACAGTTCTGCTTTTGGAAAGgtaaacgttaactttcgacccagagaaatccggaaaatctattgctttgttctgatcaatac gttaaacatatacacacacactttacacttaggaccaatactgttctgatctgtgatagaaactggtaaacatctaacaattatgattgcagGATTCGTA TGTGTCCGTGGATTCGAACAGAAGACAAGAGCACCGCGTCCATTAATGGCAAGGTTGCATTTTCCTGCGAGCAAATTGAAGAACAACAAAACCTAAagat gactggaagaaagcaaacgcattgcttctctgctctcctctatttaaagccaggaaaagtcccatttagacataataacaggaatccaaataggctattt tctctttctttcttatttcattcatagagcagaagcgacacaaaaaagttttttgggttatttattttctctctaacaaatttgtagcgttttgggtctt tttctggctgtcactagcgtggcaaatccaatgtctgcgcacacttaggcgcattgtcaataaaatttctccggccaccggagtgtttagcatcttttaa ccggcggctaatgcgaatatttccggtaacacatattccttattctatgttgggttttgtgataacggcagtgggccttactagacaatgatcatcaata aaactaacacaaagttgaatgctacaaagtagaaagtgaagaaaaaataatatagacattgccgaatgccaaccaaaaagaaaagcaaaatcatcaaatc gaacaaagtatttttataattactctcgactcttgagcataataatctctttgattaagcatgaaacattgtttttaataaaatactaaacatgttatat gtta
Border_1 (32448_LBD)
AATCAATTAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTGACACTGAATCCAGGAAACTAC
CATTAGTTCCACCAATGGCATCTCTGATCTCAGAAAACGAGTTTGCGCCACTACTGTTCTGGACAATTTCAGACTCAGAGTCACCTTGCCTCGCATCTCC
AGGATTCTCCAAGTCAAAATTCAAAGCTTTTCTGCAACTTTTGAGTGTGACTTCAGGGCTTTTGTTGCTCATATCTCCAACATTGGCTGGCTTTTTAGTT
GCTGATTCTTTCAAATTTTTCTTTTTGGCACTCCCGGTTTCTTTAGATTTCACTTTTTCCTGAGTTGCAGCTTTGCGTGGCTTCCTTTTAGGTTTGCCTT
CCACGACCACTTTGGGAAGTTCTGCAGGTTTGCGTGGCTTTCTTTTAGGTTTGCCTTCCACGACCACCTTGGGCATGAACTTCCTTTTCCTTTTGGAGGG
TTTCTGCTGAGGAGTTTTGTTAAGGTCGAACTCCAGAACATCTTGTCTGCTGCCATCATTTTGTTCAGTAGCTTCCGTCGCATTAACAGCAGACGAGTCC
ATAATGCTCTGCATACTTTTGTCAGATTTCGGCTCTGGGAATTTCATGTCCAGTAGTTGTAACTATCTGTTCAAGGAATCCAGTCTTTTCACCTGTTCTG
AACAGACTGGGCGTTGACGGTACATATTGAAACGAACTTTCACAGACTGACCCAACTGCTTT
| Start of BLAST Alignment: | NT 546 / Exon 1 of 18 |
| First 15 bp Perfect Match: | NT 550 / Exon 1 of 18 |
BLAST Details: Query Sequence: 32448_LBD Length: (762 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g04560 68418.t00422 DEMETER protein (DME) identical to... 3441 5.5e-150 1 At1g13220 68414.t01372 nuclear matrix constituent protein... 192 0.97 1 >At5g04560 68418.t00422 DEMETER protein (DME) identical to DEMETER protein [Arabidopsis thaliana] GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair protein Length = 9194 Minus Strand HSPs: Score = 3441 (522.3 bits), Expect = 5.5e-150, P = 5.5e-150 Identities = 691/693 (99%), Positives = 691/693 (99%), Strand = Minus / Plus Query: 761 AAGCAGTTGGGTCAGTCTGTGAAAGTTCGTTTCAATATGTACCGTCAACGCCCAGTCTGT 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 AAGCAGTTGGGTCAGTCTGTGAAAGTTCGTTTCAATATGTACCGTCAACGCCCAGTCTGT 1392 Query: 701 TCAGAACAGGTGAAAAGACTGGATTCCTTGAACAGATAGTTACAACTACTGGACATGAAA 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 TCAGAACAGGTGAAAAGACTGGATTCCTTGAACAGATAGTTACAACTACTGGACATGAAA 1452 Query: 641 TTCCCAGAGCCGAAATCTGACAAAAGTATGCAGAGCATTATGGACTCGTCTGCTGTTAAT 582 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 T-CCCAGAGCCGAAATCTGACAAAAGTATGCAGAGCATTATGGACTCGTCTGCTGTTAAT 1511 Query: 581 GCGACGGAAGCTACTGAACAAAATGATGGCAGCAGACAAGATGTTCTGGAGTTCGACCTT 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1512 GCGACGGAAGCTACTGAACAAAATGATGGCAGCAGACAAGATGTTCTGGAGTTCGACCTT 1571 Query: 521 AACAAAACTCCTCAGCAGAAACCCTCCAAAAGGAAAAGGAAGTTCATGCCCAAGGTGGTC 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1572 AACAAAACTCCTCAGCAGAAACCCTCCAAAAGGAAAAGGAAGTTCATGCCCAAGGTGGTC 1631 Query: 461 GTGGAAGGCAAACCTAAAAGAAAGCCACGCAAACCTGCAGAACTTCCCAAAGTGGTCGTG 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1632 GTGGAAGGCAAACCTAAAAGAAAGCCACGCAAACCTGCAGAACTTCCCAAAGTGGTCGTG 1691 Query: 401 GAAGGCAAACCTAAAAGGAAGCCACGCAAAGCTGCAACTCAGGAAAAAGTGAAATCTAAA 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1692 GAAGGCAAACCTAAAAGGAAGCCACGCAAAGCTGCAACTCAGGAAAAAGTGAAATCTAAA 1751 Query: 341 GAAACCGGGAGTGCCAAAAAGAAAAATTTGAAAGAATCAGCAACTAAAAAGCCAGCCAAT 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1752 GAAACCGGGAGTGCCAAAAAGAAAAATTTGAAAGAATCAGCAACTAAAAAGCCAGCCAAT 1811 Query: 281 GTTGGAGATATGAGCAACAAAAGCCCTGAAGTCACACTCAAAAGTTGCAGAAAAGCTTTG 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1812 GTTGGAGATATGAGCAACAAAAGCCCTGAAGTCACACTCAAAAGTTGCAGAAAAGCTTTG 1871 Query: 221 AATTTTGACTTGGAGAATCCTGGAGATGCGAGGCAAGGTGACTCTGAGTCTGAAATTGTC 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1872 AATTTTGACTTGGAGAATCCTGGAGATGCGAGGCAAGGTGACTCTGAGTCTGAAATTGTC 1931 Query: 161 CAGAACAGTAGTGGCGCAAACTCGTTTTCTGAGATCAGAGATGCCATTGGTGGAACTAAT 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1932 CAGAACAGTAGTGGCGCAAACTCGTTTTCTGAGATCAGAGATGCCATTGGTGGAACTAAT 1991 Query: 101 GGTAGTTTCCTGGATTCAGTGTCACAAATTGAC 69 ||||||||||||||||||||||||||||| ||| Sbjct: 1992 GGTAGTTTCCTGGATTCAGTGTCACAAATAGAC 2024 >At1g13220 68414.t01372 nuclear matrix constituent protein-related similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] GI:2190187 Length = 4679 Minus Strand HSPs: Score = 192 (34.9 bits), Expect = 3.5, P = 0.97 Identities = 178/312 (57%), Positives = 178/312 (57%), Strand = Minus / Plus
Border_2 (32448_RBU)
TTTNGCATCACTTACACCAANCTTGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCA
GTTTAAACTATCAGTGTTTGAACTGAAGGCGGGAAACCAGCCAGATAAACTATCTACAGGAGCGAAACTGGCCAGAGACCAACAACCTGATTTATTGACT
AGAAACCAGCAATGCCAGTTCCCAGTGGCAACCCAGAACACCCAGTTCCCAATGGAAAACCAACAAGCTTGGCTTCAGATGAAAAACCAACTTATTGGCT
TTCCATTTGGTAACCAGCAACCTCGCATGACCATAAGAAACCAGCAGCCTTGCTTGGCCATGGGTAATCAACAACCTATGTATCTGATAGGAACTCCACG
GCCTGCATTAGTAAGTGGAAACCAGCAACTAGGAGGTCCCCAAGGAAACAAGCGGCCTATATTTTTGAATCACCAGACTTGTTTACCTGCTGGAAATCAG
CTATATGGATCACCTACAGACATGCATCAACTTGTTATGTCAACCGGAGGGCAACAACATGGACTACTGATAAAAAACCAGCAACCTGGATCATTAATAA
GAGGCCAGCAGCCTTGCGTACCTTTGATTGACCAGCAACCTGCAACTCCAAAAGGTTTTACTCACTTGAATCAGATGGTAGCTACCAGCATGTCATCGCC
TGGGCTTCGA
| Start of BLAST Alignment: | NT 580 / Exon 1 of 18 |
| First 15 bp Perfect Match: | NT 593 / Exon 1 of 18 |
BLAST Details: Query Sequence: 32448_RBU Length: (710 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g04560 68418.t00422 DEMETER protein (DME) identical to... 2911 6.1e-126 1 >At5g04560 68418.t00422 DEMETER protein (DME) identical to DEMETER protein [Arabidopsis thaliana] GI:21743571; contains Pfam profile PF00730: HhH-GPD superfamily base excision DNA repair protein Length = 9194 Plus Strand HSPs: Score = 2911 (442.8 bits), Expect = 6.1e-126, P = 6.1e-126 Identities = 587/593 (98%), Positives = 587/593 (98%), Strand = Plus / Plus Query: 118 TTGAACTGAAGGCGGGAAACCAGCCAGATAAACTATCTACAGGAGCGAAACTGGCCAGAG 177 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 TTGAAGTGTCAATGGGAAACCAGCCAGATAAACTATCTACAGGAGCGAAACTGGCCAGAG 2118 Query: 178 ACCAACAACCTGATTTATTGACTAGAAACCAGCAATGCCAGTTCCCAGTGGCAACCCAGA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2119 ACCAACAACCTGATTTATTGACTAGAAACCAGCAATGCCAGTTCCCAGTGGCAACCCAGA 2178 Query: 238 ACACCCAGTTCCCAATGGAAAACCAACAAGCTTGGCTTCAGATGAAAAACCAACTTATTG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 ACACCCAGTTCCCAATGGAAAACCAACAAGCTTGGCTTCAGATGAAAAACCAACTTATTG 2238 Query: 298 GCTTTCCATTTGGTAACCAGCAACCTCGCATGACCATAAGAAACCAGCAGCCTTGCTTGG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2239 GCTTTCCATTTGGTAACCAGCAACCTCGCATGACCATAAGAAACCAGCAGCCTTGCTTGG 2298 Query: 358 CCATGGGTAATCAACAACCTATGTATCTGATAGGAACTCCACGGCCTGCATTAGTAAGTG 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2299 CCATGGGTAATCAACAACCTATGTATCTGATAGGAACTCCACGGCCTGCATTAGTAAGTG 2358 Query: 418 GAAACCAGCAACTAGGAGGTCCCCAAGGAAACAAGCGGCCTATATTTTTGAATCACCAGA 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2359 GAAACCAGCAACTAGGAGGTCCCCAAGGAAACAAGCGGCCTATATTTTTGAATCACCAGA 2418 Query: 478 CTTGTTTACCTGCTGGAAATCAGCTATATGGATCACCTACAGACATGCATCAACTTGTTA 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2419 CTTGTTTACCTGCTGGAAATCAGCTATATGGATCACCTACAGACATGCATCAACTTGTTA 2478 Query: 538 TGTCAACCGGAGGGCAACAACATGGACTACTGATAAAAAACCAGCAACCTGGATCATTAA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2479 TGTCAACCGGAGGGCAACAACATGGACTACTGATAAAAAACCAGCAACCTGGATCATTAA 2538 Query: 598 TAAGAGGCCAGCAGCCTTGCGTACCTTTGATTGACCAGCAACCTGCAACTCCAAAAGGTT 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2539 TAAGAGGCCAGCAGCCTTGCGTACCTTTGATTGACCAGCAACCTGCAACTCCAAAAGGTT 2598 Query: 658 TTACTCACTTGAATCAGATGGTAGCTACCAGCATGTCATCGCCTGGGCTTCGA 710 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2599 TTACTCACTTGAATCAGATGGTAGCTACCAGCATGTCATCGCCTGGGCTTCGA 2651