At1g01040 SYNGENTA 33842
Genomic Sequence (from TAIR)
tacaaaacagaagcaagcaagtggaaaacagaccagaagagagaggaagacgaagagagaaacagaacagagtagggatcgatagaccgtggaatctcag aatcacaaacactttgcaaaagggttttcaattcctatttatttacaaagaaatcatcaatagtagtggtctctagggttttgcttgctcttcttcgtga cccctttttacctgcaaacaacaacttcaaaattggcgtgtttcgtacggtctatctaaccctaatctgtcacaaaacactcttcttctctcaccccttt ttctgggtttattcaattctcgtgcttttggttctgttttcttctctggggatttggttttcttgagtgagtttttctcctctttcttatgttcttgatt tgattattatatagaattATGGTAATGGAGGATGAGCCTAGAGAAGCCACAATAAAGCCTTCTTATTGGCTAGATGCTTGCGAGGACATCTCTTGTGATC TTATCGATGATCTCGTGTCTGAATTTGATCCTTCCTCTGTTGCTGTCAATGAATCCACTGATGAAAACGGCGTCATCAATGATTTTTTCGGTGGGATTGA TCACATTTTAGATAGTATCAAGAACGGTGGAGGCTTACCAAACAATGGCGTTTCTGATACCAATTCTCAAATCAACGAGGTTACTGTAACTCCTCAGGTT ATTGCTAAGGAGACAGTGAAGGAGAATGGGTTGCAAAAGAATGGCGGTAAGAGAGACGAATTCTCGAAAGAGGAAGGAGACAAGGATAGGAAGAGAGCTA GGGTTTGTAGTTATCAGAGTGAAAGGAGTAACCTTTCAGGTAGAGGGCATGTTAATAATTCTAGGGAGGGAGATAGGTTTATGAATAGGAAACGTACTCG TAATTGGGACGAGGCGGGTAACAATAAGAAGAAAAGGGAATGTAACAATTACAGAAGAGATGGTAGAGATAGAGAAGTTAGGGGTTATTGGGAGAGGGAT AAAGTTGGTTCCAATGAGTTGGTTTATAGGTCAGGGACTTGGGAAGCTGATCATGAAAGAGATGTTAAGAAAGTGAGTGGTGGAAACCGCGAATGCGATG TCAAGGCAGAGGAGAACAAGAGTAAGCCTGAAGAACGTAAAGAGAAGGTTGTGGAAGAGCAAGCAAGGCGATACCAGTTGGATGTTCTTGAACAAGCTAA AGCGAAAAACACGATTGCTTTCCTTGAGACCGGTGCTGGAAAGACACTTATCGCGATTCTTCTTATTAAAAGTGTTCATAAGGATCTGATGAGCCAGAAC AGAAAAATGCTCTCGGTGTTCTTGGTTCCCAAAGTGCCTTTGGTTTATCAGgtaccgcctaataagaaacatgtttgtattcttttttaaaaaattggtt acctattggttttggttggttgatttatcttacgttatcagCAAGCAGAAGTGATCCGTAATCAAACTTGTTTTCAAGTTGGACAT◄TATTGTGGTGAGA TGGGACAGGACT►TTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTA◄AGCAGgttgctttttgatgcttctttttcataccagctttgatcttt tatatgaatcagttcttgaagttaacgagtttttttctattttcttctacgcagGTTCTAGTTATGACAGCACAAATTCTGTTGAATATACTGAGACACA GTATCATTAGAATGGAAACAATTGATCTTCTTATTCTCGACGAGTGTCACCACGCTGTCAAGAAACATCCATACTCTTTAGTGATGTCAGAGTTTTACCA TACAACTCCTAAAGATAAAAGACCTGCCATCTTTGGAATGACTGCTTCGCCTGTTAATTTAAAGGgtactgattgtttcttgtatacagttctctaagct tgccaatgttcttgaaagtgacactttttgtttgtaaacgtagGTGTTTCAAGCCAAGTAGATTGTGCGATAAAGATACGTAACCTCGAGACCAAGTTGG ATTCTACGGTTTGTACTATAAAAGATCGAAAAGAATTAGAGAAACATGTGCCTATGCCTTCAGAGATAGTCGTCGAGTATGACAAAGCTGCTACTATGTG GTCTCTTCATGAGACAATAAAGCAAATGATTGCAGCTGTTGAAGAAGCGGCACAAGCAAGTTCAAGGAAAAGCAAGTGGCAATTTATGGGGGCTAGGGAT GCTGGAGCAAAGGATGAATTGAGACAGGTTTATGGCGTCTCTGAAAGAACGGAGAGCGATGGTGCTGCCAATTTGATTCATAAACTTAGAGCTATCAATT ATACTCTTGCTGAATTGGGTCAATGGTGTGCTTACAAGgtaaaaaaacaacttagtaaatagttttcgataatttgaaatggatatgttattttcatatg atataatttttgtgtcttctttcaagGTGGGACAATCATTCTTGTCTGCTTTGCAAAGTGATGAGAGGGTGAATTTCCAAGTCGACGTGAAGTTTCAAGA ATCATACCTCAGTGAGGTGGTGTCACTCTTGCAATGTGAGCTTCTGGAAGGCGCTGCTGCTGAAAAAGTCGCGGCGGAAGTTGGCAAACCAGAAAATGGT AATGCACATGACGAGATGGAGGAGGGAGAGCTCCCTGATGATCCTGgtaagtattaatcacattctttgtctaatcgctttttaccggttttagaaatcc aatattaacagagctctatggttttagTGGTCTCGGGAGGGGAGCACGTTGATGAAGTAATAGGCGCCGCAGTGGCTGATGGGAAAGTTACTCCAAAAGT ACAATCATTGATCAAACTACTCCTCAAATATCAGCACACAGCTGATTTTCGAGCTATTGTTTTCGTTGAGAGGGTGGTTGCTGCTTTGGTTCTTCCTAAG gttaggattaaagtgaaaaaaacaatttattttcttgtgtataatttttctgcctatgtctctctgagcctggaaattttcagGTTTTTGCGGAGCTGCC TTCGCTTAGTTTTATACGGTGTGCCAGCATGATTGGACACAATAACAGCCAGGAGATGAAATCATCTCAAATGCAGGATACAATTTCCAAATTCCGAGAT GGGCATgtatgattttttttgtctttcattaagacatattttttttttatcttatactgaaatgtcttactatttcctctttctactgtgatagGTGACA CTGTTAGTTGCCACAAGCGTTGCTGAGGAAGGACTTGATATTAGGCAATGTAACGTTGTTATGCGTTTCGACCTTGCAAAGACGGTGCTGGCATACATTC AGTCTCGTGGCCGGGCAAGAAAGCCTGGATCAGACTACATACTCATGGTTGAGAGgtacataaaaagctttaagaactacattttgatttttgtaactac tggtcaccaaatcagtactgatatgtcaacttgtgttacttgcagAGGAAATGTATCTCACGCAGCGTTCCTAAGGAATGCTAGGAACAGTGAGGAGACA CTTCGAAAAGAAGCAATAGAAAGGACTGATCTTAGTCATCTCAAAGATACATCGAGATTAATCTCAATTGATGCTGTGCCTGGTACAGTTTATAAGGTGG AGGCAACTGGTGCCATGGTTAGCTTGAATTCCGCGGTTGGTCTTGTACATTTCTACTGCTCTCAGCTTCCTGGTGACAGgtaagtttgccgataattttt attgtcctaatgacctctccttttcctgtatgagatgatggattgcttctctctcgtgtctcagGTATGCAATCCTTCGTCCTGAGTTTAGCATGGAGAA GCATGAAAAGCCTGGGGGCCACACGGAATATTCATGTAGGCTTCAGCTTCCTTGCAATGCACCGTTTGAAATACTTGAGGGTCCTGTTTGCAGTTCAATG CGTCTTGCACAACAGgtggacataatagtttgtttgtttatcttacttgttattttctttcagtgttccatgtcttgaagtattgcgtgtttgatatgta gGCTGTATGTTTAGCTGCTTGCAAGAAACTGCATGAGATGGGTGCATTTACCGATATGCTATTACCGGACAAAGGAAGTGGTCAAGACGCTGAGAAGGCT GACCAAGATGATGAAGGTGAGCCTGTTCCTGGAACTGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCGGATGTACTTAAGgtaatattagcactaa cctatgaaatttttgctaaatgtgcttttagaggaatgtggttttcaatatttgactgtttataccatgcacagGGAGAATGGGTTTCATCTGGAAAGGA AGTTTGTGAGAGCTCAAAGCTATTCCATTTATACATGTATAATGTCAGATGTGTAGATTTTGGCTCTTCAAAAGATCCATTCCTAAGCGAAGTTTCAGAG TTCGCGATTCTTTTTGGCAATGAGCTGGATGCAGAGgttgttgtttctctctccatggatttgagtattagaatttgaagatgtaaccatggttaactaa gatttgttttactgtatcagGTATTATCGATGTCTATGGATCTTTATGTTGCTCGGGCCATGATCACTAAAGCATCTCTTGCTTTCAAGGGATCACTTGA TATTACAGAAAACCAGgttagactgaacaacaacctctatttttcctaacatttatgtttgcttgagaaactttttatcttatattggtggcatttcttg tgcagCTATCATCTCTAAAAAAGTTTCATGTGAGGTTAATGAGTATCGTGTTGGATGTTGATGTTGAACCCTCCACGACACCATGGGATCCTGCAAAGGC CTACCTGTTTGTCCCTGTTACTGACAATACGTCTATGGAACCCATAAAAGGGATCAACTGGGAATTGGTTGAAAAGATTACGAAAACCACAGCGTGGGAC AACCCTCTTCAGAGAGCTCGTCCCGATGTATATCTCGGGACTAATGAGAGAACTCTTGGTGGGGACAGAAGGGAATATGGGTTTGGTAAACTTCGTCACA ACATTGTATTTGGGCAGAAATCTCACCCAACTTATGGTATTAGAGGAGCTGTTGCATCCTTCGATGTTGTGAGAGCTTCTGGATTGTTACCTGTGAGAGA TGCTTTTGAGAAGGAAGTAGAAGAGGATTTATCAAAAGGAAAATTGATGATGGCTGATGGGTGCATGGTTGCAGAAGATCTTATTGGGAAAATAGTGACA GCCGCACATTCCGGGAAGCGGTTTTACGTAGATTCAATTTGTTATGACATGAGTGCAGAAACATCTTTCCCTAGGAAAGAGGGATATCTTGGTCCCCTAG AGTACAACACGTACGCTGACTATTACAAGCAAAAgtaagaaaacatcttcaaataattttttgatttcttcaatcctttttctaagtttcattagatact aatacttttctaatatcacgaggacttacatggcctcaagtcacctgtggtgttgtgcaagaaggagaagcaaagtctgtctatgtattatgagatagct acttctatggctaggatatatgttgtacaagaccggcttttcttctacttcttgcacaacctgaggttattgaggctatacaagtcttcttctataatgt tatttattagGTATGGAGTTGATTTGAACTGTAAGCAACAACCTTTGATTAAAGGACGTGGTGTTTCGTATTGCAAGAACCTTCTTTCTCCTCGGTTTGA ACAGTCAGgttataagaaattcttttcactttaacaatttaatgatataaccgataaattaacgcttctttgttttttcttgcaattcaaagGTGAATCT GAGACAGTCCTTGATAAGACATATTACGTGTTTCTTCCACCTGAACTATGCGTTGTGCATCCGCTTTCGGGTTCACTTATCCGAGGTGCTCAGAGGTTAC CCTCTATAATGAGAAGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTATTCCCACATCAAAGgtatatatatatatatt atgcttagtgtcttttttttttttgttgaaactatctaatcatatttggtatatatatgtagATTCTTGAAGCCTTGACTGCCGCCTCGTGCCAGGAAAC GTTCTGCTACGAGAGAGCTGAGCTTTTAGGAGATGCGTATCTAAAATGGGTTGTTAGTCGTTTTCTGTTTCTCAAGTATCCTCAAAAGCACGAGGGTCAG CTTACAAGGATGAGGCAACAAATGGTTAGTAATATGGTTCTTTATCAGTTTGCTCTGGTTAAAGGGCTTCAGTCATATATCCAGGCGGATCGATTCGCCC CGTCTAGGTGGTCTGCTCCTGGTGTGCCTCCGGTTTTCGACGAGGACACAAAAGATGGAGGATCTTCGTTTTTCGATGAAGAGCAAAAACCTGTTTCCGA GGAAAACAGCGATGTGTTTGAAGATGGGGAGATGGAGGATGGTGAACTAGAGGGTGATTTGAGTTCGTACCGAGTTTTATCTAGCAAAACGTTAGCTGAT GTTGTTGAGGCTTTGATTGGTGTTTATTACGTCGAAGGGGGTAAGATTGCAGCTAATCATTTGATGAAATGGATTGGGATTCACGTGGAGGATGATCCTG ATGAAGTCGATGGAACATTGAAAAATGTTAATGTTCCAGAGAGTGTGCTCAAGAGCATCGACTTTGTTGGTCTTGAGAGAGCTCTTAAATATGAGTTTAA AGAGAAAGGTCTTCTTGTTGAAGCTATAACACATGCTTCAAGACCATCTTCAGGTGTTTCGTGTTACCAGAGATTGGAATTTGTTGGTGACGCGGTCTTG GATCATCTCATCACAAGACATCTATTTTTCACATACACAAGCCTTCCTCCTGGTCGGTTAACAGATCTTCGAGCTGCAGCGGTTAACAACGAGAATTTTG CTCGCGTTGCGGTTAAACATAAACTCCACTTGTACCTTCGTCACGGTTCAAGCGCCCTCGAAAAACAGgtaaacaagattaagaaacaaagtatattgtt ctcaaagagtttcaaatgtttgactgtttggttactttttgtttttcagATTCGGGAATTTGTGAAGGAGGTTCAAACCGAGTCATCGAAACCGGGGTTT AACTCTTTTGGTTTGGGAGACTGCAAAGCACCAAAAGTTCTTGGAGACATTGTTGAATCTATTGCAGGTGCTATTTTTCTTGATAGTGGAAAAGATACAA CTGCTGCTTGGAAGgttagttagttagttatttcggttgaaaatctctaactaactcgtttttttttggaattgtaattcttagcttactaaatcgtatg attcttttccagGTTTTTCAACCTTTGCTTCAGCCCATGGTGACACCAGAGACACTTCCAATGCATCCGGTGCGAGAGCTACAAGAGCGGTGCCAGCAAC AAGCAGAAGGGTTAGAATACAAAGCGAGTAGGAGTGGTAACACAGCGACTGTGGAAGTTTTCATCGACGGTGTTCAAGTTGGAGTAGCGCAAAACCCGCA GAAGAAAATGGCTCAAAAGCTAGCTGCGAGGAACGCACTTGCAGCTTTGAAAGAGAAAGAAATAGCAGAATCAAAGGAGAAGCATATCAACAACGGTAAT GCGGGAGAGGATCAAGGCGAGAATGAGAATGGGAACAAGAAGAATGGGCATCAGCCGTTTACGAGACAAACGTTGAATGATATTTGTTTGAGGAAGAATT GGCCAATGCCTTCTTACAGgtaacaacaatttaatagaaagtgggtaaacaaatcaattttgggctttattgagcttatttcgggtttgtggtgaatttt gtagATGTGTGAAAGAAGGAGGACCGGCTCATGCAAAGAGATTTACGTTTGGGGTAAGAGTTAATACGAGCGATAGAGGATGGACCGATGAGTGTATTGG CGAGCCAATGCCGAGTGTTAAGAAAGCTAAGGATTCAGCTGCGGTTCTTCTACTTGAGCTTTTAAATAAAACTTTTTCTTGAttcttttactctcttcaa cgagatgtagtcattacattttaaaccttaaaaccatagtggttgtagtgttttaattgatctgttgttattcgagtttaattggtttatagaactcttc aaacaaattaaaccaaaaatttcaatgccaagaaagggtctttaaaacgaaattacagaaggaccaaatgataaggaagaaaaatgcagagataaaagta atatcaattaggatcatatgcttcttattatcaatgaaaagtaacagaaacatagatgctgcagaaatcttctgaggagaagctTCAACGCCTCAGGGTG TGGAGAATGTATTCAGCATAGAGGTCCctgtaatggggaattcagaatccagagttgctttaatgttacaaactaaaaaagatgtaagagagtttggttc ttg
Border_1 (33842_RB_LB_D)
CCCTCTGACACGCCAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTA
AACTATCAGTGTTTAATGAATATCGGTGTTTTGGTTTTTTCTTGTGGCCGTCTTTGTTTATATTGAGATTTTTCAAATCAGTGCGCAAGACGTGACGTAA
GTATCCGAGTCAGTTTTTATTTTTCTACTAATTTGGTCGTTTATTTCGGCGTGTAGGACATGGCAACCGGGCCTGAATTTCGCGGGTATTCTGTTTCTAT
TCCAACTTTTTCTTGATCCGCAGCCATTAACGACTTTTGAATAGATACGCTGACACGCCAAGCCTCGCTAGTCAAAAGTGTACCAAACAACGCTTTACAG
CAAGAACGGAATGCGCGTGACGCTCGCGGTGACTCCATTTCGCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAAT
ACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTATATGTCCAACTTGAAAACAAGTTTG
ATTACGGATCACTTCTGCTTGCTGATAACGTAAGATAAATCAACCAACCAAAACCAATAGGTAACCAATTTTTTAAAAAAGAATACAAACATGTTTCTTA
TTAGGCGGTACCTGATAAACCAAAGGCACTTTGGGAACCAAGAACACCGAGAGCATTTTTCTGTTCTGGCTCATAGATCCTTATGAACACTTTTAATAAG
AAGAATCGCGATAAGTGTCTTTCCAGCACCGGTCTCAAGGAAAGCAATCGTGTTTTTCGCTTTAGCTTGTTCAAGAACATCCAACTGGTATCGCCTTGCT
TGCTCTTCCACAACCTTCTCTTTACGTTCTTCAGGCTTACTCTTGTTCTCCTCTGCCTTGACATCGCATTCGCGGTTTCCCCACTCACTTTCTTAACATC
TCTTTCATGATCAGCTTCCCAAGTCCCTGACCTATAAACCAACTCATTGGAACCAACTTTATCCCTCTCCCAATAACCCCTAACTTNTCTATCTCTACCA
TCTCTTCTGTAATTGNTACATTCCCTTTTCTTCTTATTGNTACCCGCCTCGCCCAATTACGAAGACGTTTCCTATTCATAAACCTATCTCCCTCCTAGAA
ATATTAACATGCCCTCTACCTGNAAGGTACTCCTTTCCTNT
| Start of BLAST Alignment: | NT 1132 / Exon 2 of 20 |
| First 15 bp Perfect Match: | NT 1068 / Exon 2 of 20 |
BLAST Details: Query Sequence: 33842_RB_LB_D Length: (1241 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g01040 68414.t00004 DEAD/DEAH box helicase carpel fact... 3214 8.5e-140 1 At3g03300 68416.t00296 DEAD/DEAH box helicase carpel fact... 309 2.9e-05 1 At3g07110 68416.t00766 60S ribosomal protein L13A (RPL13a... 219 0.29 1 At3g11410 68416.t01247 protein phosphatase 2C, putative /... 211 0.57 1 >At1g01040 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 8019 Minus Strand HSPs: Score = 3214 (488.3 bits), Expect = 8.5e-140, P = 8.5e-140 Identities = 690/738 (93%), Positives = 690/738 (93%), Strand = Minus / Plus Query: 1241 ANAG-GAAAGGAGTA-CCTTNCAGGTAGAGGGCATGTTAATATTTCTAGG-AGGGAGATA 1185 | || |||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||| Sbjct: 771 AGAGTGAAAGGAGTAACCTTTCAGGTAGAGGGCATGTTAATAATTCTAGGGAGGGAGATA 830 Query: 1184 GGTTTATGAATAGGAAACGTCTTCGTAATTGGG-CGAGGCGGGTANCAATAAGAAGAAAA 1126 |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct: 831 GGTTTATGAATAGGAAACGTACTCGTAATTGGGACGAGGCGGGTAACAATAAGAAGAAAA 890 Query: 1125 GGGAATGTANCAATTACAGAAGAGATGGTAGAGATAGANAAGTTAGGGGTTATTGGGAGA 1066 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 891 GGGAATGTAACAATTACAGAAGAGATGGTAGAGATAGAGAAGTTAGGGGTTATTGGGAGA 950 Query: 1065 GGGATAAAGTTGGTTCCAATGAGTTGGTTTATAGGTCAGGGACTTGGGAAGCTGATCATG 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 951 GGGATAAAGTTGGTTCCAATGAGTTGGTTTATAGGTCAGGGACTTGGGAAGCTGATCATG 1010 Query: 1005 AAAGAGATGTTAAGAAAGTGAGTGG-GGAAACCGCGAATGCGATGTCAAGGCAGAGGAGA 947 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1011 AAAGAGATGTTAAGAAAGTGAGTGGTGGAAACCGCGAATGCGATGTCAAGGCAGAGGAGA 1070 Query: 946 ACAAGAGTAAGCCTGAAGAACGTAAAGAGAAGGTTGTGGAAGAGCAAGCAAGGCGATACC 887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1071 ACAAGAGTAAGCCTGAAGAACGTAAAGAGAAGGTTGTGGAAGAGCAAGCAAGGCGATACC 1130 Query: 886 AGTTGGATGTTCTTGAACAAGCTAAAGCGAAAAACACGATTGCTTTCCTTGAGACCGGTG 827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1131 AGTTGGATGTTCTTGAACAAGCTAAAGCGAAAAACACGATTGCTTTCCTTGAGACCGGTG 1190 Query: 826 CTGGAAAGACACTTATCGCGATTCTTCTTATTAAAAGTGTTCATAAGGATCT-ATGAGCC 768 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1191 CTGGAAAGACACTTATCGCGATTCTTCTTATTAAAAGTGTTCATAAGGATCTGATGAGCC 1250 Query: 767 AGAACAGAAAAATGCTCTCGGTGTTCTTGGTTCCCAAAGTGCCTTTGGTTTATCAGGTAC 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 AGAACAGAAAAATGCTCTCGGTGTTCTTGGTTCCCAAAGTGCCTTTGGTTTATCAGGTAC 1310 Query: 707 CGCCTAATAAGAAACATGTTTGTATTCTTTTTTAAAAAATTGGTTACCTATTGGTTTTGG 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 CGCCTAATAAGAAACATGTTTGTATTCTTTTTTAAAAAATTGGTTACCTATTGGTTTTGG 1370 Query: 647 TTGGTTGATTTATCTTACGTTATCAGCAAGCAGAAGTGATCCGTAATCAAACTTGTTTTC 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1371 TTGGTTGATTTATCTTACGTTATCAGCAAGCAGAAGTGATCCGTAATCAAACTTGTTTTC 1430 Query: 587 AAGTTGGACATATACTGAATTAACGCCGAATTGAATTCGATTTGGTGTATCGAGATTGGT 528 ||||||||||| || || | | | | | | | || || | |||| ||| Sbjct: 1431 AAGTTGGACAT-TATTGTGGTGAGATGGGACAGGACTT--TTGGGATTCTCGAAGGTGGC 1487 Query: 527 TATGAAATTCAGATGCTA 510 | || | | || ||| Sbjct: 1488 AACGAGAGTTTGAGTCTA 1505 >At3g03300 68416.t00296 DEAD/DEAH box helicase carpel factory-related similar to RNA helicase GB:AAF03534 Length = 6808 Minus Strand HSPs: Score = 309 (52.4 bits), Expect = 2.9e-05, P = 2.9e-05 Identities = 121/186 (65%), Positives = 121/186 (65%), Strand = Minus / Plus
Border_2 (33842_LB1U)
CCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAMTGTGTTATTAAGTTGTCTAAGCGKCAATTTGTTTCCACCACAATATGTC
AGTCTTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAACGCAGGTTGCTTTTTGATGCTTCTTTTTCATACCAGCTTTGATCTTTTATATGAAT
CAGTTCTTGAGAGGCTAACGAGTTGTTCTTCTATTTCTTCTACGCAGGATCTAGTTATGACAGCACAAATTCTGTTGTTGAATATACTGAGACNCAGTAT
CATTAGAANGGAAACAATTGATCTTNTTCTCTCNTNNGGAACATNCAACTGGTATCGCCTTGCTTGCTCTTCCACAACCTTCTCTTTACGTTCTTCAGGC
TTACTCTTGNTCTTCTCNCTC
| Start of BLAST Alignment: | NT 1093 / Exon 2 of 20 |
| First 15 bp Perfect Match: | NT 1093 / Exon 2 of 20 |
BLAST Details: Query Sequence: 33842_LB1U Length: (421 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g01040 68414.t00004 DEAD/DEAH box helicase carpel fact... 963 1.0e-37 1 >At1g01040 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] Length = 8019 Plus Strand HSPs: Score = 963 (150.5 bits), Expect = 1.0e-37, P = 1.0e-37 Identities = 215/231 (93%), Positives = 215/231 (93%), Strand = Plus / Plus Query: 105 TTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAACGCAGGTTGCTTTTTGATGC 164 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1467 TTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAA-GCAGGTTGCTTTTTGATGC 1525 Query: 165 TTCTTTTTCATACCAGCTTTGATCTTTTATATGAATCAGTTCTTGAGAGGCTAACGAGTT 224 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 1526 TTCTTTTTCATACCAGCTTTGATCTTTTATATGAATCAGTTCTTGA-AGT-TAACGAGTT 1583 Query: 225 GTTCTTCTATTT-CTTCTACGCAGGATCTAGTTATGACAGCACAAATTCTGTTGTTGAAT 283 || |||||||| |||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 1584 TTT-TTCTATTTTCTTCTACGCAGGTTCTAGTTATGACAGCACAAATTCTGTTG---AAT 1639 Query: 284 ATACTGAGACNCAGTATCATTAGAANGGAAACAATTGATCTTNTTCT-CTC 333 |||||||||| |||||||||||||| |||||||||||||||| || | ||| Sbjct: 1640 ATACTGAGACACAGTATCATTAGAATGGAAACAATTGATCTTCTTATTCTC 1690