At1g04635 SYNGENTA 34540
Genomic Sequence (from TAIR)
CACCCGGTGGCGGACCATCCTGAAGCAGCGGCATATCCTTCACACTCGCCATTCCTGGCTTATTTCTTATCATCGCCTCCGTCATcttcaacgctcaatt tcttctcgaccaaattgacttttgatcactgaatccgatttgattttgctgaaatcgagtgttctagggattccgatgaacaacgaagggaacgttggag attaactaggctaggaccatataactaagcccattagttagcaaatcacggagtcgtatgagatgaaatgggctataactaagcccatttcagatatgtt caaagacccaagtccataagtaagcaagtcacgtggagtcacgtgattatcttcttcttcttcttacatataaaatgccctaactacatgttcagaatat ctttagccgccgacttggtatcatcaaatcgaggagattcgaagaagcATGGTGGGATTTAAGAACAGATACATGTTAATGGAAGTTTTTCTGGATCCGG ACAAGGATCTTCTCGGAGAAGGAACACCGATCATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCG◄TCAATTTC◄GGCGAGT►G TGGTCTAGGTT►CGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACGAAGCTATGCATTGTAAGATCATCAAGAGAAGAACACAGACAAGT TTGGTTAGCAATCACATTGGTCAAAAGCATCGGAAACTGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCAGAGCGTGTAGAGACACAGCC TTGAAGTGCGACAAGGAGAAGTTTGAGCAGTGTAGCAAAAGCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGG AAAACTGAaacttttctagaccttttttccttcgaatttgacccctaagttttgaaattgtacaatctttgtatttttcttaattctgaaatacaaaggg ataagaaacagcatcattccctgaaaagattgtttgcgatttgaatcactgggtttttatatgttggaattaaaataagagggtgtgaattgttgagata tgttctagataaggcgtaattctgtgaaaattgaaaacttaagggtacaagtgcaaagtcgttgaattttgaagcttttaataaatccaaaatttctaat ctggagagaacctatctctgaggtccaaactcttcggtggaggagaagaactgaaacggtaatctagctcttcaaagcctcttactttaccgattacttg ctcttgtaccatgtatacgatcatttatatgggtttttatcggttacggtaatcctccgtgtctttttctttgtgtatgcatgttaagtgttcgataaa
Border_1 (34540_LB2U)
ATTGGTAATTG:CGAGGATACTGTCTTTGATTGCTTTCGAGAGATTGAATTGTGTAAGAATGATCGGTGTTCCTTCTCCGAGAAGATCCTTGTCCGGATC
CAGAAAAACTTCCATTAACATGTATCTGTTCTTAAATCCCACCATGCTTCTTCGAATCTCCTCGATTTGATGATACCAAGTCGGCGGCTAAAGATATTCT
GAACATGTAGTTAGGGCATTTTATATGTAAGAAGAAGAAGAAGATAATCACGTGACTCCACGTGACTTGCTTACTTATGGACTTGGGTCTTTGAACATAT
CTGAAATGGGCTTAGTTATAGCCCATTTCATCTCATACGACTCCGTGATTTGCTAACTAATGGGCTTAGTTATATGGTCCTAGCCTAGTTAATCTCCAAC
GTTCCCTTCGTTGTTCATCGGAATCCCTAGAACACTCGATTTCAGCAAAATCAAATCGGATTCAGTGATCAAAAGTCAATTTGGTCGAGAAGAAATTGAG
CGTTGAAGATGACGGAGGCGATGATAAGAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCCGCTGCTTCAGGATGGTCCGCCACCGGGTGGGTTCGC
ACCGGTCCGATATGCCCGCCGGATATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTTGGGGAATGTACCAGGTC
GGCCAGGGAAACAAAATCCGCAGGTAAGAACGACTTGTAATAGCTCGTTCACATTTCAATTTTTCCTCTAAAA
| Start of BLAST Alignment: | NT 141 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 133 / Exon 1 of 1 |
BLAST Details: Query Sequence: 34540_LB2U Length: (772 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g04630 68414.t00406 expressed protein 1785 4.8e-76 1 At2g33220 68415.t03764 expressed protein 960 9.4e-39 1 At1g04635 68414.t00407 ribonuclease P family protein / Rp... 861 5.1e-34 1 At1g03060 68414.t00243 WD-40 repeat family protein / beig... 187 0.998 1 >At1g04635 68414.t00407 ribonuclease P family protein / Rpp14 family protein contains Pfam profile: PF01900 Rpp14 family Length = 682 Minus Strand HSPs: Score = 861 (135.2 bits), Expect = 5.1e-34, P = 5.1e-34 Identities = 175/177 (98%), Positives = 175/177 (98%), Strand = Minus / Plus Query: 180 ACTTGGTATCATCAAATCGAGGAGATTCGAAGAAGCATGGTGGGATTTAAGAACAGATAC 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ACTTGGTATCATCAAATCGAGGAGATTCGAAGAAGCATGGTGGGATTTAAGAACAGATAC 60 Query: 120 ATGTTAATGGAAGTTTTTCTGGATCCGGACAAGGATCTTCTCGGAGAAGGAACACCGATC 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ATGTTAATGGAAGTTTTTCTGGATCCGGACAAGGATCTTCTCGGAGAAGGAACACCGATC 120 Query: 60 ATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCG-CAATTAC 5 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 121 ATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCGTCAATTTC 177 >At1g04630 68414.t00406 expressed protein Length = 1343 Plus Strand HSPs: Score = 1785 (273.9 bits), Expect = 4.8e-76, P = 4.8e-76 Identities = 357/357 (100%), Positives = 357/357 (100%), Strand = Plus / Plus
Border_2 (34540_LB1D)
ATCTKAWTTTYATA:ACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTA
AGCGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACGAAGCTATGCATTGTAAGATCATCAAGAGAAGAACACAGACAAGTTTGGTTAGCA
ATCACATTGGTCAAAAGCATCGGAAAC:TGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCAGAGCGTGTAGAGACACAGCCTTGAAGTGC
GACAAGGAGAAGTTTGAGCAGTGTAGCAAAAGCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGGAAAACTGAA
ACTTTTCTAGACCTTTTTTCCTTCGAATTTGACCCCTAAGTTTTGAAATTGTACAATCTTTGTATTTTTCTTAATTCTGAAATACAAAGGGATAAGAAAC
AGCATCATTCCCTGAAAAGATTGTTTGCGATTTGAATCACTGGGTTTTTATATGTTGGAATTAAAATAAGAGGGTGTGAATTGTTGAGATATGTTCTAGA
TAAGGCGTAATTCTGTGAAAATTGAAAACTTAAGGGTACAAGTGCAAAGTCGTTGAATTTTGAAGCTTTTAATAAATCCAAAATTTCTAATCTGGAGAGA
ACCTATCTCTGAGGTCAHTTTTTTTCGGTGGAGGAGAAGAACTGAAACGGT
| Start of BLAST Alignment: | NT 148 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 160 / Exon 1 of 1 |
BLAST Details: Query Sequence: 34540_LB1D Length: (749 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g04635 68414.t00407 ribonuclease P family protein / Rp... 2442 2.0e-105 1 At1g04640 68414.t00408 biotin/lipoate A/B protein ligase ... 339 1.7e-07 1 At2g35870 68415.t04068 expressed protein 171 0.50 1 At1g56350 68414.t05931 peptide chain release factor, puta... 200 0.74 1 >At1g04635 68414.t00407 ribonuclease P family protein / Rpp14 family protein contains Pfam profile: PF01900 Rpp14 family Length = 682 Plus Strand HSPs: Score = 2442 (372.4 bits), Expect = 2.0e-105, P = 2.0e-105 Identities = 494/498 (99%), Positives = 494/498 (99%), Strand = Plus / Plus Query: 92 GTTGTCTAAG--CGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACGAAGC 149 || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 GTGGTCTAGGTTCGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACGAAGC 244 Query: 150 TATGCATTGTAAGATCATCAAGAGAAGAACACAGACAAGTTTGGTTAGCAATCACATTGG 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 TATGCATTGTAAGATCATCAAGAGAAGAACACAGACAAGTTTGGTTAGCAATCACATTGG 304 Query: 210 TCAAAAGCATCGGAAACTGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCA 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 TCAAAAGCATCGGAAACTGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCA 364 Query: 270 GAGCGTGTAGAGACACAGCCTTGAAGTGCGACAAGGAGAAGTTTGAGCAGTGTAGCAAAA 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 GAGCGTGTAGAGACACAGCCTTGAAGTGCGACAAGGAGAAGTTTGAGCAGTGTAGCAAAA 424 Query: 330 GCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGG 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 GCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGG 484 Query: 390 AAAACTGAAACTTTTCTAGACCTTTTTTCCTTCGAATTTGACCCCTAAGTTTTGAAATTG 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 AAAACTGAAACTTTTCTAGACCTTTTTTCCTTCGAATTTGACCCCTAAGTTTTGAAATTG 544 Query: 450 TACAATCTTTGTATTTTTCTTAATTCTGAAATACAAAGGGATAAGAAACAGCATCATTCC 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 TACAATCTTTGTATTTTTCTTAATTCTGAAATACAAAGGGATAAGAAACAGCATCATTCC 604 Query: 510 CTGAAAAGATTGTTTGCGATTTGAATCACTGGGTTTTTATATGTTGGAATTAAAATAAGA 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 605 CTGAAAAGATTGTTTGCGATTTGAATCACTGGGTTTTTATATGTTGGAATTAAAATAAGA 664 Query: 570 GGGTGTGAATTGTTGAGA 587 |||||||||||||||||| Sbjct: 665 GGGTGTGAATTGTTGAGA 682 >At1g04640 68414.t00408 biotin/lipoate A/B protein ligase family protein similar to lipoyltransferase (LIP2p) [Arabidopsis thaliana] GI:15887052; contains Pfam profile PF03099: Biotin/lipoate A/B protein ligase family Length = 1278 Plus Strand HSPs: Score = 339 (56.9 bits), Expect = 1.7e-07, P = 1.7e-07 Identities = 72/78 (92%), Positives = 72/78 (92%), Strand = Plus / Plus Query: 672 AAATCCAAAATTTCTAATCTGGAGAGAACCTATCTCTGAGGTCAHTTTTTTTCGGTGGAG 731 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 1 AAATCCAAAATTTCTAATCTGGAGAGAACCTATCTCTGAGGTCCAAACTCTTCGGTGGAG 60 Query: 732 GAGAAGAACTGAAACGGT 749 |||||||||||||||||| Sbjct: 61 GAGAAGAACTGAAACGGT 78