At3g61780 SYNGENTA 34740
Genomic Sequence (from TAIR)
gccttgtctctgtaaccatggttatctgtaattagggttttctctgacgataaacttggggttgttcttatgtatctctctctgtctttctcatgtcatg gaggtttttttattataaaatatatagttcattacaattctgctatatctggaggaaaaacgtaaaatgttgaaccttttacttttatcaactgtagtgt tcataaatttatgtaatgcttgtgttgtgtccacgaaacgacgacgtttcatcattgttctgttaaacccagcttttggaacttggaagtgatgagcttt atatctggaaaatgtaaaatgttgaaccttttttcaactgtagtgttgttcaaaggcgttagctttgtttaagaaacgacgacgtttcatcattgttctg ttaaacccagcttttgggggttttctcactcggaagtgagctttatccctttggtttccatcaATGGAGGTTCTACTAAACTCCAATGATGGTTTCTTCA ATTTCTCGTCTTTCTCGTCCAATTCGAACAGGAGACTCGCTAACCAACGTCGATTCAACTTGCCCATCTCCAAATTCCACTACTATCGCGTTTCAATTCT CCGAGTCTCGGCTCGGTTCGGAGAGACCTCGAGGCGACGTAATTCGCTGAGGAAGAAGATCATCGGTGATGAGTATTGGCGTTCGACTCCGAAATCTTCT GAACCAGGTACGAAACCTCTAAACGAAAGCCATAAGTTTGGTCACTGTGATGATTTAAGTAGCACCGAGGGATTGAAAGATAGGGTTGCTCAAGATTCAA ATTTGCTGAATGAGCTTGAAGATTGGGTTGCTCGGTATAACAAGGAAGCAGAGTTTTGGGGTATTGGTTCGAATCCCATTTTCACTGTCTATCAGGATTC TGTTGGAAACGTAGAGAAAGTAGAGGTTGATGAAGACGAGGTCTTGAGTAGAAGAAGATCAGCTCTTGGGGATTTGGAATCAGTGAGTTCTAAGCTTGTA TATGCGAAGAAATTAGCTGAACAAATGGAGAATGGGGAACATGTGATCCATAAGGAGAGTTCTCTTGTCAAGTTCGTTTCTTCTTCTTCTTCTTCAGAGG AAGAGTTTCGTCTCGTTAGCTCAGTCCAAAACGCAATTCTTCGTCTTGACTTAATTCCAAAGTTGCCGGCGATTGGAAGAGCTGTTTTGTGTGGTTACAT TGGACTCTGGTTGCTGAAGACGGTGCTTGTGTATAGGAAGAGTAATGAGGTTGAGTGTACAGAGTTGGAGAAGGAGATGATGAGGAGAAAGATGAAAGCT TGGCAGGAAAGGGATATGTCGGAGAAAGGTACCGTGGAAGTTTTGCACAAGGAGGGTTTGGAAAAGCCATTGATGTCATTTGAGAAGCCTAAGTTTGATC GAAATGAACTTATGACTAGTATTTCTAAAGTTAAGGGTTCAGAGAAGAAACTGGAACTCGTGAATTCTCCTCATGTTGAGCTGGACTTTGTTGATAAGAT CCATGAAATCAAAGCAATGGCTAGACGAGCACGGGAGATAGAAGCTGGCATAGAACTTAATGAAAAGCAGAAGCTCGATGTGAACAAAGAAACAGGCGAC AATGAGGAAGATATAAGCATTCAGTCACAGAAGAGTCTTCCACATGAGGCTTTGACACACAGTGAAGGTGATGATGATAAAGATGAACGCTTGGGAACTT CGACTGACAGTGAGAACACTGAACTTTCTGGTTTTGCTGTTCCGATGTTGAATGGGGCTATGGTAGATTTTGGTTTTCTGAATCATGAAATGGCAGCATC TGACAAAGAAAAGGTGAGTAATGTGGTACCACCAGTTCCTACAGACGGAGTCATCCAATCTTCTGATGTCTCTAAGGATCAGTTAAGTATGATGAAGAAT AGCACTGGTCGTAAGTCACGGGTCATACGGTCTGTAAAAGAGGCTAAAGAGTTCCTTTCAAGAAGAAGTGGTGAGAAAGAGCTTACTCAGGAACCTTCTC AGATGATAGCCCAAGATAGTGTTGAAATCTTCTCAAAGCAGAGCGACGAAGAGCGTGGTGTAGCTAGAAAACACGAATTGGTTGACAAAAATAAAATCCT TGGTGCAGCTGTCAATGGAACCTTGAAATCTGCACTTGAGTCTACTTCTTCTGAACCGTTGGGGAAGGATGCTGATTGTCAACCCCAAAAGAATGATTAC CAAAAACTCTCAGAACCTGGGAATGCAGTTAAGGGATCGAGCAAGCAAATAAATTCTTCAAATAAAATCGAAGAGCACAATTTTAAATTTGCCAAAAGTT CTTCTGGTGGTACTGAACATATAGAGAAGGAAGAACCATCAGGGAAGGGGAATTGGATAGAGAATAACTACCATGAATTTGAGCCTGTTGTTGAAAAAAT GAGAGCAGGATTTAGGGATAATTATATGGCTGCTAGAGAGGGTGAAACTCGGGAGCCAGGTACAATTGCTGAAATTGCAGAACTTTACCGCAGTGAGTAT AATGATGAGCTTGAGTGGATGAAGGACGAGAAGCTAAGGGACATTGTCTTCCATGTTCGAGATAATGAGCTGGCTGGTAGGGATCCATTTCACCTGATTG ATGATGAAGATAAAGCTATGTTTTTGCAAGGCTTGGAGAAGAAAGTTGAGAAAGAAAATGAGAAACTGTCTCATCTGCATCAGTGGATTCATTCAAACAT TGAAAACCTTGACTACGGAGTAGgtaatcttctacaactttgattgagactcagtttgctcaatatcttacgtacacaaattatgcattaatcagcttgt caaaatatatctcaaccatctcccttcctcttattattcagATGGCGTCAGTGTGTATGATCCACTAGAAAAGATCATACCGAGATGGAAAGGGCCTTCA CTTGATAAGAACCCCGAGTTTCTCAATAACTATCATGAACAGCGTGAAGCACTGTTTTCTGAAAAAGCTGCATCTGTATCTCCTGTGAAATATGAAGAAC AGAGCTCTCATCAGGAATTATCAGAGTCTGCTTCCTCTGAGAACACTCTCACCCCTTCATCTGAAATTACCTCAAGCCAGCCAAAGATTGTTGTAGAAGG AAGTGATGGATCTGTTAGACCTGGTAAAAAATCAGGAAAGGAGTATTGGCAGCACACGAAGAAGTGGTCACGTGGGTTCCTTGAGTTGTACAATGCAGAG ACTGATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGACTTAGACCGATGGATTACTGAAGACGAAATCAAAGACGCTGCTGATATAATGGAAA AGCTGCCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTCAACAAACTCAAGAGAGAGATGGAGTTGTTTGGTCCTCAAGCTGTTTTGAGCAAATACCG CGAGTATGGAGAAGATAAGGAAGAAGATTATC◄TA◄TGGTGGTTGGACCTTCCGCATGTACTGgtatgttttcctgctaaacagttgactgacattggag aaacacaaaagtccttgaaaatctgatatgtcttttcatgttttagTGCCTTGAGTTGTACACAGTTGATGAAAACGGAGAGCAGCAAGTAGGGTTCTAC ACATTGGAGATGGCAACAGATCTCGAGTTAGAACCCAAACCACATCATGTGATTGCTTTCGAGGACGCTGCAGACTGTCGAAACCTCTGTTACATTATTC AAGCTCATTTGGATATGCTACGAAGTGGAAACGTTTTCATTGTTCCGCGCCCGCCAAAGgtaatgaatttagccaatgaagaaactttaactagacgtgt ttctgttatcaattcaaagttgttctctttaacctacacagGATGCATATCGAGAAGCCAAGGCGAATGGATTTGGTGTAACGGTTATTAGGAAAGGAGA ACTGAAGTTGAATATTGACGAGCCATTAGAAGAAGTAGAGGAAGAGATCTGTGAGATAGGAAGCAAGATGTACCATGATAAGATCATGGGAGAACGATCT GTGGATATAAGCTCGTTGATGAAAGGTGTCTTTAACCTGAAGACCAAACCTACTGGCCGAAGAAGAAAACGATCAAAGCAGGCTCTTAAAGATTCTAACA AGAAAAGTAGCTGAggcaccaatccaaagggcctatagcaaacagagattggaggcaaacttagaaatgatagctgagggtactttcgtagttcgttatg ttgattcgtccagcgaatttgggctacttctttcttcgttacatatgttaattcgttcaacgaatttgggcccttttatgcacaagaaatccaaaggact gaaaaggctcaaatccatattttttgggcttacaaaatgcccattcccacaatctcccccaaataaatagcttctattttcgtgtatgatagacacatgt tgtgtgttttaaaccttgcctttttgattgatcataggttggttagagagagagtatgtgatcctactttagttcttggatcaccaaa►gcgtatt►agt cagttcttcttaaaccctctaagagacccacaaaaatttgttgttgtcgattatctgttctaagatagtctgtctctaacatgcttaatctgttgtgcag tttg
Border_1 (34740_AbB_U)
TCTTCTCGNAAAACAGCTTGGTGCAGCCGNCCGCGTGCAGTTCGGCCCGTTGGTTGGTCAAGTCCTGGTCGTCGGTGCTGACGCGGGCATAGCCCAGCAG
GCCAGCGGCGGCGCTCTTGTTCATGGCGTAATGTCTCCGGTTCTAGTCGCAAGTATTCTACTTTATGCGACTAAAACACGCGACAAGAAAACGCCAGGAA
AAGGGCAGGGCGGCAGCCTGTCGCGTAACTTAGGACTTGTGCGACATGTCGTTTTCAGAAGACGGCTGCACTGAACGTCAGAAGCCGACTGCACTATAGC
AGCGGAGGGGTTGGATCCTGATCACAGGCAGCAACGCTCTGTCATCGTTACAATCAACATGCTACCCTCCGCGAGATCATCCGTGTTTCAAACCCGGCAG
CTTAGTTGCCGTTCTTCCGAATAGCATCGGTAACATGAGCAAAGTCTGCCGCCTTACAACGGCTCTCCCGCTGACGCCGTCCCGGACTGATGGGCTGCCT
GTATCGAGTGGTGATTTTGTGCCGAGCTGCCGGTCGGGGAGCTGTTGGCTGGCTGGTGGATAATCTTCTTCCTTATCTTCTCCATACTCGCGGTATTTGC
TCAAAACAGCTTGAGGACCAAACAACTCCATCTCTCTCTTGAGTTTGTTGAGTTTCTTTTCCATGAACTTCTTGTTCCTCTCTGGCAGCTTTTCCATTAT
ATCAGCAGCGTCTTTGATTTCGTCTTCAGTAANCCATCGNTNCTAAGTCTTTTCCCA
| Start of BLAST Alignment: | NT 2971 / Exon 2 of 4 |
| First 15 bp Perfect Match: | NT 2969 / Exon 2 of 4 |
BLAST Details: Query Sequence: 34740_AbB_U Length: (757 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g61780 68416.t06402 expressed protein ; expression sup... 967 4.7e-38 1 At5g28320 68418.t03132 expressed protein This is likely a... 904 3.8e-35 1 At5g28400 68418.t03141 expressed protein 904 3.8e-35 1 >At3g61780 68416.t06402 expressed protein ; expression supported by MPSS Length = 3649 Minus Strand HSPs: Score = 967 (151.1 bits), Expect = 4.7e-38, P = 4.7e-38 Identities = 197/201 (98%), Positives = 197/201 (98%), Strand = Minus / Plus Query: 757 TGGGAAAAGACTTAGNANCGATGGNTTACTGAAGACGAAATCAAAGACGCTGCTGATATA 698 ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 2772 TGGGAAAAGACTTAG-ACCGATGGATTACTGAAGACGAAATCAAAGACGCTGCTGATATA 2830 Query: 697 ATGGAAAAGCTGCCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTCAACAAACTCAAG 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2831 ATGGAAAAGCTGCCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTCAACAAACTCAAG 2890 Query: 637 AGAGAGATGGAGTTGTTTGGTCCTCAAGCTGTTTTGAGCAAATACCGCGAGTATGGAGAA 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2891 AGAGAGATGGAGTTGTTTGGTCCTCAAGCTGTTTTGAGCAAATACCGCGAGTATGGAGAA 2950 Query: 577 GATAAGGAAGAAGATTATCCA 557 ||||||||||||||||||| | Sbjct: 2951 GATAAGGAAGAAGATTATCTA 2971 >At5g28320 68418.t03132 expressed protein This is likely a pseudogene. Length = 4207 Minus Strand HSPs: Score = 904 (141.7 bits), Expect = 3.8e-35, P = 3.8e-35 Identities = 190/201 (94%), Positives = 190/201 (94%), Strand = Minus / Plus
Border_2 (34740_LBD)
ATTSWATTCARTTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGC
GGAAAAGTCAGTTCTTCTTAAACCCTCTAAGAGACCCACAAAAATTTGTTGTTGTCGATTATCTGTTCTAAGATAGTCTGTCTCTAACATGCNTTAATCT
GTTGTGCAGTTTGAGAGTTACAGTAAGTTACTGATGCATTAAGTCACTAAACATGTCATCATCATAAAGATTTGCATTGGTTTAAACAAAAACAAGCTCT
CATTGCATATTCAGGGAATACAAAAAACGCAAAAAAGAACCCTCAAGGAAGAAGAAATAAAGAGTTTACTTAATTTAAAGAGTTWTCTACAAACAAGAGA
TTTAGAGAGGTTCAAGGTATTCACACATATGGCTACACAAAATCAGTAATCCTTTTGCCTCACTAAGCTGTCCTCTTCCGGTTTGGTCAATAGGCTTGTC
TCCAGCTGATAGGCTTGTCCAAAGCCATAGTGAGCTTGGAATG
| Start of BLAST Alignment: | NT > 374 / Downstream |
| First 15 bp Perfect Match: | NT > 381 / Downstream |
BLAST Details: Query Sequence: 34740_LBD Length: (543 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F15G16 67319 2179 3.0e-92 1 F21F14 67320 2179 3.0e-92 1 F2A19 67318 315 4.8e-08 1 F2O15 67888 212 0.31 1 F15G16 67319 Length = 104,868 Minus Strand HSPs: Score = 2179 (333.0 bits), Expect = 3.0e-92, P = 3.0e-92 Identities = 440/445 (98%), Positives = 441/445 (99%), Strand = Minus / Plus Query: 543 CATTCCAAGCTCACTATGGCTTTGGACAAGCCTATCAGCTGGAGACAAGCCTATTGACCA 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78356 CATTCCAAGCTCACTATGGCTTTGGACAAGCCTATCAGCTGGAGACAAGCCTATTGACCA 78415 Query: 483 AACCGGAAGAGGACAGCTTAGTGAGGCAAAAGGATTACTGATTTTGTGTAGCCATATGTG 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78416 AACCGGAAGAGGACAGCTTAGTGAGGCAAAAGGATTACTGATTTTGTGTAGCCATATGTG 78475 Query: 423 TGAATACCTTGAACCTCTCTAAATCTCTTGTTTGTAGAWAACTCTTTAAATTAAGTAAAC 364 ||||||||||||||||||||||||||||||||||||||+||||||||||||||||||||| Sbjct: 78476 TGAATACCTTGAACCTCTCTAAATCTCTTGTTTGTAGAAAACTCTTTAAATTAAGTAAAC 78535 Query: 363 TCTTTATTTCTTCTTCCTTGAGGGTTCTTTTTTGCGTTTTTTGTATTCCCTGAATATGCA 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78536 TCTTTATTTCTTCTTCCTTGAGGGTTCTTTTTTGCGTTTTTTGTATTCCCTGAATATGCA 78595 Query: 303 ATGAGAGCTTGTTTTTGTTTAAACCAATGCAAATCTTTATGATGATGACATGTTTAGTGA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78596 ATGAGAGCTTGTTTTTGTTTAAACCAATGCAAATCTTTATGATGATGACATGTTTAGTGA 78655 Query: 243 CTTAATGCATCAGTAACTTACTGTAACTCTCAAACTGCACAACAGATTAANGCATGTTAG 184 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 78656 CTTAATGCATCAGTAACTTACTGTAACTCTCAAACTGCACAACAGATTAA-GCATGTTAG 78714 Query: 183 AGACAGACTATCTTAGAACAGATAATCGACAACAACAAATTTTTGTGGGTCTCTTAGAGG 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78715 AGACAGACTATCTTAGAACAGATAATCGACAACAACAAATTTTTGTGGGTCTCTTAGAGG 78774 Query: 123 GTTTAAGAAGAACTGACTTTTCCGC 99 |||||||||||||||||| | ||| Sbjct: 78775 GTTTAAGAAGAACTGACTAATACGC 78799 Score = 364 (60.7 bits), Expect = 3.0e-10, P = 3.0e-10 Identities = 130/185 (70%), Positives = 130/185 (70%), Strand = Minus / Plus Query: 375 AATTAAGTAAACTCTTTATTTCTTCTTCCTTGAGGGTTCT-TTTTTGCGT-TTTTTGTAT 318 ||| || |||||||| |||||||||||||| || || | ||||| | ||||||||| Sbjct: 77742 AATAGAGAAAACTCTTG-TTTCTTCTTCCTTGTGGCTTTTATTTTTTTGAGTTTTTGTAT 77800 Query: 317 TCCCTGAATATGCAATGAGAGCTTGTTTTTGTTTAAACCAATGCAAATCTTTATGATGAT 258 ||||||| ||||||||||||||| |||| ||||||| | | ||| | ||| || Sbjct: 77801 TCCCTGAGAATGCAATGAGAGCTTCTTTT-GTTTAAAGCGTTT-AAAGCA--ATGC--AT 77854 Query: 257 GACATGTTTAGTGACTTAATGCATCAGTA-ACTTACTGTAACTCTCAAACTGCACAACAG 199 |||||||| ||||||| |||| | | || || || | || | | | || Sbjct: 77855 GACATGTTCAGTGACTGC-TGCAGAAACACACACACACACACACACACAAAGTTAACCAT 77913 Query: 198 ATTAA 194 | ||| Sbjct: 77914 AATAA 77918 F21F14 67320 Length = 142,001 Minus Strand HSPs: Score = 2179 (333.0 bits), Expect = 3.0e-92, P = 3.0e-92 Identities = 440/445 (98%), Positives = 441/445 (99%), Strand = Minus / Plus