At5g57590 SYNGENTA 36172
Genomic Sequence (from TAIR)
atcgaatttgatttatctcttacttatggttgtgtattgtatatctgtaatcagGCCTTTTAGATTACCTGGAATTCTTGTTGGAGATGGGCGGCTTGGT GGTATCTCAGGGACTATTGCAGCTTACGAGAGTTTAAAACTTCGAGGATATGATATTGCTGCTGTTGTTTTTGAAGATCATGGCCTTGTTAATGAAGTTC CATTAACTTCATATCTAAGGAATAAGTAAtttttcagtggctttatcagtttatgtgctttcgattcctgtgtgttttttattaggagcgagctcatagt ttaacttttcgtattcggattctggttggtagggtgccggtgcttgtgcttccgcctgttcccaaggacccttcagatgatcttattgaatggtttgtcg aatccgatggtgttttcaaagctttgaaagaaacaATGGTGTTAGCTAATTTGGAGAGATTGGAAAGATTAAATGGCATGGCTAAGCTAGCAGGAGAGGT TTTCTGGTGGCCATTTACTCAGCATAAACTTGTGCATCAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACAAGgtttgt ctggtcatatgcattctgattacctggaaggcataactctatggtttctcatatctaatggaactatcttctgtcatcatttttagGCTTCCGATAACAG TTCTCTTAGCCAGCAATTTGATGCTTGTGCAAGCTGGTGGACACAGGGGCCAGATCCTACTTTCCAGgtcatctgtgcccattatttcccagttttatga caaatatcagttccacgtgcattattatgtcatagattttaatgcttacctctctttgtgatgaatcttctgaagtttattttgaaattttgtttaggct gtttcagGCTGAGCTTGCTAGAGAAATGGGTTACACTGCTGCTAGGTTTGGGCATGTTATGTTCCCTGAGAATGTATATGAACCTGCCTTGAAGTGCGCT GAGCTGTTATTAGATGGAGTGGGAAAAGgtttctaaacttgctctgtcacattgtttaattttcaaacattgggggatggttaattattttatgcatgca gGCTGGGCTTCTCGAGTATACTTCTCGGATAATGGATCCACAGCAATCGAAATTGCCTTGAAGATGGCATTTCGTAAGTTTTGTGTCGATCATAATTTTT GCGAGGCTACAGAAGAGGAAAAGCATATTGTGGTTAAGgtacaattatcttgctaatgctcaatgatactttgacacttcgttgtacctggtattgaaca tttgttttccactttgctgcttactaatatgcaatgcaagttcctagctgatcatcatttttcatatgcaagagtatcttcatctatctaattttgtcat ttgcggtaaaggttctaatgcgaaaatttgatgtgtgttatatcttagGTCATAGCTCTTCGGGGGTCTTACCATGGAGATACTTTAGGAGCAATGGAAG CACAAGCACCATCACCTTATACAGGCTTTCTCCAGCAGCCGTGgtagggaaccttttcatttgtttgccatttctggagaattttgtttccaacattcat cttctgatttaaccattcttggatcatttgcatctcctgcactaattcatcatttgcatagcaacaaacccttagtgttgcttagatgggttgtcatccc ttagggataaatcagccctttttcacatcttcccaaattgtcttgagcaagcattctttatcatgttattcagcttgtcctttagttaggctcaaatcta tttttggattgtagGTATACTGGAAGAGGCTTGTT◄TCTGGAT◄CC►TCCTACTGTCTTTCTCTCCAATGGATCCTGGAATATCTCCCTCCCTGAAAGTT TTTCTGAAATAGCCCCAGAATATGGAAgtaaatagcatcctttcccatctctctgatatcctccggtacatttcctttagttgcatgatttagtattccc aaactcttacagCCTTCACCAGCCGTGATGAGATTTTTGACAAGAGTAGAGACGCATCAACTCTTGCAAGAATATATTCGGCCTATTTATCGAAGCATTT ACAAGAGCATTCTGGAGTTAGGCAATCTGCCCATGTTGGAGCACTGATAATAGAACCAGGTACACTCGCCAGTATGACTTCACATAGTTTACgtatgtaa cttaactatattcagtaagtttagcatccttggtttatctagctagattgctatatgcaaactactcttttattaagttggcggttttatctgcagTAAT TCATGGTGCTGGGGGAATGCATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGAAGTG TTCACAGGATTCTGGCGTCTTGGAGTAGAGgtagtaattaatgtaatcttttgatatatttctgttactacattctatttacgttctgctaacaaattac cgtaattttaccaagACTACTACTGAACTTCTCGGTTGCAAACCGGACATAGCGTGCTTTGCCAAATTGTTGACTGGTGGAATGGTTCCTTTGGCTGTCA CTCTTGCCACAGATGCTGTATTCGATTCATTTTCTGGAGATTCTAAGgtaaagtgaaagtagtatcaaaaccatattcaagcatttctgacaccgcttga agccatctaattttccttacttggttgtagCTTAAAGCCTTGCTTCATGGTCACTCATACTCAGCTCATGCTATGGGTTGCGCAACAGCCGCCAAAGCCA TCCAATGGTTCAAAGATCCAGAGACTAACCACAACATCACTTCACAAGGAAAAACTTTAAGAGAGgtattagtacaactaaacatgctcttcatctttat agtatacgcgagtccagattcgtagaccagtatgttgcaatcaataacaaaatcagccattactcttggtatcaattaatcctttaaaatttgcagCTGT GGGACGAAGAACTGGTGCAACAAATATCATCTCACTCTGCGGTTCAAAGGGTGGTTGTAATAGGAACCCTTTTCGCTCTAGAACTAAAAGCAGATGCTTC CAATTCAGGgtaatcttctcaagtaacataatatttgttctcttgaattgtcaccattagacaaaatgtcttgaacacaaactttggtacaatttctctg cgtgtttcagGTATGCTTCGTTGTATGCAAAGTCTCTTCTAATAATGCTTCGGGAAGACGGTATCTTTACCCGGCCTCTTGGAAACGTTATCTATCTCAT GTGTGGCCCTTGCACCTCGCCGGAAATTTGCCGCCGGTTGCTCACGAAGCTCTACAAAAGGCTCGGAGAATTCAATAGAACATGAaacccaaaactctct ctccagcttattttgttgtcatctctgtatctgttgcatattttaatgacatatggaatctgaattttctattggtaggtagatctatggaattcttttc ttttctttttttcccttcacgagatctatcggtttatggaaattagtataaagatatcggacaccaaatttaatgcaagatcagtttcatactaatagac aaaaaagaaaaatattctgtaataattcttttgatgaagtaaaaagttgccttaaagtgtaaagatgagtcctacatggatctacggctgagattcatcg gacaaagactaatgaccactgtttctcttagtgggccctagcagacgttagtttttaactaaaaacgacaatcatagcagaccacgataaaataaaaaca cgt
Border_1 (36172_LB2U)
ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGGAACAAGCCTC
TTCCAGTATACCTACAATCCAAAAATAGATTTGAGCCTAACTAAAGGACAAGCTGAATAACATGATAAAGAATGCTTGCTCAAGACAATTTGGGAAGATG
TGAAAAAGGGCTGATTTATCCCTAAGGGATGACGACCCATCATAAGCAACACTAAGGGTTTGTTGCTATGCAAATGATGAATTAGTGCAGGAGATGCAAA
TGATCCAAGAATGGTTAAATCAGAAGATGAATGTTGGAAACAAAATTCTCCAGAAATGGCAAACAAATGAAAAGGTTCCCTACCACGGCTGCTGGAGAAA
GCCTGTATAAGGTGATGGTGCTTGTGCTTCCATTGCTCCTAAAGTATCTCCATGGCAAGACCCCCGAAGAGCTATGACCTAAGATATAACACACATCAAA
TTTTCGCATTAGAACCTTTACCGCAAATGACAAAATTAGATAGATGAAGATACTCTTGCATATGAAAAATGATGATCAGCTAGGAACTTGCATTGCATAT
TAGTAAGCAGCAAAGTGGAAAACAAATGTTCAATACCAGGTACAACGAAGTGTCAAAGTATCATTGAGCATTAGCAAGATAATTGTACCTTAACCACAAT
ATGCTTTTCCTCTTCTGTAGCCTCGCAAAAATTATGAT
| Start of BLAST Alignment: | NT 1407 / Exon 6 of 12 |
| First 15 bp Perfect Match: | NT 1400 / Exon 6 of 12 |
BLAST Details: Query Sequence: 36172_LB2U Length: (738 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g57590 68418.t06674 aminotransferase class III family ... 3224 2.2e-141 1 At1g50400 68414.t05171 porin family protein low similarit... 212 0.28 1 At3g56080 68416.t05770 dehydration-responsive protein-rel... 197 0.83 1 At4g27960 68417.t03725 ubiquitin-conjugating enzyme E2-17... 194 0.89 1 >At5g57590 68418.t06674 aminotransferase class III family protein low similarity to 7,8-diaminopelargonic acid aminotransferase BioA [Mesorhizobium loti] GI:12044306; contains Pfam profile PF00202: aminotransferase, class III Length = 3032 Minus Strand HSPs: Score = 3224 (489.8 bits), Expect = 2.2e-141, P = 2.2e-141 Identities = 650/655 (99%), Positives = 650/655 (99%), Strand = Minus / Plus Query: 738 ATCATAATTTTTGCGAGGCTACAGAAGAGGAAAAGCATATTGTGGTTAAGGTACAATTAT 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 ATCATAATTTTTGCGAGGCTACAGAAGAGGAAAAGCATATTGTGGTTAAGGTACAATTAT 813 Query: 678 CTTGCTAATGCTCAATGATACTTTGACACTTCGTTGTACCTGGTATTGAACATTTGTTTT 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 CTTGCTAATGCTCAATGATACTTTGACACTTCGTTGTACCTGGTATTGAACATTTGTTTT 873 Query: 618 CCACTTTGCTGCTTACTAATATGCAATGCAAGTTCCTAGCTGATCATCATTTTTCATATG 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 CCACTTTGCTGCTTACTAATATGCAATGCAAGTTCCTAGCTGATCATCATTTTTCATATG 933 Query: 558 CAAGAGTATCTTCATCTATCTAATTTTGTCATTTGCGGTAAAGGTTCTAATGCGAAAATT 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 CAAGAGTATCTTCATCTATCTAATTTTGTCATTTGCGGTAAAGGTTCTAATGCGAAAATT 993 Query: 498 TGATGTGTGTTATATCTTAGGTCATAGCTCTTCGGGGGTCTTGCCATGGAGATACTTTAG 439 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 994 TGATGTGTGTTATATCTTAGGTCATAGCTCTTCGGGGGTCTTACCATGGAGATACTTTAG 1053 Query: 438 GAGCAATGGAAGCACAAGCACCATCACCTTATACAGGCTTTCTCCAGCAGCCGTGGTAGG 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1054 GAGCAATGGAAGCACAAGCACCATCACCTTATACAGGCTTTCTCCAGCAGCCGTGGTAGG 1113 Query: 378 GAACCTTTTCATTTGTTTGCCATTTCTGGAGAATTTTGTTTCCAACATTCATCTTCTGAT 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 GAACCTTTTCATTTGTTTGCCATTTCTGGAGAATTTTGTTTCCAACATTCATCTTCTGAT 1173 Query: 318 TTAACCATTCTTGGATCATTTGCATCTCCTGCACTAATTCATCATTTGCATAGCAACAAA 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 TTAACCATTCTTGGATCATTTGCATCTCCTGCACTAATTCATCATTTGCATAGCAACAAA 1233 Query: 258 CCCTTAGTGTTGCTTATGATGGGTCGTCATCCCTTAGGGATAAATCAGCCCTTTTTCACA 199 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1234 CCCTTAGTGTTGCTTA-GATGGGTTGTCATCCCTTAGGGATAAATCAGCCCTTTTTCACA 1292 Query: 198 TCTTCCCAAATTGTCTTGAGCAAGCATTCTTTATCATGTTATTCAGCTTGTCCTTTAGTT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 TCTTCCCAAATTGTCTTGAGCAAGCATTCTTTATCATGTTATTCAGCTTGTCCTTTAGTT 1352 Query: 138 AGGCTCAAATCTATTTTTGGATTGTAGGTATACTGGAAGAGGCTTGTTCCAGGAT 84 |||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 1353 AGGCTCAAATCTATTTTTGGATTGTAGGTATACTGGAAGAGGCTTGTTTCTGGAT 1407 >At1g50400 68414.t05171 porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin Length = 2168 Minus Strand HSPs: Score = 212 (37.9 bits), Expect = 0.33, P = 0.28 Identities = 170/286 (59%), Positives = 170/286 (59%), Strand = Minus / Plus
Border_2 (36172_LB1D)
TTGTTTCCTACTGTCTTTCTCTCCAATGGATCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGAAATAGCCCCAGAATATGGAAGTAAATAGCATCCTT
TCCCATCTCTCTGATATCCTCCGGTACATTTCCTTTAGTTGCATGATTTAGTATTCCCAAACTCTTACAGCCTTCACCAGCCGTGATGAGATTTTTGACA
AGAGTAGAGACGCATCAACTCTTGCAAGAATATATTCGGCCTATTTATCGAAGCATTTACAAGAGCATTCTGGAGTTAGGCAATCTGCCCATGTTGGAGC
ACTGATAATAGAACCAGGTACACTCGCCAGTATGACTTCACATAGTTTACGTATGTAACTTAACTATATTCAGTAAGTTTAGCATCCTTTGGTTTATCTA
GCTAGATTGCTATATGCAAACTACTCTTTTATTAAGTTGGCGGTTTTATCTGCAGTAATTCATGGTGCTGGGGGAATGCATATGGTTGATCCGCTTTTCC
AACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCATTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGGTAGTAATTAA
TGNAATCTTTTGATATATTTCTGGTACTACATTCTATTTACGTTCTGCT
| Start of BLAST Alignment: | NT 1409 / Exon 6 of 12 |
| First 15 bp Perfect Match: | NT 1409 / Exon 6 of 12 |
BLAST Details: Query Sequence: 36172_LB1D Length: (649 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g57590 68418.t06674 aminotransferase class III family ... 3189 8.2e-140 1 >At5g57590 68418.t06674 aminotransferase class III family protein low similarity to 7,8-diaminopelargonic acid aminotransferase BioA [Mesorhizobium loti] GI:12044306; contains Pfam profile PF00202: aminotransferase, class III Length = 3032 Plus Strand HSPs: Score = 3189 (484.5 bits), Expect = 8.2e-140, P = 8.2e-140 Identities = 641/644 (99%), Positives = 641/644 (99%), Strand = Plus / Plus Query: 6 TCCTACTGTCTTTCTCTCCAATGGATCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGA 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1410 TCCTACTGTCTTTCTCTCCAATGGATCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGA 1469 Query: 66 AATAGCCCCAGAATATGGAAGTAAATAGCATCCTTTCCCATCTCTCTGATATCCTCCGGT 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1470 AATAGCCCCAGAATATGGAAGTAAATAGCATCCTTTCCCATCTCTCTGATATCCTCCGGT 1529 Query: 126 ACATTTCCTTTAGTTGCATGATTTAGTATTCCCAAACTCTTACAGCCTTCACCAGCCGTG 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1530 ACATTTCCTTTAGTTGCATGATTTAGTATTCCCAAACTCTTACAGCCTTCACCAGCCGTG 1589 Query: 186 ATGAGATTTTTGACAAGAGTAGAGACGCATCAACTCTTGCAAGAATATATTCGGCCTATT 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1590 ATGAGATTTTTGACAAGAGTAGAGACGCATCAACTCTTGCAAGAATATATTCGGCCTATT 1649 Query: 246 TATCGAAGCATTTACAAGAGCATTCTGGAGTTAGGCAATCTGCCCATGTTGGAGCACTGA 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1650 TATCGAAGCATTTACAAGAGCATTCTGGAGTTAGGCAATCTGCCCATGTTGGAGCACTGA 1709 Query: 306 TAATAGAACCAGGTACACTCGCCAGTATGACTTCACATAGTTTACGTATGTAACTTAACT 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1710 TAATAGAACCAGGTACACTCGCCAGTATGACTTCACATAGTTTACGTATGTAACTTAACT 1769 Query: 366 ATATTCAGTAAGTTTAGCATCCTTTGGTTTATCTAGCTAGATTGCTATATGCAAACTACT 425 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1770 ATATTCAGTAAGTTTAGCATCCTT-GGTTTATCTAGCTAGATTGCTATATGCAAACTACT 1828 Query: 426 CTTTTATTAAGTTGGCGGTTTTATCTGCAGTAATTCATGGTGCTGGGGGAATGCATATGG 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1829 CTTTTATTAAGTTGGCGGTTTTATCTGCAGTAATTCATGGTGCTGGGGGAATGCATATGG 1888 Query: 486 TTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1889 TTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATTCCAGTCA 1948 Query: 546 TTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGGTAGTAATTAATGNAA 605 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1949 TTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGGTAGTAATTAATGTAA 2008 Query: 606 TCTTTTGATATATTTCTGGTACTACATTCTATTTACGTTCTGCT 649 |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2009 TCTTTTGATATATTTCTGTTACTACATTCTATTTACGTTCTGCT 2052