At5g56930 SYNGENTA 36637
Genomic Sequence (from TAIR)
CTTCCCGTCTCTTGGAGATCTGCTATCAGCAGCCATAACCCTAAAAAATGGCCGATTTTTGCATCCAAATCTCGACAGTCTGATACGTACAACCATgttt ctcctcccttttcaccggaaaaaaatcgaaatgatcagagctggctaagagagatagagagagtgagaaattccaatttcgaaaactctgaatccataaa tcttttagggtttggatccttattacgacgccgtttgttgaaggattcattgggcctacaaaatcaggaagcccattaacatcaaagatgatacaagccc aataaagatttttaaatcgtccaccgccacaagacggcctttctccggcgaaagacaagccgaagttgagcctatcggtactggttgagattattctccg gcggagacaATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCTGCCGAATCGAAATTATCGCTCTTTGCTTTATCACTTTTGCTCGAGTT TCGATCGGGAGCCTCAAATTTCTCTTGCCACACCGGCAGTTCTCCAGGAGCTGGTCTTACGAACAGgtcagtgttcgattcgaagtcaaagttcttagga atgattaattcatcttctagtaatcaaaattcaaagttcatctgttgcttgaaattgcctgaaactatttctgatgctatttgtgttttcttacatagAA ATTGCTCAAGAGTCTCCGGGAGAAACTTGCGAACCGCCGGAGAATTTATCAATTACGGAATCAAAACTCAATGGAGTGTCTGGTGATTCAAGTGGTGAGA AGGTGGAAACAATTTCACAGGAAAAGAGTTTGATGCTTGGAGATATTTGTGATGGAATTGACTTGCAAGATGCATCTGTTGTTAGTAGACACACAGATTT TTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGATTCTGTTCCAGAAAGTTGTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGACATT GTCCAAAATGTCCTGGAGAAGCCTAATATTGCAACTCAAGTTCAAGTAGATCCAGTTGAAAGTGAGAAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAAT CTAATGAGGTTATAAGTTCTGGAGTTTTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACCTGTTGATAATAGTCCGGTTTTGGT AGATTCTGTGTCTCGGATAGTTGGAGGTGATGATGTAGAAGAAGGAGAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAACAGTC GAAAGACATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCC◄ATCTCACTAGTCA►TAAGAGTTTTGGTGTTGAGGTAATGAATGTAGATAA TCAA◄GCCAAGAAGATTGATCAAACTTTCAGTAACGAAGCAAAGgtatccaatattaaagaatcttgttatgttatgttgcttaggtgttaataaaatct gacttgtattttaacttgcagATGGATCCTGGAACCTCCATCAAAAAAAGGTCTGCGCCTTCTAAGGATGCAAAAGCCAGAAAGAGGgtaatgtagtgta tgcatttctttgacatattacggggatatcttacaatcattttgtgtgtggagtaagatgtttacttactgataagctatttcatgcagGCAAAAGCTAG GATAAAAAGAGCTCAAGAGCGTATAGCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATCAAGTATTGTCGACACTAT CTCAAGGGGCGGTGCCATGAGgtctacacaacggctttggattataaatatttctttggatttaaaagttttgtttgctgatgcacttgtttttcttctt ttgtagGGAGATAAATGCAAATTTTCACATGATACAATACCGGAAACCAAATGTTCGgtaagattactgtttcaagagataacttattttctcaagttta aatagctgggtcatctccttggtctctaatactcgtgtcttcttgttgtttcagCCTTGCTGCTACTTTGCAACCCAGTCATGTATGAAAGGAGATGATT GTCCTTTCGACCATGATCTCTCCAAATACCCTTGCAATAATTTCATTACTAAAGGTTTCTGCTACAGGGGTGATAGTTGTTTGTTTTCGCATAAGgtaaa aaccaatctctcgatcttctcatgattcttcttccagagtctaataacttattgatcttttgatcctactatactaatcttcacttaacagGGTACTCCA CAATCTGCTTCAGACACGCCGAGTGCAAATGTAACAGTCTCGTCTACTAAGATCACTGCAGCGTCTTTCTCGCCTCAGAAAACAAAAAAACAATCCGTGA GAGATGCCATAGCCAAATTACCGGCGATCCAAGCAAGAGTTTCAAGCTCTGTTGCGTTTTTGAAGCCCTCAAGTCATTCTAACCAACGAAACTCATCTGA TGCATCATCTTCAAAGATCAATGAACATGTAACGCCTCCACAGGTTCCTCCTTTGAGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTA GACAAAACCTCACAAGAGGATACGGTGAAAGCGTCTTCTGCGTCCAAGCCAAACACAGACAACTCTGATAGTCAGACATTGAAGCAGTCACAACAGGGAA GCTTTCTCCCTCTGGGGCCTCCAAAAGGAATAAGTTTCTTATCATTTGCATCAGAAGAACAAAAAACTCTGAATCGAGAGCCTCAAAAACCAGCAAGTAG TAAAAATCTCAAGACTACGCCTAGCTCACACATTCAAAGTTCTCTACTCTCAGCCATGAAACTCGCTGCAGAATTCGAATCCGCTAAAGTTGAACGAGGC AACAATGATCCAACAGAAGCTGTAAATAAGAGCAATGTTACTGTTGACACGGCTGTAACCAGAAACTCAGGGAACATATCTTCCAAGATTCTCGAGTTCT TGTCGAGCTTCAGCCACGGCAAAAACTGAtcttaatttggtttttgagataaaagttatacttcatgtagatgaaacagagcatcaatatttaaagctat tgatctctcgtaaaatttcacgggagtgataactttgatgtagataattattgtattggtctatgaataaggtttattcggttgaataatctcaaaagtc tgaagaaatccaagttttgctcaatttgttttcgatgatccaatcagatcagtttagtgtaagacttgaaactgttatttttggcttatttatccatttg taaggataaaaatagctacggttgggattttgtttgcaacttttgttatcagattttaattaaacaacatctttcgagcatgtttacagccaaacaatac atgtttaggaagacataagggaaacggagtgggtggtgcactggtgctgtattactataagactatatattctcatgcaaaattacgtagaacgtaaaat tag
Border_1 (36637_LBU)
ATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGGTATGT
GGGCTATTACCAGTTCCATCTTGTGAGACCTGATACTCCTCATGTCTTTCGACTGTTTCATCATCTTCTACAAGCATATCATCATTATCATCCCCTGATA
TCTCTCCTTCTTCTACATCATCACCTCCAACTATCCGAGGCACAGAATCTACCAAAACCGGACTATTATCAACAGGTTTCTCTAATTCCATCTCTCTTTG
AACTGTTCCATTACAAGCTTCCAAAACTCCAGAACTTATAACCTCATTAGATTCAACAGATTTAGGAACCTCCTCTGCCTTTTTCTCACTTTCAACTGGA
TCTACTTGAACTTGAGTTGCAATATTAGGCTTCTCCAGGACATTTTGGACAATGTCATAGTCATTCACATCCAATGCCTCAAAGAGATTCACACAACTTT
CTGGAACAGAATCTTGAGTTTCATTAATCATAAGCTCAAAGCTATCGAAAAAATCTGTGTGTCT
| Start of BLAST Alignment: | NT 993 / Exon 2 of 7 |
| First 15 bp Perfect Match: | NT 940 / Exon 2 of 7 |
BLAST Details: Query Sequence: 36637_LBU Length: (564 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g56930 68418.t06596 zinc finger (CCCH-type) family pro... 2335 3.5e-101 1 At1g62760 68414.t06492 invertase/pectin methylesterase in... 261 0.00038 1 At2g27690 68415.t03123 cytochrome P450, putative similar ... 216 0.10 1 At5g37055 68418.t04125 zinc finger (HIT type) family prot... 204 0.27 1 >At5g56930 68418.t06596 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 2674 Minus Strand HSPs: Score = 2335 (356.4 bits), Expect = 3.5e-101, P = 3.5e-101 Identities = 493/518 (95%), Positives = 493/518 (95%), Strand = Minus / Plus Query: 564 AGACACACAGATTTTTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGATTCTGTT 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 AGACACACAGATTTTTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGATTCTGTT 537 Query: 504 CCAGAAAGTTGTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGACATTGTCCAA 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 CCAGAAAGTTGTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGACATTGTCCAA 597 Query: 444 AATGTCCTGGAGAAGCCTAATATTGCAACTCAAGTTCAAGTAGATCCAGTTGAAAGTGAG 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 AATGTCCTGGAGAAGCCTAATATTGCAACTCAAGTTCAAGTAGATCCAGTTGAAAGTGAG 657 Query: 384 AAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAATCTAATGAGGTTATAAGTTCTGGAGTT 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 658 AAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAATCTAATGAGGTTATAAGTTCTGGAGTT 717 Query: 324 TTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACCTGTTGATAAT 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 718 TTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACCTGTTGATAAT 777 Query: 264 AGTCCGGTTTTGGTAGATTCTGTGCCTCGGATAGTTGGAGGTGATGATGTAGAAGAAGGA 205 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 778 AGTCCGGTTTTGGTAGATTCTGTGTCTCGGATAGTTGGAGGTGATGATGTAGAAGAAGGA 837 Query: 204 GAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAACAGTCGAAAGA 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 838 GAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAACAGTCGAAAGA 897 Query: 144 CATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCCCACATACCAGG-ATAT- 87 ||||||||||||||||||||||||||||||||||||||||||| | || || ||| Sbjct: 898 CATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCCATCTCACTAGTCATAAG 957 Query: 86 A-TTGTGGTGTAAACAAATTGACGCTTAGACAACTTAA 50 | || |||||| | | ||| | ||| || | || Sbjct: 958 AGTTTTGGTGTTGAGGTAATGAATGT-AGATAA-TCAA 993 >At1g62760 68414.t06492 invertase/pectin methylesterase inhibitor family protein low similarity to extensin [Volvox carteri] GI:21992 Length = 939 Plus Strand HSPs: Score = 261 (45.2 bits), Expect = 0.00038, P = 0.00038 Identities = 265/453 (58%), Positives = 265/453 (58%), Strand = Plus / Plus
Border_2 (36637_RBD)
TGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCACCCTAATC
AATTTGTTTATTAAGAGTTTTGGTGTTGAGGTAATGAATGTAGATAATCAAGCCAAGAAGATTGATCAAACTTTCAGTAACGAAGCAAAGGTATCCAATA
TTAAAGAATCTTGTTATGTTATGTTGCTTAGGTGTTAATAAAATCTGACTTGTATTTTAACTTGCAGATGGATCCTGGAACCTCCATCAAAAAAAGGTCT
GCGCCTTCTAAGGATGCAAAAGCCAGAAAGAGGGTAATGTAGTGTATGCATTTCTTTGACATATTACGGGGATATCTTACAATCATTTTGTGTGTGGAGT
AAGATGTTTACTTACTGATAAGCTATTTCATGCAGGCAAAAGCTAGGATAAAAAGAGCTCAAGAGCGTATAGCCCTTGGCGTGAAAAAGCTGAAACTGAA
ACCAGTAGCTCCAAAACCAAAGCCTATCAAGTATTGTCGACACTATCTCAAGGGGCGGTGCCATGAGGTCTACACAACGGCTTTGGATTATAAATATTTC
TTTGGATTTAAAAGTTTTGTTTGCTGATGCACTTGTTTTTCTTCTTTTGTAGGGAGATAAATGCAAATTTTCACATGATACAATACCGGAACCAAATGTT
CGGTAAGATTACTGGTTCAAGAGATAACTTATTTTCTCAAGTTAAATAG
| Start of BLAST Alignment: | NT 953 / Exon 2 of 7 |
| First 15 bp Perfect Match: | NT 953 / Exon 2 of 7 |
BLAST Details: Query Sequence: 36637_RBD Length: (749 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g56930 68418.t06596 zinc finger (CCCH-type) family pro... 3161 1.7e-138 1 At4g03740 68417.t00470 hypothetical protein 193 0.92 1 At2g42200 68415.t04789 squamosa promoter-binding protein-... 192 0.95 1 At2g16980 68415.t01856 expressed protein 192 0.97 1 >At5g56930 68418.t06596 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 2674 Plus Strand HSPs: Score = 3161 (480.3 bits), Expect = 1.7e-138, P = 1.7e-138 Identities = 637/640 (99%), Positives = 637/640 (99%), Strand = Plus / Plus Query: 112 TAAGAGTTTTGGTGTTGAGGTAATGAATGTAGATAATCAAGCCAAGAAGATTGATCAAAC 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 954 TAAGAGTTTTGGTGTTGAGGTAATGAATGTAGATAATCAAGCCAAGAAGATTGATCAAAC 1013 Query: 172 TTTCAGTAACGAAGCAAAGGTATCCAATATTAAAGAATCTTGTTATGTTATGTTGCTTAG 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1014 TTTCAGTAACGAAGCAAAGGTATCCAATATTAAAGAATCTTGTTATGTTATGTTGCTTAG 1073 Query: 232 GTGTTAATAAAATCTGACTTGTATTTTAACTTGCAGATGGATCCTGGAACCTCCATCAAA 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1074 GTGTTAATAAAATCTGACTTGTATTTTAACTTGCAGATGGATCCTGGAACCTCCATCAAA 1133 Query: 292 AAAAGGTCTGCGCCTTCTAAGGATGCAAAAGCCAGAAAGAGGGTAATGTAGTGTATGCAT 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1134 AAAAGGTCTGCGCCTTCTAAGGATGCAAAAGCCAGAAAGAGGGTAATGTAGTGTATGCAT 1193 Query: 352 TTCTTTGACATATTACGGGGATATCTTACAATCATTTTGTGTGTGGAGTAAGATGTTTAC 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1194 TTCTTTGACATATTACGGGGATATCTTACAATCATTTTGTGTGTGGAGTAAGATGTTTAC 1253 Query: 412 TTACTGATAAGCTATTTCATGCAGGCAAAAGCTAGGATAAAAAGAGCTCAAGAGCGTATA 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1254 TTACTGATAAGCTATTTCATGCAGGCAAAAGCTAGGATAAAAAGAGCTCAAGAGCGTATA 1313 Query: 472 GCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATCAAG 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1314 GCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATCAAG 1373 Query: 532 TATTGTCGACACTATCTCAAGGGGCGGTGCCATGAGGTCTACACAACGGCTTTGGATTAT 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1374 TATTGTCGACACTATCTCAAGGGGCGGTGCCATGAGGTCTACACAACGGCTTTGGATTAT 1433 Query: 592 AAATATTTCTTTGGATTTAAAAGTTTTGTTTGCTGATGCACTTGTTTTTCTTCTTTTGTA 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1434 AAATATTTCTTTGGATTTAAAAGTTTTGTTTGCTGATGCACTTGTTTTTCTTCTTTTGTA 1493 Query: 652 GGGAGATAAATGCAAATTTTCACATGATACAATACCGGAA-CCAAATGTTCGGTAAGATT 710 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1494 GGGAGATAAATGCAAATTTTCACATGATACAATACCGGAAACCAAATGTTCGGTAAGATT 1553 Query: 711 ACTGGTTCAAGAGATAACTTATTTTCTCAAGTT-AAATAG 749 |||| |||||||||||||||||||||||||||| |||||| Sbjct: 1554 ACTGTTTCAAGAGATAACTTATTTTCTCAAGTTTAAATAG 1593 >At4g03740 68417.t00470 hypothetical protein Length = 1524 Plus Strand HSPs: Score = 193 (35.0 bits), Expect = 2.5, P = 0.92 Identities = 107/173 (61%), Positives = 107/173 (61%), Strand = Plus / Plus