At1g11680 SYNGENTA 37351
Genomic Sequence (from TAIR)
gttaaaagagtaaattcaggtgagagaaatcagcttcaagcttaaga◄gagcttcgaaagcgaaagcgacgattt◄cttctccatcgtgagagcaaatct ccagagccgttttctcttcttcttcttcctcctcgcgccgtctctgaaactccatcatcgtatcaatcaaattgcttcctcctccaaagtaagcttcttt tcgattctcaaccaatcatagtagtagtgtgcttctctcttatcctctgttttctaagttttgtatcaatctccacatagcttttctcgttctattatcg tagaaactcttaaactatagattagatcactcacgattcaatcataatcaatctggatctgaatctaattacgcatcgtgattcaaaatttgtgtttttt tgtgtgtgtgtgacagttgaaaaacaATGGAATTGGATTCGGAGAACAAATTGTTGAAGACGGGTTTGGTTATAGTGGCGACACTTGTTATAGCCAAACT CATCTTCTCTTTCTTCACTTCTGATTCTAAGAAGAAGCGTCTTCCTCCTACTCTTAAAGCTTGGCCTCCATTGGTTGGAAGTCTTATCAAATTCTTGAAA GGACCTATTATTATGCTTAGAGAGGAATACCCTAAGCTTGGAAGTGTGTTTACTGTTAATCTTGTTCACAAAAAGATTACTTTTCTTATTGGTCCTGAAG TCTCTGCTCATTTTTTCAAAGCTTCTGAATCTGATCTTAG►TC►AGCAGGAAGTGTATCAGTTCAATGTCCCTACTTTTGGTCCTGGAGTTGTTTTCGAT GTTGATTATTCTGTTCGTCAGGAGCAGTTTCGGTTCTTCACTGAGGCACTTAGAGTTAACAAGTTGAAGGGTTATGTGGATATGATGGTTACTGAAGCTG AGgtaaagaaatttggactttttagcttgtacttgtgatgtatgagtttaggttcacttttcatgcttctgcttcgttatactcacatacaacatatact ctgattgatctttaacggtataatcttccagtgagtaggtgttgtgtgcatttattggtagtttcatttataaatacttgtccttgttcttggcagGATT ACTTCTCTAAATGGGGAGAGAGTGGTGAAGTTGATATTAAGGTTGAGCTAGAGAGGCTCATCATCTTGACTGCAAGTAGATGTTTACTGGGTCGAGAAGT TCGTGATCAGCTTTTTGATGATGTCTCTGCTTTGTTCCATGACCTTGACAATGGAATGCTTCCCATCAGTGTTCTCTTCCCATATCTCCCAATTCCAGCT CACCGCCGTCGTGACCGTGCCCGAGAAAAGCTTTCGGAGATTTTCGCAAAAATCATTGGGTCGAGAAAACGCTCTGGAAAAACAGAGAACGACATGCTGC AGTGTTTCATCGAATCAAAGTACAAAGATGGTAGACAGACAACCGAATCTGAAGTCACTGGTTTGCTCATTGCTGCTCTGTTTGCAGGACAACACACGAG CTCTATCACTTCCACCTGGACCGGTGCTTATCTGATGCGATACAAAGAGTACTTCTCAGCTGCTCTTGATGAGCAGAAGAACCTGATTGCGAAACATGGA GACAAGATCGATCATGATATCTTATCCGAGATGGATGTTCTCTACCGCTGCATTAAGGAAGCGTTGAGGCTTCACCCTCCACTCATCATGTTAATGAGAG CCTCGCACAGTGATTTCAGCGTGACAGCTCGGGATGGAAAAACTTACGATATCCCAAAGGGTCACATCGTTGCAACCTCCCCTGCATTTGCCAACCGCTT ACCGCACATCTTCAAAGACCCCGACACCTACGACCCAGAAAGATTCTCCCCTGGAAGAGAAGAGGACAAAGCCGCAGGGGCATTCTCGTACATTGCATTC GGAGGGGGAAGGCACGGGTGCCTTGGAGAGCCGTTTGCTTACCTGCAGATCAAAGCCATATGGAGTCATTTGTTGAGGAACTTCGAGCTTGAGCTAGTTT CACCGTTCCCTGAGATTGACTGGAACGCTATGGTGGTTGGAGTTAAAGGCAATGTGATGGTGCGTTACAAGAGGCGCCAGCTTTCTTAAagacaagttta aggttattgcagctttggatttttctctctggtttctgctttgcttttgtccctctctggttttagttttgttgttgaataattcttctgtttttataaa ctgttgttactctttaattgacatttatttttaagcttcctaagtttgttggttctgcaaatgtgctcatttatacggaacttctttggtttaggctcaa acttctagtaggcaatatgttaaattggtaaaattctattttaggaagaaaatatttgattgtgccctatattttggacaacaaccggtgcaaaacagtt actaaaattacatataattatataggaagatatctatcaaatacttttatttttgttcagtatacccaaaattatctgattattacaagagaaaaggttc ataa
Border_1 (37351_LBU)
AATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCG
CAATGTGTTATTAAGTTGTCTTAAGCTTGAAGCTGATTTCTCTCACCTGAATTTACTCTTTTAACTCTGATTTTGTTTTCGATTTACTATTTCATTTCGA
CTTTTTCCTTAATATAAAATTCAACTGTAAAAAGTAAAAAGTAAAAAGTGAAAACACACCCATGTGGCAATTTTGTTTTTTTCTAGTAATATGATTGGAT
TATTTCAACAAAAGTAAAACCAACGGCGTTGATGGTATAATTACGGAAAAGCTTCATATTCATTAACCAGCCAACGACGTCGTTACAACAAAAGTAAAAC
CAACGGCGTTGATGGTATATGCTTTGACACAAAAATTAAAATTTATGTTCAGTTGTAGTATATGTTATTGCACAATAGTATTATTCATGTAAAAATCCAA
CATAACTCAAATTTTGACGAATGTAAATTCCCATTTTCTGCGTAAAATCACAACATATATTCGGATTGATTCCACTACGAACCAAATTTATGTCTATGTG
GGTTTTTAAACTCAAGAGTTGATCCGGACAATGATGCGATTTATATGGCTAATGCCTTAAGACGGAGAAAACAAAGTAACTCGACTTTTTTACTAAA
| Start of BLAST Alignment: | < 350 / Exon 1 of 3 (Intron 1 in 5` UTR) |
| First 15 bp Perfect Match: | < 377 / Exon 1 of 3 (Intron 1 in 5` UTR) |
BLAST Details: Query Sequence: 37351_LBU Length: (697 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F25C20 51344 2732 3.1e-117 1 F9D12 67953 269 0.0012 1 F23J3 67091 235 0.051 1 T3H13 67090 235 0.051 1 F25C20 51344 Length = 91,566 Plus Strand HSPs: Score = 2732 (416.0 bits), Expect = 3.1e-117, P = 3.1e-117 Identities = 568/607 (93%), Positives = 568/607 (93%), Strand = Plus / Plus Query: 91 AAAACGTCCGCAATGTGTTATTAAGTTGTCTTAAGCTTGAAGCTGATTTCTCTCACCTGA 150 ||| |||| || | || ||| | |||||||||||||||||||||||||||||||| Sbjct: 52863 AAATCGTC-GCTTTCGCTTTCGAAGCTCTCTTAAGCTTGAAGCTGATTTCTCTCACCTGA 52921 Query: 151 ATTTACTCTTTTAACTCTGATTTTGTTTTCGATTTACTATTTCATTTCGACTTTTTCCTT 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52922 ATTTACTCTTTTAACTCTGATTTTGTTTTCGATTTACTATTTCATTTCGACTTTTTCCTT 52981 Query: 211 AATATAAAATTCAACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACCCATGTGGCAA 270 ||||||||||||||||| |||||||||||||||| Sbjct: 52982 AATATAAAATTCAACTGTAAAAAGTAAAAAGTAAAAAGTGAAAACACACCCATGTGGCAA 53041 Query: 271 TTTTGTTTTTTTCTAGTAATATGATTGGATTATTTCAACAAAAGTAAAACCAACGGCGTT 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53042 TTTTGTTTTTTTCTAGTAATATGATTGGATTATTTCAACAAAAGTAAAACCAACGGCGTT 53101 Query: 331 GATGGTATAATTACGGAAAAGCTTCATATTCATTAACCAGCCAACGACGTCGTTACAACA 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53102 GATGGTATAATTACGGAAAAGCTTCATATTCATTAACCAGCCAACGACGTCGTTACAACA 53161 Query: 391 AAAGTAAAACCAACGGCGTTGATGGTATATGCTTTGACACAAAAATTAAAATTTATGTTC 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53162 AAAGTAAAACCAACGGCGTTGATGGTATATGCTTTGACACAAAAATTAAAATTTATGTTC 53221 Query: 451 AGTTGTAGTATATGTTATTGCACAATAGTATTATTCATGTAAAAATCCAACATAACTCAA 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53222 AGTTGTAGTATATGTTATTGCACAATAGTATTATTCATGTAAAAATCCAACATAACTCAA 53281 Query: 511 ATTTTGACGAATGTAAATTCCCATTTTCTGCGTAAAATCACAACATATATTCGGATTGAT 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53282 ATTTTGACGAATGTAAATTCCCATTTTCTGCGTAAAATCACAACATATATTCGGATTGAT 53341 Query: 571 TCCACTACGAACCAAATTTATGTCTATGTGGGTTTTTAAACTCAAGAGTTGATCCGGACA 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53342 TCCACTACGAACCAAATTTATGTCTATGTGGGTTTTTAAACTCAAGAGTTGATCCGGACA 53401 Query: 631 ATGATGCGATTTATATGGCTAATGCCTTAAGACGGAGAAAACAAAGTAACTCGACTTTTT 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 53402 ATGATGCGATTTATATGGCTAATGCCTTAAGACGGAGAAAACAAAGTAACTCGACTTTTT 53461 Query: 691 TACTAAA 697 ||||||| Sbjct: 53462 TACTAAA 53468 F9D12 67953 Length = 112,253 Plus Strand HSPs: Score = 269 (46.4 bits), Expect = 0.0012, P = 0.0012 Identities = 253/460 (55%), Positives = 253/460 (55%), Strand = Plus / Plus
Border_2 (37351_RBD)
ATAACAATTTCACACAGGAAACAGCTATGACCATKGWTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGG
ATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTGAGCAGGAAGTGTATCAGTTCAATGTCCCTACTTTTGGTCCTGGAGTTGTTTTCGA
TGTTGATTATTCTGTTCGTCAGGAGCAGTTTCGGTTCTTCACTGAGGCACTTAGAGTTAACAAGTTGAAGGGTTATGTGGATATGATGGTTACTGAAGCT
GAGGTAAAGAAATTTGGACTTTTTAGCTTGTACTTGTGATGTATGAGTTTAGGTTCACTTTTCATGCTTCTGCTTCGTTATACTCACATACAACATATAC
TCTGATTGATCTTTAACGGTATAATCTTCCAGTGAGTAGGTGTTGTGTGCATTTATTGGTAGTTTCATTTATAAATACTTGTCCTTGTTCTTGGCAGGAT
TACTTCTCTAAATGGGGAGAGAGTGGTGAAGTTGATATTAAGGTTGAGCTAGAGAGGCTCATCATCTTGACTGCAAGTAGATGTTTACTGGGTCGAGAAG
TTCGTGATCAGCTTTTTGATGATGTCTCTGCTTTGTTCCATGACCTTGACAATGGAATGCTTCCCATCAGT
| Start of BLAST Alignment: | NT 314 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 316 / Exon 1 of 2 |
BLAST Details: Query Sequence: 37351_RBD Length: (671 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g11680 68414.t01193 obtusifoliol 14-demethylase (CYP51... 2631 1.8e-114 1 At2g17330 68415.t01898 pseudogene, obtusifoliol 14-alpha ... 675 5.9e-25 1 At3g18860 68416.t02135 transducin family protein / WD-40 ... 190 0.97 1 At4g17990 68417.t02523 hypothetical protein contains Pfam... 188 0.98 1 Length = 2233 Plus Strand HSPs: Score = 2631 (400.8 bits), Expect = 1.8e-114, P = 1.8e-114 Identities = 527/528 (99%), Positives = 527/528 (99%), Strand = Plus / Plus Query: 144 TGAGCAGGAAGTGTATCAGTTCAATGTCCCTACTTTTGGTCCTGGAGTTGTTTTCGATGT 203 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 718 TCAGCAGGAAGTGTATCAGTTCAATGTCCCTACTTTTGGTCCTGGAGTTGTTTTCGATGT 777 Query: 204 TGATTATTCTGTTCGTCAGGAGCAGTTTCGGTTCTTCACTGAGGCACTTAGAGTTAACAA 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 778 TGATTATTCTGTTCGTCAGGAGCAGTTTCGGTTCTTCACTGAGGCACTTAGAGTTAACAA 837 Query: 264 GTTGAAGGGTTATGTGGATATGATGGTTACTGAAGCTGAGGTAAAGAAATTTGGACTTTT 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 838 GTTGAAGGGTTATGTGGATATGATGGTTACTGAAGCTGAGGTAAAGAAATTTGGACTTTT 897 Query: 324 TAGCTTGTACTTGTGATGTATGAGTTTAGGTTCACTTTTCATGCTTCTGCTTCGTTATAC 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 898 TAGCTTGTACTTGTGATGTATGAGTTTAGGTTCACTTTTCATGCTTCTGCTTCGTTATAC 957 Query: 384 TCACATACAACATATACTCTGATTGATCTTTAACGGTATAATCTTCCAGTGAGTAGGTGT 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 958 TCACATACAACATATACTCTGATTGATCTTTAACGGTATAATCTTCCAGTGAGTAGGTGT 1017 Query: 444 TGTGTGCATTTATTGGTAGTTTCATTTATAAATACTTGTCCTTGTTCTTGGCAGGATTAC 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1018 TGTGTGCATTTATTGGTAGTTTCATTTATAAATACTTGTCCTTGTTCTTGGCAGGATTAC 1077 Query: 504 TTCTCTAAATGGGGAGAGAGTGGTGAAGTTGATATTAAGGTTGAGCTAGAGAGGCTCATC 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1078 TTCTCTAAATGGGGAGAGAGTGGTGAAGTTGATATTAAGGTTGAGCTAGAGAGGCTCATC 1137 Query: 564 ATCTTGACTGCAAGTAGATGTTTACTGGGTCGAGAAGTTCGTGATCAGCTTTTTGATGAT 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1138 ATCTTGACTGCAAGTAGATGTTTACTGGGTCGAGAAGTTCGTGATCAGCTTTTTGATGAT 1197 Query: 624 GTCTCTGCTTTGTTCCATGACCTTGACAATGGAATGCTTCCCATCAGT 671 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1198 GTCTCTGCTTTGTTCCATGACCTTGACAATGGAATGCTTCCCATCAGT 1245 >At2g17330 68415.t01898 pseudogene, obtusifoliol 14-alpha demethylase, putative similar to obtusifoliol 14-alpha demethylase GI:14624983 from [Arabidopsis thaliana]; blastp match of 72% identity and 1.9e-177 P-value to GP|27461067|gb|AAL40888.1||AY065641 obtusifoliol-14-demethylase {Nicotiana tabacum} Length = 2086 Plus Strand HSPs: Score = 675 (107.3 bits), Expect = 5.9e-25, P = 5.9e-25 Identities = 191/255 (74%), Positives = 191/255 (74%), Strand = Plus / Plus