At2g26930 SYNGENTA 38108
Genomic Sequence (from TAIR)
tcaacatactattagtaatcaatctacaaaaatagaaacagactgaagtttatgaaattatacaaatgagcttagaaataagcttatacgcagcgttgca taagcttatcatcctataatctataaccccaattgaagcatcagtttggagattaataagagaaagagattaggccaaattggtaaaggatagttattgt agttgactaattgaattgtctacctaaagtgcccaaatgtcatagagatgaaaaaatgtgctattgggccaatttctctatacaaaaacattttgatttt ttgttagaattgggctgattcttataaaaaaaaaaaaaataggtgacatatcagatcaaagagaaaaaaataaggtaggaagaaacaacaacaATGGCAA CGGCTTCTCCTCCATTTATCTCAACTCTCAGCTTCACTCACTCTTCTTTCAAAACTTCTTCTTCTTCTTCATTTTCTCCGAAGCTTCTTCGACCCCTCTT AAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGgtaatcaatctcctccccaaattcccagaaaggattgatttttattgtacaactgttagattg tgatgggttctcgatctaattgaataactcggaatcaataatggccacaaaaaaggactcctttttgttccttcaactttcgtttttagctcttcgtttt ttctggatttgaattcacaatttgagcttgatgcttgtggatgtgtcgttgttattgttagATAGTGTTTGATCCTGATGAGAGGCTTAATAAGATAGGT GATGATGTTGACAAAGAAGCTCCTTTGTCCAGGCTTAAGCTCTTCTCACCTTGCAAGgttcttaaagacacttccttttatctatactttcttgtttttt tactctaagaatcattggcatgtcttttactgtgtagATCAATGTTTTCTTGAGGATCACCGGAAAGCGAGAAGATGGGTTTCATGATTTAGCCTCTTTG TTTCATgtaagttttcttcctcacaagtttaaagcttttgcgatatttctcattgtctcttgatgcctttagtatttgctatttgtatttgatatagGTG ATTAGCTTAGGAGACACTATTAAATTCTCATTGTCACCATCAAAGTCTAAAGATCGTTTGTCTACTAACGTTCAAGGAGTCCCTGTTGATGGGAGAAATC TGgtgagacgactttcgttattctgtggcctgtggatgaagcattattctaatcctctggcctgtgtcctattatgcagATTATAAAAGCACTTAACCTT TACAGGAAGAAAACTGGTAGTAACAGATTCTTCTGGgtgagaacactatacatcaatgatttcttttactacatttcactgtgatgatttgaacttatat tctttctttatatgtaaagATTCATTTAGATAAGAAGGTGCCTACCGGGGCTGGACTCGGTGGTGGAAGTAGTAATGCTGCAACTGCACTCTGGGCGGCA AATGAGCTCAATGGAGGTCTTGTCACTGAGAACGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCTTCTTCTCGCATGGAGCTGCCT ATTGTACCGGGAGAGGTGAGgtatgttttgcttagagtttacggtctattttgcggcattctactagttagcaaatccttgttctgattcagttctttta cacccatattaattgggctttgtgggttgtaaacatgctccagtttattttgctgaattctaatctaaaggctaatgcagATTGTCCAAGACCTTCCTCC ACCTTTTCCTCTTGATCTTCCGATGGTGCTCATAAAGCCCCGAGAAGCATGTTCCACTGCTGAAGTTTACAAAgtaatcaactgaaactgattgatggat attttgattcaagaagcttttcaggattttgtgacttacgcttttattttttagCGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTAC TAGAGAATGTGACCAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGgtacgatctatatgcatatgtcgcatctcccttcctttgccaagaa gatagccacatctttaaaattcaagattcagtctgatacatggaccatgaattacatttacgcttttgacttttccagAACCGCCAGCGTTTTCAGTTCT TCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGACGTGGGGAATACGATGCTGTGTTTATGTCTGGGAGgtataccttttctacagttttt tttgttatttccacttcattgagaaatttcacaaaatactgtgc◄atcacataggagc►tc►atctaatggaaacagtgtgctactactgtagttgtctt cccaaattcatcttaacaagctagtataagatcatatataatgagctgagtactgtttactagaataaga◄gattataaatgagttgagtaattgtgcta attttggtgggatgaatgcataacagTGGAAGCACTATTATCGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACG TGTTCTTGTCTGgtatgctcttcgtacaagtagtgtggtttctactcttctgaatcttgtacatgtaaggaactaattccaagtaaaattgttgcagAAG CAAACTTTATGACGCGTGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGAga tgttacaaacatgtaattttttgaaaggattgatttgagattcctacttgtgtttcgaatagtgagtggttaactaaaggagaagatgctttaaatataa attaaaagttttttaaaaagacatattcacgaatgataatcaaagagagaagcaaccacacatcagtcatgaaaccattttctgtcttctttttttcttg ttttattactttcatttccatatgaaactcctatgctcttacagagaaggagacacatattgtctagacaagctaaagatatcttttccttcaaatggtg aagtccaatctggagaggtagctgcttgttgtgtttccacgataacaccagcacctgaattctccatagatacaccgttgctgttgttgagtctacctcc catggaaccatttagactgtaccggttcatgttctcatcatatatttggctgctgctctttaacccggaccagtttccattgactctactattttgtgat aaactttgatctagactccagtctatgtttgtgtagtccactgaaccgccagagatccaatctataggtgaagatgcacccgatgttccagctgaaccaa ccgcagagaataatcccagcgaagacgcagcagatatgggtggagatgatgctgtatttctagtccattgcccgccattccctctggccatactaccatg tgga
Border_1 (38108_RBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCGCGCAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACGGA
ATGAGCTTTGGATCAGATTGTATGTTATTAAGGCACCACAATATGTAGTTGTCCGCAATGTGTTATTCAATGTGTTATGTGCATCACATAGGAGCACAGT
ATTTTGTGAAATTTCTCAATGAAGTGGAAATAACAAAAAAAACTGTAGAAAAGGTATACCTCCCAGACATAAACACAGCATCGTATTCCCCACGTCCAGA
TGCTATTATCCGTTGCTTCAAGCGTTTTAGAGATGGAAGAACTGAAAACGCTGGCGGTTCTGGAAAAGTCAAAAGCGTAAATGTAATTCATGGTCCATGT
ATCAGACTGAATCTTGAATTTTAAAGATGTGGCTATCTTCTTGGCAAAGGAAGGGAGATGCGACATATGCATATAGATCGTACCCAAATCGTTTACGCAT
ATGCTTTGAGACACACCATTGCTGGTCACATTCTCTAGTAATGTCAAGGGATTAATATTGCTCGTCTGATCTAAACGAAGACGCTAAAAAATAAAAGCGT
AAGTCACAAAATCCTGAAAAGCTTCTTGAATCAAAATATCCATCAATCAGTTTCAGTTGATTACTTTGTAAACTTCAGCAGTGGAACATGCTTCTCGGGG
CTTTATGAGCACCATCGGAAGATCAAGAGGAAAAGGTGGAGGAAGGTCTTGGACAATCTGCATT
| Start of BLAST Alignment: | NT 2074 / Intron 9 of 10 |
| First 15 bp Perfect Match: | NT 1951 / Intron 9 of 10 |
BLAST Details: Query Sequence: 38108_RBU Length: (864 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g26930 68415.t03017 4-diphosphocytidyl-2-C-methyl-D-er... 2848 2.1e-124 1 >At2g26930 68415.t03017 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (CDPMEK) identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase)(CDPMEK) [Arabidopsis thaliana] SWISS-PROT:O81014 Length = 3026 Minus Strand HSPs: Score = 2848 (433.4 bits), Expect = 2.1e-124, P = 2.1e-124 Identities = 634/702 (90%), Positives = 634/702 (90%), Strand = Minus / Plus Query: 864 AATGCAGATTGTCCAAGACCTTCCTCCACCTTTTCCTCTTGATCTTCCGATGGTGCTCAT 805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1398 AATGCAGATTGTCCAAGACCTTCCTCCACCTTTTCCTCTTGATCTTCCGATGGTGCTCAT 1457 Query: 804 AAAGCCCCGAGAAGCATGTTCCACTGCTGAAGTTTACAAAGTAATCAACTGAAACTGATT 745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 AAAGCCCCGAGAAGCATGTTCCACTGCTGAAGTTTACAAAGTAATCAACTGAAACTGATT 1517 Query: 744 GATGGATATTTTGATTCAAGAAGCTTTTCAGGATTTTGTGACTTACGCTTTTATTTTTTA 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1518 GATGGATATTTTGATTCAAGAAGCTTTTCAGGATTTTGTGACTTACGCTTTTATTTTTTA 1577 Query: 684 GCGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTACTAGAGAATGTGAC 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1578 GCGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTACTAGAGAATGTGAC 1637 Query: 624 CAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGGTACGATCTATATGCATAT 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1638 CAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGGTACGATCTATATGCATAT 1697 Query: 564 GTCGCATCTCCCTTCCTTTGCCAAGAAGATAGCCACATCTTTAAAATTCAAGATTCAGTC 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1698 GTCGCATCTCCCTTCCTTTGCCAAGAAGATAGCCACATCTTTAAAATTCAAGATTCAGTC 1757 Query: 504 TGATACATGGACCATGAATTACATTTACGCTTTTGACTTTTCCAGAACCGCCAGCGTTTT 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1758 TGATACATGGACCATGAATTACATTTACGCTTTTGACTTTTCCAGAACCGCCAGCGTTTT 1817 Query: 444 CAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGACGTGGGGAAT 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1818 CAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGACGTGGGGAAT 1877 Query: 384 ACGATGCTGTGTTTATGTCTGGGAGGTATACCTTTTCTACAGNNNNNNNNGTTATTTCCA 325 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1878 ACGATGCTGTGTTTATGTCTGGGAGGTATACCTTTTCTACAGTTTTTTTTGTTATTTCCA 1937 Query: 324 CTTCATTGAGAAATTTCACAAAATACTGTGC-TCCTATGTGATGCACATAACACATTGAA 266 ||||||||||||||||||||||||||||||| || || || || ||| | || ||| Sbjct: 1938 CTTCATTGAGAAATTTCACAAAATACTGTGCATCACATAGGA-GCTCATCT-A-ATGGAA 1994 Query: 265 TAACACATTGCGGACAACTACATATTGTGGTGCCTTAATAA-CATA-CAATCTGATCCAA 208 ||| ||| || ||| | |||| | || | | | | || ||| || | || Sbjct: 1995 --ACAGTGTGCT-ACTACTGTAG-TTGTCTTCCCAAATTCATCTTAACAAGCTAGTATAA 2050 Query: 207 AGCTCATTCCGTTTAAACTGAAGGCGGGAAACGACAATCTGA 166 | |||| | | |||| | | || | ||| || Sbjct: 2051 -GATCATATATAATGAGCTGAGTACTGTTTACTAGAATAAGA 2091
Border_2 (38108_LBD)
AATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCG
CAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTATCTAATGGAAACAGTGTGCTACTACTGTAGTTGTCTTCCCAAATTCATCTTAACAAGCTAGTA
TAAGATCATATATAATGAGCTGAGTACTGTTTACTAGAATAAGAGATTATAAATGAGTTGAGTAATTGTGCTAATTTTGGTGGGATGAATGCATAACAGT
GGAAGCACTATTATCGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGTGTTCTTGTCTGGTATGCTCTTCGTAC
AAGTAGTGTGGTTTCTACTCTTCTGAATCTTGTACATGTAAGGAACTAATTCCAAGTAAAATTGTTGCAGAAGCAAACTTTATGACGCGTGAGGCTAATG
AATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGAGATGTTACAAACATGTAATTTTTTGAAAG
GATTGATTTGAGATTCCTACTTGTGTTTCGAATAGTGAGTGGTTAACTAAAGGAGAAGATGCTTTAAATATAAATTAAAAGTTTTTTAAAAAGACATATT
CACGAATGATAATCAAAGAGAGAAGCAACCACACATCAGTCATGAAACCATTTTCTGGCTTCTTTTTTTCTTGGTTTATTACTTTCATTTCCATATGAAA
CTCCTATGC
| Start of BLAST Alignment: | NT 1964 / Intron 9 of 10 |
| First 15 bp Perfect Match: | NT 1966 / Intron 9 of 10 |
BLAST Details: Query Sequence: 38108_LBD Length: (809 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g26930 68415.t03017 4-diphosphocytidyl-2-C-methyl-D-er... 3348 5.4e-147 1 At2g26920 68415.t03016 ubiquitin-associated (UBA)/TS-N do... 787 5.9e-30 1 At3g56920 68416.t05862 zinc finger (DHHC type) family pro... 257 0.0029 1 At5g49420 68418.t05680 MADS-box protein (AGL84) contains ... 212 0.30 1 >At2g26930 68415.t03017 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (CDPMEK) identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase)(CDPMEK) [Arabidopsis thaliana] SWISS-PROT:O81014 Length = 3026 Plus Strand HSPs: Score = 3348 (508.4 bits), Expect = 5.4e-147, P = 5.4e-147 Identities = 672/675 (99%), Positives = 672/675 (99%), Strand = Plus / Plus Query: 135 TTATCTAATGGAAACAGTGTGCTACTACTGTAGTTGTCTTCCCAAATTCATCTTAACAAG 194 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1982 TCATCTAATGGAAACAGTGTGCTACTACTGTAGTTGTCTTCCCAAATTCATCTTAACAAG 2041 Query: 195 CTAGTATAAGATCATATATAATGAGCTGAGTACTGTTTACTAGAATAAGAGATTATAAAT 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2042 CTAGTATAAGATCATATATAATGAGCTGAGTACTGTTTACTAGAATAAGAGATTATAAAT 2101 Query: 255 GAGTTGAGTAATTGTGCTAATTTTGGTGGGATGAATGCATAACAGTGGAAGCACTATTAT 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2102 GAGTTGAGTAATTGTGCTAATTTTGGTGGGATGAATGCATAACAGTGGAAGCACTATTAT 2161 Query: 315 CGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGT 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2162 CGGTATTGGTTCACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGT 2221 Query: 375 GTTCTTGTCTGGTATGCTCTTCGTACAAGTAGTGTGGTTTCTACTCTTCTGAATCTTGTA 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2222 GTTCTTGTCTGGTATGCTCTTCGTACAAGTAGTGTGGTTTCTACTCTTCTGAATCTTGTA 2281 Query: 435 CATGTAAGGAACTAATTCCAAGTAAAATTGTTGCAGAAGCAAACTTTATGACGCGTGAGG 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2282 CATGTAAGGAACTAATTCCAAGTAAAATTGTTGCAGAAGCAAACTTTATGACGCGTGAGG 2341 Query: 495 CTAATGAATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTC 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2342 CTAATGAATGGTACAAAGAACCTGCTTCTGCAAATGCTACTACCTCATCCGCCGAATCTC 2401 Query: 555 GCATGGATTTCCAATGAGATGTTACAAACATGTAATTTTTTGAAAGGATTGATTTGAGAT 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2402 GCATGGATTTCCAATGAGATGTTACAAACATGTAATTTTTTGAAAGGATTGATTTGAGAT 2461 Query: 615 TCCTACTTGTGTTTCGAATAGTGAGTGGTTAACTAAAGGAGAAGATGCTTTAAATATAAA 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2462 TCCTACTTGTGTTTCGAATAGTGAGTGGTTAACTAAAGGAGAAGATGCTTTAAATATAAA 2521 Query: 675 TTAAAAGTTTTTTAAAAAGACATATTCACGAATGATAATCAAAGAGAGAAGCAACCACAC 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2522 TTAAAAGTTTTTTAAAAAGACATATTCACGAATGATAATCAAAGAGAGAAGCAACCACAC 2581 Query: 735 ATCAGTCATGAAACCATTTTCTGGCTTCTTTTTTTCTTGGTTTATTACTTTCATTTCCAT 794 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct: 2582 ATCAGTCATGAAACCATTTTCTGTCTTCTTTTTTTCTTGTTTTATTACTTTCATTTCCAT 2641 Query: 795 ATGAAACTCCTATGC 809 ||||||||||||||| Sbjct: 2642 ATGAAACTCCTATGC 2656 >At3g56920 68416.t05862 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain Length = 2055 Minus Strand HSPs: Score = 257 (44.6 bits), Expect = 0.0029, P = 0.0029 Identities = 199/346 (57%), Positives = 199/346 (57%), Strand = Minus / Plus