At3g61780 SYNGENTA 38713
Genomic Sequence (from TAIR)
gccttgtctctgtaaccatggttatctgtaattagggttttctctgacgataaacttggggttgttcttatgtatctctctctgtctttctcatgtcatg gaggtttttttattataaaatatatagttcattacaattctgctatatctggaggaaaaacgtaaaatgttgaaccttttacttttatcaactgtagtgt tcataaatttatgtaatgcttgtgttgtgtccacgaaacgacgacgtttcatcattgttctgttaaacccagcttttggaacttggaagtgatgagcttt atatctggaaaatgtaaaatgttgaaccttttttcaactgtagtgttgttcaaaggcgttagctttgtttaagaaacgacgacgtttcatcattgttctg ttaaacccagcttttgggggttttctcactcggaagtgagctttatccctttggtttccatcaATGGAGGTTCTACTAAACTCCAATGATGGTTTCTTCA ATTTCTCGTCTTTCTCGTCCAATTCGAACAGGAGACTCGCTAACCAACGTCGATTCAACTTGCCCATCTCCAAATTCCACTACTATCGCGTTTCAATTCT CCGAGTCTCGGCTCGGTTCGGAGAGACCTCGAGGCGACGTAATTCGCTGAGGAAGAAGATCATCGGTGATGAGTATTGGCGTTCGACTCCGAAATCTTCT GAACCAGGTACGAAACCTCTAAACGAAAGCCATAAGTTTGGTCACTGTGATGATTTAAGTAGCACCGAGGGATTGAAAGATAGGGTTGCTCAAGATTCAA ATTTGCTGAATGAGCTTGAAGATTGGGTTGCTCGGTATAACAAGGAAGCAGAGTTTTGGGGTATTGGTTCGAATCCCATTTTCACTGTCTATCAGGATTC TGTTGGAAACGTAGAGAAAGTAGAGGTTGATGAAGACGAGGTCTTGAGTAGAAGAAGATCAGCTCTTGGGGATTTGGAATCAGTGAGTTCTAAGCTTGTA TATGCGAAGAAATTAGCTGAACAAATGGAGAATGGGGAACATGTGATCCATAAGGAGAGTTCTCTTGTCAAGTTCGTTTCTTCTTCTTCTTCTTCAGAGG AAGAGTTTCGTCTCGTTAGCTCAGTCCAAAACGCAATTCTTCGTCTTGACTTAATTCCAAAGTTGCCGGCGATTGGAAGAGCTGTTTTGTGTGGTTACAT TGGACTCTGGTTGCTGAAGACGGTGCTTGTGTATAGGAAGAGTAATGAGGTTGAGTGTACAGAGTTGGAGAAGGAGATGATGAGGAGAAAGATGAAAGCT TGGCAGGAAAGGGATATGTCGGAGAAAGGTACCGTGGAAGTTTTGCACAAGGAGGGTTTGGAAAAGCCATTGATGTCATTTGAGAAGCCTAAGTTTGATC GAAATGAACTTATGACTAGTATTTCTAAAGTTAAGGGTTCAGAGAAGAAACTGGAACTCGTGAATTCTCCTCATGTTGAGCTGGACTTTGTTGATAAGAT CCATGAAATCAAAGCAATGGCTAGACGAGCACGGGAGATAGAAGCTGGCATAGAACTTAATGAAAAGCAGAAGCTCGATGTGAACAAAGAAACAGGCGAC AATGAGGAAGATATAAGCATTCAGTCACAGAAGAGTCTTCCACATGAGGCTTTGACACACAGTGAAGGTGATGATGATAAAGATGAACGCTTGGGAACTT CGACTGACAGTGAGAACACTGAACTTTCTGGTTTTGCTGTTCCGATGTTGAATGGGGCTATGGTAGATTTTGGTTTTCTGAATCATGAAATGGCAGCATC TGACAAAGAAAAGGTGAGTAATGTGGTACCACCAGTTCCTACAGACGGAGTCATCCAATCTTCTGATGTCTCTAAGGATCAGTTAAGTATGATGAAGAAT AGCACTGGTCGTAAGTCACGGGTCATACGGTCTGTAAAAGAGGCTAAAGAGTTCCTTTCAAGAAGAAGTGGTGAGAAAGAGCTTACTCAGGAACCTTCTC AGATGATAGCCCAAGATAGTGTTGAAATCTTCTCAAAGCAGAGCGACGAAGAGCGTGGTGTAGCTAGAAAACACGAATTGGTTGACAAAAATAAAATCCT TGGTGCAGCTGTCAATGGAACCTTGAAATCTGCACTTGAGTCTACTTCTTCTGAACCGTTGGGGAAGGATGCTGATTGTCAACCCCAAAAGAATGATTAC CAAAAACTCTCAGAACCTGGGAATGCAGTTAAGGGATCGAGCAAGCAAATAAATTCTTCAAATAAAATCGAAGAGCACAATTTTAAATTTGCCAAAAGTT CTTCTGGTGGTACTGAACATATAGAGAAGGAAGAACCATCAGGGAAGGGGAATTGGATAGAGAATAACTACCATGAATTTGAGCCTGTTGTTGAAAAAAT GAGAGCAGGATTTAGGGATAATTATATGGCTGCTAGAGAGGGTGAAACTCGGGAGCCAGGTACAATTGCTGAAATTGCAGAACTTTACCGCAGTGAGTAT AATGATGAGCTTGAGTGGATGAAGGACGAGAAGCTAAGGGACATTGTCTTCCATGTTCGAGATAATGAGCTGGCTGGTAGGGATCCATTTCACCTGATTG ATGATGAAGATAAAGCTATGTTTTTGCAAGGCTTGGAGAAGAAAGTTGAGAAAGAAAATGAGAAACTGTCTCATCTGCATCAGTGGATTCATTCAAACAT TGAAAACCTTGACTACGGAGTAGgtaatcttctacaactttgattgagactcagtttgctcaatatcttacgtacacaaattatgcattaatcagcttgt caaaatatatctcaaccatctcccttcctcttattattcagATGGCGTCAGTGTGTATGATCCACTAGAAAAGATCATACCGAGATGGAAAGGGCCTTCA CTTGATAAGAACCCCGAGTTTCTCAATAACTATCATGAACAGCGTGAAGCACTGTTTTCTGAAAAAGCTGCATCTGTATCTCCTGTGAAATATGAAGAAC AGAGCTCTCATCAGGAATTATCAG►AGTCTGC►TTCCTCTGAGAACACTCTCACCCCTTCATCTGAAATTACCTCAAGCCAGCCAAAGATTGTTGTAGAA GGAAGTGATGGATCTGTTAGACCTGGTAAAAAATCAGGAAAGGAGTATTGGCAGCACACGAAGAAGTGGTCACGTGGGTTCCTTGAGTTGTACAATGCAG AGACTGATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGACTTAGACCGATGGATTACTGAAGACGAAATCAAAGACGCTGCTGATATAATGGA AAAGCTGCCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTCAACAAACTCAAGAGAGAGATGGAGTTGTTTGGTCCTCAAGCTGTTTTGAGCAAATAC CGCGAGTATGGAGAAGATAAGGAAGAAGATTATCTATGGTGGTTGGACCTTCCGCATGTACTGgtatgttttcctgctaaacagttgactgacattggag aaacacaaaagtccttgaaaatctgatatgtcttttcatgttttagTGCCTTGAGTTGTACACAGTTGATGAAAACGGAGAGCAGCAAGTAGGGTTCTAC ACATTGGAGATGGCAACAGATCTCGAGTTAGAACCCAAACCACATCATGTGATTGCTTTCGAGGACGCTGCAGACTGTCGAAACCTCTGTTACATTATTC AAGCTCATTTGGATATGCTACGAAGTGGAAACGTTTTCATTGTTCCGCGCCCGCCAAAGgtaatgaatttagccaatgaagaaactttaactagacgtgt ttctgttatcaattcaaagttgttctctttaacctacacagGATGCATATCGAGAAGCCAAGGCGAATGGATTTGGTGTAACGGTTATTAGGAAAGGAGA ACTGAAGTTGAATATTGACGAGCCATTAGAAGAAGTAGAGGAAGAGATCTGTGAGATAGGAAGCAAGATGTACCATGATAAGATCATGGGAGAACGATCT GTGGATATAAGCTCGTTGATGAAAGGTGTCTTTAACCTGAAGACCAAACCTACTGGCCGAAGAAGAAAACGATCAAAGCAGGCTCTTAAAGATTCTAACA AGAAAAGTAGCTGAggcaccaatccaaagggcctatagcaaacagagattggaggcaaacttagaaatgatagctgagggtactttcgtagttcgttatg ttgattcgtccagcgaatttgggctacttctttcttcgttacatatgttaattcgttcaacgaatttgggcccttttatgcacaagaaatccaaaggact gaaaaggctcaaatccatattttttgggcttacaaaatgcccattcccacaatctcccccaaataaatagcttctattttcgtgtatgatagacacatgt tgtgtgttttaaaccttgcctttttgattgatcataggttggttagagagagagtatgtgatcctactttagttcttggatcaccaaagcgtattagtca gttcttcttaaaccctctaagagacccacaaaaatttgttgttgtcgattatctgttctaagatagtctgtctctaacatgcttaatctgttgtgcagtt tg
Border_1 (38713_LB1D)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTCCTCTGAGAACACTCTCAC
CCCTTCATCTGAAATTACCTCAAGCCAGCCAAAGATTGTTGTAGAAGGAAGTGATGGATCTGTTAGACCTGGTAAAAAATCAGGAAAGGAGTATTGGCAG
CACACGAAGAAGTGGTCACGTGGGTTCCTTGAGTTGTACAATGCAGAGACTGATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGACTTAGACC
GATGGATTACTGAAGACGAAATCAAAGACGCTGCTGATATAATGGAAAAGCTGCCAGAGAGGAACAAGAAGTTCATGGAAAAGAAACTCAACAAACTCAA
GAGAGAGATGGAGTTGTTTGGTCCTCAAGCTGTTTTGAGCAAATACCGCGAGTATGGAGAAGATAAGGAAGAAGATTATCTATGGTGGTTGGACCTTCCG
CATGTACTGGTATGTTTTCCTGCTAAACAGTTGACTGACATTGGAGAAACACAAAAGTCCTTGAAAATCTGATATGTCTTTTCATGTTTTAGTGCCTTGA
GTTGTACACAGTTGATGAAAACGGAGAGCAGCAAGTAGGGTTCTACACATTGGAGATGGCAACAGATCTCGAGTTAGAACCCA
| Start of BLAST Alignment: | NT 2561 / Exon 2 of 4 |
| First 15 bp Perfect Match: | NT 2568 / Exon 2 of 4 |
BLAST Details: Query Sequence: 38713_LB1D Length: (683 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g61780 68416.t06402 expressed protein ; expression sup... 3022 2.4e-132 1 At5g28320 68418.t03132 expressed protein This is likely a... 2002 2.7e-85 1 At5g28400 68418.t03141 expressed protein 2002 2.7e-85 1 At2g06190 68415.t00619 gypsy-like retrotransposon family ... 198 0.63 1 >At3g61780 68416.t06402 expressed protein ; expression supported by MPSS Length = 3649 Plus Strand HSPs: Score = 3022 (459.5 bits), Expect = 2.4e-132, P = 2.4e-132 Identities = 608/611 (99%), Positives = 608/611 (99%), Strand = Plus / Plus Query: 74 AATTTG-TTCCTCTGAGAACACTCTCACCCCTTCATCTGAAATTACCTCAAGCCAGCCAA 132 | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2562 AGTCTGCTTCCTCTGAGAACACTCTCACCCCTTCATCTGAAATTACCTCAAGCCAGCCAA 2621 Query: 133 AGATTGTTGTAGAAGGAAGTGATGGATCTGTTAGACCTGGTAAAAAATCAGGAAAGGAGT 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2622 AGATTGTTGTAGAAGGAAGTGATGGATCTGTTAGACCTGGTAAAAAATCAGGAAAGGAGT 2681 Query: 193 ATTGGCAGCACACGAAGAAGTGGTCACGTGGGTTCCTTGAGTTGTACAATGCAGAGACTG 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2682 ATTGGCAGCACACGAAGAAGTGGTCACGTGGGTTCCTTGAGTTGTACAATGCAGAGACTG 2741 Query: 253 ATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGACTTAGACCGATGGATTACTG 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2742 ATCCAGAAGTGAAAGCTGTTATGAGAGACATGGGAAAAGACTTAGACCGATGGATTACTG 2801 Query: 313 AAGACGAAATCAAAGACGCTGCTGATATAATGGAAAAGCTGCCAGAGAGGAACAAGAAGT 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2802 AAGACGAAATCAAAGACGCTGCTGATATAATGGAAAAGCTGCCAGAGAGGAACAAGAAGT 2861 Query: 373 TCATGGAAAAGAAACTCAACAAACTCAAGAGAGAGATGGAGTTGTTTGGTCCTCAAGCTG 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2862 TCATGGAAAAGAAACTCAACAAACTCAAGAGAGAGATGGAGTTGTTTGGTCCTCAAGCTG 2921 Query: 433 TTTTGAGCAAATACCGCGAGTATGGAGAAGATAAGGAAGAAGATTATCTATGGTGGTTGG 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2922 TTTTGAGCAAATACCGCGAGTATGGAGAAGATAAGGAAGAAGATTATCTATGGTGGTTGG 2981 Query: 493 ACCTTCCGCATGTACTGGTATGTTTTCCTGCTAAACAGTTGACTGACATTGGAGAAACAC 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2982 ACCTTCCGCATGTACTGGTATGTTTTCCTGCTAAACAGTTGACTGACATTGGAGAAACAC 3041 Query: 553 AAAAGTCCTTGAAAATCTGATATGTCTTTTCATGTTTTAGTGCCTTGAGTTGTACACAGT 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3042 AAAAGTCCTTGAAAATCTGATATGTCTTTTCATGTTTTAGTGCCTTGAGTTGTACACAGT 3101 Query: 613 TGATGAAAACGGAGAGCAGCAAGTAGGGTTCTACACATTGGAGATGGCAACAGATCTCGA 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3102 TGATGAAAACGGAGAGCAGCAAGTAGGGTTCTACACATTGGAGATGGCAACAGATCTCGA 3161 Query: 673 GTTAGAACCCA 683 ||||||||||| Sbjct: 3162 GTTAGAACCCA 3172 >At5g28320 68418.t03132 expressed protein This is likely a pseudogene. Length = 4207 Plus Strand HSPs: Score = 2002 (306.4 bits), Expect = 2.7e-85, P = 2.7e-85 Identities = 412/425 (96%), Positives = 412/425 (96%), Strand = Plus / Plus