At4g28210 SYNGENTA 39002
Genomic Sequence (from TAIR)
CGCCACCGATTTCCTCCGTAGCTGACGGAGCTCATCGAGCTTAACCTCATAGTCAATATAGGCTATGAAATCTTCTTTGAGTGGGCTTGGACGCTTGAGC CGGTACTCAAACTTACGCCGCTGCTTCACGATCTCAGCTATCTCAGCACGAGTGAAGATTTCTCTTCGTTCTAGATCATCAAGCTCGTCAACCATCCGCT CGAGGCGGTATTGAACTACGTCGGCCATggctgctgcttctcgattctcggcggggactgataacggtagggcaaacgcttaatgcttcttcttctttct tcagttattatataatgggccgtaagagtaagaagctattgggcctacgtctaattttatcacggcccaatgttaaaactcttgctatgagctatttgtt gttgttctgggggaaaagctttagaagttgaagacg◄acgATGACGC◄TTTTAGCTCTCTCTTCTTCTCTGTCTTCTCCTTCCTTCTTCTGCCGCAATTC TCGTATTCGTTTCTCT►CCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTTACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCT CCGTCGTTTTGTGGCTCCGGGGAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCCAAAGGTGGGATTGAAGATGAC GCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTG gtacgtttctgcttacttttggcttcgttttagttaccgtgaatcataagtcttgtagcaaaatcaaatttttgttcttgttctcaatcgctgaagcatt tctgactcaagaccctgagattggaatttagggactatactctggtttagcatttgaatagtagtctagtgaattcgagttttgtataccttgttgcata gttcgaataagctttggataaatgaagtaacatcttgatcttctgttgtagCGCTGGGGTTTCTCGTTTATGCGTGGAGAGCTGTTTTGTTTGAGCTATC CAACTGGAGAAAAGCGGCTTTCGCTATCCTTGCGTTTGTGGGAGACCTTTCGAAGTTTGCATTGGCTCTTGTCTTCCACTTTATAGGCGATCCCATCACT TCTCTCATCAGCCTTGTAGAGACTGCAATGTACAGTGTTAGGGCGTTCTACTCCGGGATTGTGGCTTACACGCCTGTGAGAGAGTTAACCACGGTAATTC TTCTTGCATCCTCAGTGCTTGCTATAGGAGAAGCAGTTGCACCAGAGTCAATCAGCAAGCAGCCGTATGTGGTAACTATTGCGGGTCTGGTGGGGTATGC AGCGGTGCAGAGTTATATCTCAGAGCCGTTCTTCTGGACTGTCTTGTTAGGTTTGTATGGGTACTCGCGGTTGATAAAGAAGAGAGACGATGTGACCTCG GCTCTTCCTTCTGCAGCTGTTCTGGCAGGAGTAGGGGAGCCATGGGTGAGAGTGGTGGCTATCACAGGGTATCTGGCTCTAGCCATGTATCACAATTCAA CGAAGACCTCCTCAGAAGAAGAGAGTCAGATCTTAAGGAGGGCACCACCAATGCCGTTGTTGGCTGCAGCATTAGCCATTGGCGTCCGACTTGCTGCAAA ATGGGCTGGATACAGACACTTGACTTGGATGATTGTTTGAttctctgctgaaacaaagaactttagagacgaacaaaactagtttgtgttgtaacttgtt gtacctttccccaatgtttgaagagaaatttttgatgatacaagaaaaaggttttgtttctctgtttggataatgttagttaatacggcccatttcgaga actggtggtgggctatttcttagctagaagccatctaagtagatttcagctgtaattagggcttcacaatgaccctatataacggagcgtcaccaccttc ttcttcctcctcctaacatctcatttagtccgcattttctttgtattgttcgatttctatagttatttttcacctgtgtacatggttttactgttttggg ggagaaaggatttgtttttagattgcctcacatcacctttagcttgttttcgatataaaaccacggaaacaaagctagtcttcgaggcatatattgaact gcg
Border_1 (39002_AbBD)
TTGCGGACGTACTCAAGTTCTGCCGGCGAGCCGATGGCGGAAAGCAGAAAGACGACCTGGTAGAAACCTGCATTCGGTTAAACACCACGCACGTTGCCAT
GCAGCGTACGAAGAAGGCCAAGAACGGCCGCCTGGTGACGGTATCCGAGGGTGAAGCCTTGATTAGCCGCTACAAGATCGTAAAGAGCGAAACCGGGCGG
CCGGAGTACATCGAGATCGAGCTAGCTGATTGGATGTACCGCGAGATCACAGAAGGCAAGAACCCGGACGTGCTGACGGTTCACCCCGATTACTTTTTGA
TCGATCCCGGCATCGGCCGTTTTCTCTACCGCCTGGCACGCCGCGCCGCAGGCAAGGCAGAAGCCAGATGGTTGTTCAAGACGATCTACGAACGCAGTGG
CAGCGCCGGAGAGTTCAAGAAGTTCTGTTTCACCGTGCGCAAGCTGATCGGGTCAAATGACCTGCCGGAGTACGATTTGAAGGAGGAGGCGGGGCAGGCT
GGCCCGATCCTAGTCATGCGCTACCGCAACCTGATCGAGGGCGAAGCATCCGCCGGTTCCTAATGTACGGAGCAGATGCTAGGGCAAATTGCCCTAGCAG
GGGAAAAAGGTCGAAAAGGTCTCTTTCCTGTGGATAGCACGTACATTGGGAACCCAAAGCCGTACATTGGGAACCGGAACCCGTACATTGGGAACCCAAA
GCCGTACATTGGGAACCGGTCACACATGTAAGTGACTGATATAAAAGAGAAAAAAGGCGATTTTTCCGCCTAAAACTCTTTAAAACTTATTAAAACTCTT
AAAATCCGCCTGGCCTGTGCATAACTGTCTGGCCAGCGCACAGCCGAAGAGCTGCAAAAAGCGCCTACCCTTCGGTCGCTGCGCTCCCTACGCCCCGCCG
CTTCGCGTCTTCAACTTCTAAAGCTTTTCCCCCAGAACAACAACAAATAGCTCATAGCAAGAGTTTTAACATTGGGCCGTGATAAAATTAGACGTAGGCC
CAATAGCTTCTTACTCTTACGGCCCATTATATAATAACTGAAGAAAGAAGAAGAAGCATTAAGCGTTTGCCCTACCGTTATCAGTCCCCGCCGAGAATCG
AGAAGCAGCAGCCATGGCCGACGTAGTTCAATACCGCCTCGAGCGGATGGTTGACGAGCTTGATGATCTAGAACGAAGAGAAATCTTCACTCGTGCTGAG
ATAGCTGAGATCGTGAAGCAGCGGCGTAAGTTTGAGTACCGGATCAAGCGTCCAAGCCCACTCAAAGAAGATTTCATAGCCTATATTGACTATGAGGTTA
AGCTCGATGAGCTCCGTCAGCTACGGAGGAAATCGGTGGCGCGTGTGACTAAGAAGAGAAAGAAGAAATCAGTATCTGATTTCGCCGGTGTGGCTAGGAT
TGTTGAGATTTATAGATTGGCGACGATGAGGTATAAAGGTGATATCAATTTGTGGTTTAGGTATCTCGAGTTTTGTAAACAGAAGAGGCATGGAAGAATG
AAAAAGGTAAAAGATTTGAAATTTGCTGGTTGCTTTGTTAATGATTTGTCTTTGGTGGGTATATGTCGATGTTTAATTGCGTTTATATTATCTGAAACAT
GTGTAGGCATTGGCTCAAGCAATAAGGTTTCATCCAAAAGTGGCTGGAGTGTGGATATATGCTGCATCTTGGGAATTTGATAGAAACTTGAATGTTACAG
CAGCTCGTGCTCTTATGCTGAATGGGCTGAGAGTGTGTTCAAACTCTGAAGACCTGTGGTG
| Start of BLAST Alignment: | NT 7 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT < 3 / 5’ UTR |
BLAST Details: Query Sequence: 39002_AbBD Length: (1761 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F26K10 67169 4269 1.1e-186 1 F1N20 67139 550 9.4e-16 1 F26K10 67169 Length = 49,311 Minus Strand HSPs: Score = 4269 (646.6 bits), Expect = 1.1e-186, P = 1.1e-186 Identities = 859/864 (99%), Positives = 859/864 (99%), Strand = Minus / Plus Query: 1759 CCACAGGTCTTCAGAGTTTGAACACACTCTCAGCCCATTCAGCATAAGAGCACGAGCTGC 1700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16540 CCACAGGTCTTCAGAGTTTGAACACACTCTCAGCCCATTCAGCATAAGAGCACGAGCTGC 16599 Query: 1699 TGTAACATTCAAGTTTCTATCAAATTCCCAAGATGCAGCATATATCCACACTCCAGCCAC 1640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16600 TGTAACATTCAAGTTTCTATCAAATTCCCAAGATGCAGCATATATCCACACTCCAGCCAC 16659 Query: 1639 TTTTGGATGAAACCTTATTGCTTGAGCCAATGCCTACACATGTTTCAGATAATATAAACG 1580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16660 TTTTGGATGAAACCTTATTGCTTGAGCCAATGCCTACACATGTTTCAGATAATATAAACG 16719 Query: 1579 CAATTAAACATCGACATATACCCACCAAAGACAAATCATTAACAAAGCAACCAGCAAATT 1520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16720 CAATTAAACATCGACATATACCCACCAAAGACAAATCATTAACAAAGCAACCAGCAAATT 16779 Query: 1519 TCAAATCTTTTACCTTTTTCATTCTTCCATGCCTCTTCTGTTTACAAAACTCGAGATACC 1460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16780 TCAAATCTTTTACCTTTTTCATTCTTCCATGCCTCTTCTGTTTACAAAACTCGAGATACC 16839 Query: 1459 TAAACCACAAATTGATATCACCTTTATACCTCATCGTCGCCAATCTATAAATCTCAACAA 1400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16840 TAAACCACAAATTGATATCACCTTTATACCTCATCGTCGCCAATCTATAAATCTCAACAA 16899 Query: 1399 TCCTAGCCACACCGGCGAAATCAGATACTGATTTCTTCTTTCTCTTCTTAGTCACACGCG 1340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16900 TCCTAGCCACACCGGCGAAATCAGATACTGATTTCTTCTTTCTCTTCTTAGTCACACGCG 16959 Query: 1339 CCACCGATTTCCTCCGTAGCTGACGGAGCTCATCGAGCTTAACCTCATAGTCAATATAGG 1280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16960 CCACCGATTTCCTCCGTAGCTGACGGAGCTCATCGAGCTTAACCTCATAGTCAATATAGG 17019 Query: 1279 CTATGAAATCTTCTTTGAGTGGGCTTGGACGCTTGATCCGGTACTCAAACTTACGCCGCT 1220 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 17020 CTATGAAATCTTCTTTGAGTGGGCTTGGACGCTTGAGCCGGTACTCAAACTTACGCCGCT 17079 Query: 1219 GCTTCACGATCTCAGCTATCTCAGCACGAGTGAAGATTTCTCTTCGTTCTAGATCATCAA 1160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17080 GCTTCACGATCTCAGCTATCTCAGCACGAGTGAAGATTTCTCTTCGTTCTAGATCATCAA 17139 Query: 1159 GCTCGTCAACCATCCGCTCGAGGCGGTATTGAACTACGTCGGCCATGGCTGCTGCTTCTC 1100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17140 GCTCGTCAACCATCCGCTCGAGGCGGTATTGAACTACGTCGGCCATGGCTGCTGCTTCTC 17199 Query: 1099 GATTCTCGGCGGGGACTGATAACGGTAGGGCAAACGCTTAATGCTTCTTCTTCTTTCTTC 1040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17200 GATTCTCGGCGGGGACTGATAACGGTAGGGCAAACGCTTAATGCTTCTTCTTCTTTCTTC 17259 Query: 1039 AGTTATTATATAATGGGCCGTAAGAGTAAGAAGCTATTGGGCCTACGTCTAATTTTATCA 980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17260 AGTTATTATATAATGGGCCGTAAGAGTAAGAAGCTATTGGGCCTACGTCTAATTTTATCA 17319 Query: 979 CGGCCCAATGTTAAAACTCTTGCTATGAGCTATTTGTTGTTGTTCTGGGGGAAAAGCTTT 920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17320 CGGCCCAATGTTAAAACTCTTGCTATGAGCTATTTGTTGTTGTTCTGGGGGAAAAGCTTT 17379 Query: 919 AGAAGTTGAAGACG-CGAAGCGGC 897 |||||||||||||| ||| | || Sbjct: 17380 AGAAGTTGAAGACGACGATGACGC 17403 F1N20 67139 Length = 103,270 Plus Strand HSPs: Score = 550 (88.6 bits), Expect = 9.4e-16, P = 9.4e-16 Identities = 182/251 (72%), Positives = 182/251 (72%), Strand = Plus / Plus
Border_2 (39002_LBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCKCGMAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CTAGTRTWWGMCAGGAWAACTATNNAAGTTTGACCGCGNGANNTAGCNACGANNTCCTANAANAAAANANGNAGGATNAAAANNNGGGNNNATTTACCAG
GGTGCACANGAAGGGACTATCCGTAANNNTCATNTGTGTGANCGATGNCANCCTCAGGGTTAANCCTCNNTAACAANCNCTGANANGCCAAACTGACANA
GGCTAACGCCCNCTTGAANACAGAANAAATANNTGNCGCTACANGNANAGCGGGCCANANCNGACAGGACTATANNGATACCTNGCNACTNCCCCTGGAG
GCTCNCTCATGNGCTCTCCTGGAACTGACNTTCTGACACANCGGAGTCNTTCNAGCTGATATCCGCTCACAACANCCNNCCTAACCAGTAAAGAACGGGA
ATGCGCGTGACGCTTCGCGGNGACGCCATTTCGCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACAC
TAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGT
CAATTTGTCCGTTATCTTGCTATGAGCTATTTAGCTCTCTCTTCTTCTCTGTCTTCTCCTTCCTTCTTCTGCCGCAATTCTCGTATTCGTTTCTCTCCTG
TGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTTACAAATTCTCCGCCACAGTTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCCGGG
GAAGTTTCCAAGTGTGAGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCCAAAGGTGGGATTGAAGATGACGCGGAGCGATTTGCGAGACGA
GAGAGCACGATGCCTGATAGATTCAGATATTTGACCAAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGGTACGTTTCTGCTTACTTTTG
GCTTCGTTTTAGTTACCGTGAATCATAAGTCTTGTAGCAAAATCAAATTTTTGTTCTTGTTCTCAATCGCTGACTTTTT
| Start of BLAST Alignment: | NT 75 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 75 / Exon 1 of 2 |
BLAST Details: Query Sequence: 39002_LBU Length: (1279 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g28210 68417.t03754 expressed protein 1885 1.3e-80 1 >At4g28210 68417.t03754 expressed protein Length = 1459 Plus Strand HSPs: Score = 1885 (288.9 bits), Expect = 1.3e-80, P = 1.3e-80 Identities = 377/377 (100%), Positives = 377/377 (100%), Strand = Plus / Plus Query: 897 CCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTTACAAATTCTCCGCCACAG 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 CCTGTGTCGCGTATTTCTTCTCTTAATGGTGATAATAAGCTTACAAATTCTCCGCCACAG 149 Query: 957 TTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCCGGGGAAGTTTCCAAGTGTG 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 TTTTTAAATGCCGGCGCGAGTCTCCGTCGTTTTGTGGCTCCGGGGAAGTTTCCAAGTGTG 209 Query: 1017 AGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCCAAAGGTGGGATTGAAGAT 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 AGACTTAGGGTTTTGACGAGGTGCGAGAAAGAAAATGCACCCAAAGGTGGGATTGAAGAT 269 Query: 1077 GACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACC 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 GACGCGGAGCGATTTGCGAGACGAGAGAGCACGATGCCTGATAGATTCAGATATTTGACC 329 Query: 1137 AAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGGTACGTTTCTGCTTACT 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 AAAGAAGCTCCAGATAGTCCAATTATATGGCCATGGTTTGTTGGTACGTTTCTGCTTACT 389 Query: 1197 TTTGGCTTCGTTTTAGTTACCGTGAATCATAAGTCTTGTAGCAAAATCAAATTTTTGTTC 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 TTTGGCTTCGTTTTAGTTACCGTGAATCATAAGTCTTGTAGCAAAATCAAATTTTTGTTC 449 Query: 1257 TTGTTCTCAATCGCTGA 1273 ||||||||||||||||| Sbjct: 450 TTGTTCTCAATCGCTGA 466