At3g49240 SYNGENTA 39075
Genomic Sequence (from TAIR)
aataaatggataaattatttataaaataacagttataagatagaaaaaaaattactacggatgtggtacaacaaatttctcgttaagagagatatgggcc ggtcgaagtgccggcctctatagataagccggcaccgcgtatattacgcacaacgtattccgctctttttttgttacatcattgtgcagaatgcagattc ctaaccaaagaaaaagaaagtttttaaaaatatttaattataattatatgatgaaatcaagaatgggtcctccaaaaatcgagcttatggcccaataaag cccaaacgtaaatagccaagcccaagcatatttatccacgttcccaaacaatccctaaacctcatcatcatcatctccaaactcctaaaaccctaacaag aacccttatctctctcatttcctctgaaaggaatcatttttccactcagaaaatctcaaacatttcaaccATGTCGATTTCTAAAGCCGCCTTTTTAAAC CACCTTCAAACACTATCAAGATCCTACCGCCACCGTGTTCTGCCGCAGCCATTTCTCGCCGTCCGATACATGTCATTCGCGACTCAGGAAGAAGCCGCCG CTGAACGTCGCCGTCGTAAGCGTCGTCTTCGTATGGAGCCACCGGTTAATTCATTCAACAGATCTCAGCAACAACAATCTCAAATCCCTCGACCAATTCA AAACCCTAATATCCCGAAATTACCTGAATCTGTCTCTGCTCTCGTTGGGAAACGTCTCGATCTTCATAATCATATCCTGAAATTGATCCGAGAGAATGAT TTAGAAGAAGCTGCTCTGTACACTCGTCACTCTGTGTATTCGAATTGCCGTCCCACGATTTTCACTGTGAATACTGTTTTAGCGGCGCAGCTTCGACAAG CTAAGTATGGAGCGCTTCTGCAATTGCATGGATTCATTAATCAAGCTGGTATTGCACCTAATATCATCACATACAATTTGATATTCCAGGCTTATCTTGA TGTAAGGAAACCTGAAATTGCGTTGGAGCATTACAAGTTGTTTATAGATAATGCTCCATTGAATCCTTCTATTGCTACTTTTAGGATTTTAGTTAAGGGT TTAGTTAGTAATGACAATCTTGAGAAAGCAATGGAGATTAAAGAGGATATGGCTGTTAAAGGTTTTGTGGTGGATCCTGTTGTTTATAGTTATCTAATGA TGGGGTGTGTGAAGAATTCTGATGCTGATGGTGTGTTAAAGCTTTATCAGGAGTTAAAGGAGAAGCTTGGTGGGTTTGTTGATGATGGTGTGGTTTATGG GCAATTGATGAAGGGGTATTTCATGAAGGAGATGGAGAAAGAGGCTATGGAGTGTTATGAGGAAGCTGTTGGAGAGAATTCAAAGGTTAGGATGAGTGCT ATGGCTTATAATTATGTGCTGGAGGCTTTGAGTGAGAATGGGAAGTTTGATGAGGCTTTGAAGTTGTTTGATGCGGTGAAAAAGGAACATAATCCACCGA GGCATTTGGCTGTAAATTTGGGAACTTTTAATGTGATGGTTAATGGGTACTGTGCTGGAGGAAAGTTTGAGGAAGCTATGGAGGTTTTTAGGCAAATGGG TGATTTTAAGTGTAGTCCTGATACTTTATCGTTCAACAATCTGATGAATCAGCTGTGTGACAACGAGTTGTTGGCTGAGGCTGAGAAGCTTTATGGTGAA ATGGAAGAGAAAAATGTGAAGCCTGATGAGTACACATATGGTTTGTTAATGGATACTTGTTTCAAGGAAGGTAAGATAGATGAAGGAGCTGCGTATTACA AAACAATGGTTGAGTCTAATCTAAGACCAAATTTGGCTGTGTATAACCGTTTGCAAGATCAGTTGATCAAAGCTGGGAAACTCGACGATGCAAAATCTTT CTTCGATATGATGGTGAGCAAACTCAAGATGGACGATGAGGCTTACAAATTCATCATGAGGGCGTTAAGTGAAGCTGGTAGACTCGACGAGATGCTCAAG ATTGTGGATGAGATGCTGGATGATGACACGGTAAGAGTGAGTGAGGAACTGCAAGAGTTTGTGAAAGAAGAACTGAGGAAAGGAGGAAGAGAGGGAGATC TGGAGAAACTAATGGAAGAGAAAGAGAGATTGAAAGCAGAGGCAAAGGCGAAAGAGTTAGCAGATGCAGAAGAGAAGAAGAAGGCTCAAAGTATTAACAT AGCTGCATTAATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCAAAACTGCTTTGGGAAAACGAAGCTGGTGGTGTTGAAGAAGCCGATGTGGTG GAGATGGCTAAAGGAGTAGAAGCAGGTGGATCCAATGGTCAGGATCCACCGTCCTGCTGAtcttatttttttccttgaattcattagactctagttatct tcttatcattcaacttttatgtaattagggatttgtttgggacaataagctatgattaatcttttgctataatgcaggtgtttgc◄aaaatcttttttcc atgtttgcttttgatttcaaattaacatgctatgtagaacatttgttttagtggatggtctatgtaatcatttctttattactcaatttggtgcattata tacgtaacaagaaattgtaaatcttatccattt►gggacaaagatttgaa►gtgaggaaagactgtattccaactacatgaagcaatagaaactgagcat ctgattagaaagcctagaagattgattatgtacacagcaaactggtcaagtcaaaagcaaaacagacagagattggaaacagcataaccaaaactaaccg atctactacccttcaaggaaatttattaaaatctagtatatctgataagatgcattccatggaagcaatctatcaaaaacttagctggaaacaagttctt atagtcaaaataggcttcctacttatagtcaaaataggcttcctatagaagcaagggtcactgtaactccgagctctatgcttctttgcttgcttttttt TCATCTGGGTGTGTTCATTGGctggggcaccaccaacacataaacagaccaatgttagccatataaaactttcagatagaggtatttgaagctttgaatt aaaactgaaacaaagatatgatcatatagacaatttcatgatatgcttcaacagacatatactatgatagaagagaagggtcagaagatacatgaaaact agttttaatacCTGATTAGTGCATGAACTCTGAGCCAAGCATCGAACAAATTCTTCTTTCTTCTTGCCAAAGTTGAAGACGGCATGCTCACGGAGCACTT GCTCCCGCTTAATGTCCTCCAGCGTTTTCTCCTTTTTCCATTTCAGCTCTTTCATTTTCTTCTCCGCCTCACTATAGTTGTCCATCGTGCGAGAAGCAGT TGGCTTTGCAAATCTCACGTTCACCTCATCActgaaaatcatattgatttcagttcaggacagcggataagagcaagaaggaaatggaagaatccaaaga ggg
Border_1 (39075_LB1_Contig2_U)
ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCAGTATTAACATAGC
TGCATTAATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCAAAACTGCTTTGGGAAAACGAAGCTGGTGGTGTTGAAGAAGCCGATGTGGTGGAG
ATGGCTAAAGGAGTAGAAGCAGGTGGATCCAATGGTCAGGATCCACCGTCCTGCTGATCTTATTTTTTTCCTTGAATTCATTAGACTCTAGTTATCTTCT
TATCATTCAACTTTTATGTAATTAGGGATTTGTTTGGGACAATAAGCTATGATTAATCTTTTGCTATAATGCAGGTGTTTGCAAAATCTTTTTTCCATGT
TTGCTTTTGATTTCAAATTAACATGCTATGTAGAACATTTGTTTTAGTGGATGGTCTATGTAATCATTTCTTTATTACTCAATTTGGTGCATTATATACG
TAACAAGAAATTGTAAATCTTATCCATTTGGGACAAAGATTTGAAGTGAGGAAAGACTGTATTCCAACTACATGAAGCAATAGAAACTGAGCATCTGATT
AGAAAGCCTAGAAGATTGATTATGTACACAGCAAACTGGTCAAGTCAAAAGCAAAACAGACAGAGATTGGAAACAGCATAACCAAAACTAACCGATCTAC
TACCCTTCAAGGAAATTTATTAAAATCTAGTATATCTGATAAGATGCATTCCAT
| Start of BLAST Alignment: | NT > 125 / 3’ UTR |
| First 15 bp Perfect Match: | NT > 125 / 3’ UTR |
BLAST Details: Query Sequence: 39075_LB1_Contig2_U reverse complement Length: (754 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g49240 68416.t04998 pentatricopeptide (PPR) repeat-con... 1480 1.8e-62 1 At3g49250 68416.t04999 expressed protein 1060 1.8e-42 1 At5g55250 68418.t06392 S-adenosyl-L-methionine:carboxyl m... 236 0.027 1 At1g65960 68414.t06861 glutamate decarboxylase 2 (GAD 2) ... 206 0.53 1 >At3g49240 68416.t04998 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2122 Minus Strand HSPs: Score = 1480 (228.1 bits), Expect = 1.8e-62, P = 1.8e-62 Identities = 296/296 (100%), Positives = 296/296 (100%), Strand = Minus / Plus Query: 668 AGTATTAACATAGCTGCATTAATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCA 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1827 AGTATTAACATAGCTGCATTAATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCA 1886 Query: 608 AAACTGCTTTGGGAAAACGAAGCTGGTGGTGTTGAAGAAGCCGATGTGGTGGAGATGGCT 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1887 AAACTGCTTTGGGAAAACGAAGCTGGTGGTGTTGAAGAAGCCGATGTGGTGGAGATGGCT 1946 Query: 548 AAAGGAGTAGAAGCAGGTGGATCCAATGGTCAGGATCCACCGTCCTGCTGATCTTATTTT 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1947 AAAGGAGTAGAAGCAGGTGGATCCAATGGTCAGGATCCACCGTCCTGCTGATCTTATTTT 2006 Query: 488 TTTCCTTGAATTCATTAGACTCTAGTTATCTTCTTATCATTCAACTTTTATGTAATTAGG 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2007 TTTCCTTGAATTCATTAGACTCTAGTTATCTTCTTATCATTCAACTTTTATGTAATTAGG 2066 Query: 428 GATTTGTTTGGGACAATAAGCTATGATTAATCTTTTGCTATAATGCAGGTGTTTGC 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2067 GATTTGTTTGGGACAATAAGCTATGATTAATCTTTTGCTATAATGCAGGTGTTTGC 2122 >At5g55250 68418.t06392 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to SAM:jasmonic acid carboxyl methyltransferase (JMT)[GI:13676829] and to SAM:benzoic acid carboxyl methyltransferase (BAMT)[GI:9789277][Antirrhinum majus] Length = 3396 Minus Strand HSPs: Score = 236 (41.5 bits), Expect = 0.027, P = 0.027 Identities = 192/319 (60%), Positives = 192/319 (60%), Strand = Minus / Plus
Border_2 (39075_AbB_U_aux39075_3_jm33_ab1)
AATCAATTNATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTCACANCTNATTCATGANGTGC
TTAGCAGAACGTGGATCCATCCCTGGCANNANCACCNTNANAGAGGANNGNAANCGAGCAACTGCTTGACAGAAANCTNAGGGCCTTNNCAGTCNTGANA
NCCGGACGCTGTNTNTAAGNCNTATGGNGGNTAAGCAGNCGGATCCAANGTTNCGGATNCNCCGANCTNCTGNNCTTATCTNCNTANTNGAAAACAGTAC
ACNCGAAATGACACCCNCNCTTGAANCTGNNCACGTANGTNGGGAAGATGGTTGATGACATCACATCTATGCATTATTCACNNTGATATANGCGCAGGCT
GNTGGGCAAAGGTCTTTGNTAGGCATGGTCCACTCCGCNATNGTCNNNNTAANNNNNTTNNNCTNTANCATNATGGCTNNAGGGATGGGCTATNTNTACT
ATTTACTTTCATNNCNNANGGCTATAGCNCTACTATANAGCACANCGANATAAGGAANTCTNTCCCCCNCNCCGGGNACAAAAGATTTTGAAAGTGAGGA
AAGACTGTATTCCAACCTACATGAAGCAATAGAAACTGAGCATCTGATTAGAAAGCCTAGAAGATTGATTATGTACACAGCAAACTGGTCAAGTCAAAAG
CAAAACAGACAGAGATTGGAAACAGCATAACCAAAACTAACCGATCTACTACCCTTCAAGGAAATTTATTAAAATCTAGTATATCTGATAAGATGCATT
| Start of BLAST Alignment: | NT > 272 / Downstream |
| First 15 bp Perfect Match: | NT > 288 / Downstream; 3’ UTR of At3g49250 |
BLAST Details: Query Sequence: 39075_AbB_U_aux39075_3_jm33_ab1 Length: (799 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F2K15 67266 1058 1.3e-41 1 F5H8 67722 509 8.3e-17 1 F24C7 67720 509 8.3e-17 1 K7M2 60539 500 2.1e-16 1 F2K15 67266 Length = 129,757 Plus Strand HSPs: Score = 1058 (164.8 bits), Expect = 1.3e-41, P = 1.3e-41 Identities = 220/225 (97%), Positives = 220/225 (97%), Strand = Plus / Plus Query: 575 GGNACAAAAGATTTTGAAAGTGAGGAAAGACTGTATTCCAACCTACATGAAGCAATAGAA 634 || ||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 60905 GGGACAAA-GATTT-GAA-GTGAGGAAAGACTGTATTCCAAC-TACATGAAGCAATAGAA 60960 Query: 635 ACTGAGCATCTGATTAGAAAGCCTAGAAGATTGATTATGTACACAGCAAACTGGTCAAGT 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60961 ACTGAGCATCTGATTAGAAAGCCTAGAAGATTGATTATGTACACAGCAAACTGGTCAAGT 61020 Query: 695 CAAAAGCAAAACAGACAGAGATTGGAAACAGCATAACCAAAACTAACCGATCTACTACCC 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61021 CAAAAGCAAAACAGACAGAGATTGGAAACAGCATAACCAAAACTAACCGATCTACTACCC 61080 Query: 755 TTCAAGGAAATTTATTAAAATCTAGTATATCTGATAAGATGCATT 799 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61081 TTCAAGGAAATTTATTAAAATCTAGTATATCTGATAAGATGCATT 61125 F5H8 67722 Length = 80,098 Minus Strand HSPs: Score = 509 (82.4 bits), Expect = 8.3e-17, P = 8.3e-17 Identities = 201/325 (61%), Positives = 201/325 (61%), Strand = Minus / Plus