At4g02980 SYNGENTA 39127
Genomic Sequence (from TAIR)
TCCAGCTTAAACCCCAAAACTTCTGGATACCTCTCAAGCACCCGAGGTACATCACTCGGTTTAATATCCAGTCCTTGAAGATACTTAACCACCGGTGCAA GATCTATAACAACGCTAGAGTGAAGAACCTGCGGGTATCTTCTAAGAAACTCAGTGAAAGTCGATTTCCTGACGCCTAGTTTCCCGAGATAATCAAGAAC CGGAACCATGTTCTTCTTCACGCTACAACCAAGAACAAGAGGGTAATTGTTGATATCTTCAATGGTAAGCCCTAACTTGTGAAGAAACTCGACACGCTCT TTCATCACATCAGCTGTTACAGGGAGTTCAAGGCCATCAAGCTCATCAGGAACAATCCCAATCCCACGCAAGAACTCATAAACCTTAGCACGATTAGCAG CTTTCTCCTTATTCATATCTAACAAACTAGGACGACTATACAAAGACTTAGAATCTCTTCCCTTATCCTTATCTCTATCCCTATCCCTTCCCGAAGAAGA AGAAGAACGAGAAGACCTTTCTCTTCTCGGTGAATCCAAAGAACGTGAAGAAAATCTCCGATTTGCAATAGCGCATTGAACAGTTAGACCAATTCCAGTC CCAGGTCTCTTCTTGTGGTTGCATAAGTTGCCATAAGTGGAATCAGAGAGTGAACGAGATCTAACGGCAAAAAAAGATGGTGGCTCAAAGTGAACTAGCA AAAACCCAGGCTTTGTGAAGCCATTACAGAACCTAATCTTCATtctttacctgcacaaaaacggaacaacactaaaatcgacgattatcaacgagaaaat cataccaattcggactaacccagacaattttacagtacaattagctcagaaaactccgaaaaaataccatcattcatgttcatgttaacatcaacgaacc aaaaaaccataacctaactagaagcaaaccacagaaactatggaataaggagaattggaccagcgtgtgattgaaatctcaccggagc◄tg◄agga►aag atatcggagaagacg►agggttttagaggagcgggtaaggttttttcctcatcacacaacaaagtcactctctttctccattgaaatgatttatccgaat tattgacgttctcccccttatttcttatatttcccattattgccctatactatctgaaattatcacattaaaccaatacgtatatgattactttggatgt gatataaattaataaaaaaactatatatcatcaaaactttctcttaatatttctaaaattaattaattccctccttttatcttcaacattggattatcga aaatgaaaaatagtattttctgactcttttttatagtatcgggtttaattcagaaatatataaagctttggggtctgtttcgaagtatctttactctttt aacagttctgagacttctaaagagaggaaaattagttcgtcgaagcatcgagaaaATGATCGTACTTTCTGTTGGTTCCGCTTCTTCATCTCCGATCGTC GTCGTCTTTTCCGTCGCGCTTCTTCTGTTCTACTTCTCTGAAACTTCTCTAGGAGCTCCTTGTCCCATCAATGgtgcgtttcgcctgttttcatccctac tcgccattagattgtatctagttatattgtgaatgcagatttcatcttgtttatctatgtatcagtgatagaatctaaggtcttagttagctgtgaaatc gtatgtcctggtagaatcagatggaccaaaatgtgctgaacttgtgattgattttaactctaaattaggtttatggaggtgtttcagaatgcttcatagt gaatttggttgctgatatggtacagattcgctgcaatttcatcgatctgtagcttattagaggatccaaaatttgtttagaaatgcttacatagcttaaa tacttagaaattgtgatgttaatactggttcttgactcttgaatggtgattctagGCTTGCCAATCGTGAGGAATATTAGTGACCTTCCTCAGGATAACT ATGGAAGACCAGGTCTTTCCCACATGACTGTTGCTGGCTCCGTATTGCATGGAATGAAAGAGgtaatgttcaaagctgatagaggtttaaaactctttcc attggtatccgctcggctcttatctgtgttttttcatggttggatgttcagGTTGAAATATGGCTTCAGACATTTGCTCCAGGTTCAGAGACACCAATTC ACAGGCACTCCTGTGAAGAGGTTTTTGTTGTCCTAAAGGGCAGTGGTACTCTGTATCTCGCTGAAACACATGGAAATTTCCCTGGGAAACCAATCGAATT TCCAATCTTTGCCAACAGTACAATTCATATTCCGATCAATGATGCTCATCAGgtatctctttctacctcccacatcgtttcagatgacttggctctttcc ttgattcttagagtttgaaatcctagattgttagagtttcccctttaattgtaatcttgattgagggcaaaagaaactccatgtaaggctgatgataaac aatccaatttcgtatgcaacagatgttagttgagcaaaaacatactattatgtttaagattgcttgagagtgttagaggtgccgcaggtcctatgtcaca tgtagagacaattattagaaaactgaccttttcgctaacgttgtgtatattcttatgaatcagtgaaagatgacgttttcttctgctaaaataacttttg tgttatcttatgaaactagctcacaatcatctattacggttcttacagGTCAAAAACACCGGTCATGAGGACCTGCAGGTGTTGGTTATCATATCTCGGC CGCCTATTAAAATgtatgtaacatcctttttgaggaatttgcttatagatcattatgtgtagatgtatccttttactaatcgtttgtttttaaatagCTT CATCTACGAAGACTGGTTTATGCCACACACTGCTGCAAGGCTGAAGTTCCCTTACTATTGGGATGAGCAATGCATTCAAGAATCACAAAAAGACGAGCTT TAAagcaaagtccgaggctaaaagcaagcacaacctttagatagtaaaatcatagttgaggttttgtgacactacgtagatactggtaaattggcaagga ttttacatgaatgttgttgttaccagaaagtaaataaatgttcaatctttgatgttcttaagtaagtgagtcctattggtcatgaaaatatgtaagtgtg cacatcttgattgcatttgcgataaatttatagagtttcactcacttttattttcctcttctatattcaaatcatagctcttcgaagacaagaggacatc agaatcatagctttttttgtgtcttgtcttgatatatatatacctcttcgaagaagttgatgatgcagtcgtttattttgtctccatgtgagaaagtgat caatgacactcacaaatctagtagtggctgaattggctcgatgttaaatgcaaactaacgaagtctcatcaaataataactcttcttcttgcatttgctt tctttgcccctttctctcttcttccatctcaaatctgtctcttcaatattactattgggcttttggttagtctataatgggactcaaaataaggctttgg ccca
Border_1 (39127_AbB_D)
TGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCC
AGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCA
GCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGT
AAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAG
CGTCGATTTTTGTGAGCTGATACCGCTCCGGTGAGATTTCAATCACACGCTGGTCCAATTCTCCTTATTCCATAGTTTCTGTGGTTTGCTTCTAGTTAGG
TTATGGTTTTTTGGTTCGTTGATGTTAACATGAACATGAATGATGGTATTTTTTCGGAGTTTTCTGAGCTAATTGTACTGTAAAATTGTCTGGGTTAGTC
CGAATTGGTATGATTTTCTCGTTGATAATCGTCGATTTTAGTGTTGTTCCGTTTTTGTGCAGGTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAA
AGCCTGGGTTTTTGCTAGTTCACTTTGAGCCACCATCTTTTTTTGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATGGCAACTTATGCAACCACAA
GAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCGCTATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGATTCACCGAGAAGAGAAAGGTCT
TCTCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAGATTCTAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGA
ATAAGGAGAAAGCTGCTAATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATGGCCTTGAACTCCCTGACACA
| Start of BLAST Alignment: | NT < 461 / Upstream at 5’ UTR of At4g02990 |
| First 15 bp Perfect Match: | NT < 463 / Upstream at 5’ UTR of At4g02990 |
BLAST Details: Query Sequence: 39127_AbB_D Length: (1098 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T4I9 67049 3353 2.8e-145 1 F11P10 67974 211 0.83 1 T5E15 67975 211 0.83 1 T5E7 45986 206 0.95 1 T4I9 67049 Length = 98,913 Plus Strand HSPs: Score = 3353 (509.1 bits), Expect = 2.8e-145, P = 2.8e-145 Identities = 673/676 (99%), Positives = 673/676 (99%), Strand = Plus / Plus Query: 423 CCGCTCCGGTGAGATTTCAATCACACGCTGGTCCAATTCTCCTTATTCCATAGTTTCTGT 482 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37484 CAGCTCCGGTGAGATTTCAATCACACGCTGGTCCAATTCTCCTTATTCCATAGTTTCTGT 37543 Query: 483 GGTTTGCTTCTAGTTAGGTTATGGTTTTTTGGTTCGTTGATGTTAACATGAACATGAATG 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37544 GGTTTGCTTCTAGTTAGGTTATGGTTTTTTGGTTCGTTGATGTTAACATGAACATGAATG 37603 Query: 543 ATGGTATTTTTTCGGAGTTTTCTGAGCTAATTGTACTGTAAAATTGTCTGGGTTAGTCCG 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37604 ATGGTATTTTTTCGGAGTTTTCTGAGCTAATTGTACTGTAAAATTGTCTGGGTTAGTCCG 37663 Query: 603 AATTGGTATGATTTTCTCGTTGATAATCGTCGATTTTAGTGTTGTTCCGTTTTTGTGCAG 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37664 AATTGGTATGATTTTCTCGTTGATAATCGTCGATTTTAGTGTTGTTCCGTTTTTGTGCAG 37723 Query: 663 GTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCA 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37724 GTAAAGAATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCA 37783 Query: 723 CTTTGAGCCACCATCTTTTTTTGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATGG 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37784 CTTTGAGCCACCATCTTTTTTTGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATGG 37843 Query: 783 CAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCGC 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37844 CAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCGC 37903 Query: 843 TATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGATTCACCGAGAAGAGAAAGGTCTTC 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37904 TATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGATTCACCGAGAAGAGAAAGGTCTTC 37963 Query: 903 TCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAGATTC 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37964 TCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAGATTC 38023 Query: 963 TAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTAATCG 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38024 TAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTAATCG 38083 Query: 1023 TGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATGGCCT 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38084 TGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATGGCCT 38143 Query: 1083 TGAACTCCCTGACACA 1098 ||||||||||| ||| Sbjct: 38144 TGAACTCCCTGTAACA 38159 F11P10 67974 Length = 105,589 Plus Strand HSPs: Score = 211 (37.7 bits), Expect = 1.8, P = 0.83 Identities = 181/314 (57%), Positives = 181/314 (57%), Strand = Plus / Plus
Border_2 (39127_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTAAGTTGCCTAAGGGTTTTAGAGGAGCGGGTAAGGTTTTTTCCTCATCACACAACAAAGTCACTCTCTTTCTCCATTGAAATGATTTATCCGAATTAT
TGACGTTCTCCCCCTTATTTCTTATATTTCCCATTATTGCCCTATACTATCTGAAATTATCACATTAAACCAATACGTATATGATTACTTTGGATGTGAT
ATAAATTAATAAAAAAACTATATATCATCAAAACTTTCTCTTAATATTTCTAAAATTAATTAATTCCCTCCTTTTATCTTCAACATTGGATTATCGAAAA
TGAAAAATAGTATTTTCTGACTCTTTTTTATAGTATCGGGTTTAATTCAGAAATATATAAAGCTTTGGGGTCTGTTTCGAAGTATCTTTACTCTTTTAAC
AGTTCTGAGACTTCTAAAGAGAGGAAAATTAGTTCGTCGAAGCATCGAGAAAATGATCGTACTTTCTGTTGGTTCCGCTTCTTCATCTCCGATCGTCGTC
GTCTTTTCCGTCGCGCTTCTTCTGTTCTACTTCTCTGAAACTTCTCTAGGAGCTCCTTGTCCCATCAATGGTGCGTTTCGCCTGTTTTCATCCCTACTCG
CCATTAGATTGTATCTAGTTATATTGGGAATGCAGATTTCATCTTGTTTA
| Start of BLAST Alignment: | NT < 457 / Upstream at 5’ UTR of At4g02990 |
| First 15 bp Perfect Match: | NT < 439 / Upstream at 5’ UTR of At4g02990 |
BLAST Details: Query Sequence: 39127_LBU Border #2 Length: (850 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T4I9 67049 3183 1.3e-137 1 MJB21 67769 267 0.0027 1 F11M15 50723 266 0.0031 1 MNA5 67924 259 0.0065 1 T4I9 67049 Length = 98,913 Minus Strand HSPs: Score = 3183 (483.6 bits), Expect = 1.3e-137, P = 1.3e-137 Identities = 647/657 (98%), Positives = 647/657 (98%), Strand = Minus / Plus Query: 850 TAAACAAGATGAAATCTGCATTCCCAATATAACTAGATACAATCTAATGGCGAGTAGGGA 791 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 36825 TAAACAAGATGAAATCTGCATTCACAATATAACTAGATACAATCTAATGGCGAGTAGGGA 36884 Query: 790 TGAAAACAGGCGAAACGCACCATTGATGGGACAAGGAGCTCCTAGAGAAGTTTCAGAGAA 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36885 TGAAAACAGGCGAAACGCACCATTGATGGGACAAGGAGCTCCTAGAGAAGTTTCAGAGAA 36944 Query: 730 GTAGAACAGAAGAAGCGCGACGGAAAAGACGACGACGATCGGAGATGAAGAAGCGGAACC 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36945 GTAGAACAGAAGAAGCGCGACGGAAAAGACGACGACGATCGGAGATGAAGAAGCGGAACC 37004 Query: 670 AACAGAAAGTACGATCATTTTCTCGATGCTTCGACGAACTAATTTTCCTCTCTTTAGAAG 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37005 AACAGAAAGTACGATCATTTTCTCGATGCTTCGACGAACTAATTTTCCTCTCTTTAGAAG 37064 Query: 610 TCTCAGAACTGTTAAAAGAGTAAAGATACTTCGAAACAGACCCCAAAGCTTTATATATTT 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37065 TCTCAGAACTGTTAAAAGAGTAAAGATACTTCGAAACAGACCCCAAAGCTTTATATATTT 37124 Query: 550 CTGAATTAAACCCGATACTATAAAAAAGAGTCAGAAAATACTATTTTTCATTTTCGATAA 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37125 CTGAATTAAACCCGATACTATAAAAAAGAGTCAGAAAATACTATTTTTCATTTTCGATAA 37184 Query: 490 TCCAATGTTGAAGATAAAAGGAGGGAATTAATTAATTTTAGAAATATTAAGAGAAAGTTT 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37185 TCCAATGTTGAAGATAAAAGGAGGGAATTAATTAATTTTAGAAATATTAAGAGAAAGTTT 37244 Query: 430 TGATGATATATAGTTTTTTTATTAATTTATATCACATCCAAAGTAATCATATACGTATTG 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37245 TGATGATATATAGTTTTTTTATTAATTTATATCACATCCAAAGTAATCATATACGTATTG 37304 Query: 370 GTTTAATGTGATAATTTCAGATAGTATAGGGCAATAATGGGAAATATAAGAAATAAGGGG 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37305 GTTTAATGTGATAATTTCAGATAGTATAGGGCAATAATGGGAAATATAAGAAATAAGGGG 37364 Query: 310 GAGAACGTCAATAATTCGGATAAATCATTTCAATGGAGAAAGAGAGTGACTTTGTTGTGT 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37365 GAGAACGTCAATAATTCGGATAAATCATTTCAATGGAGAAAGAGAGTGACTTTGTTGTGT 37424 Query: 250 GATGAGGAAAAAACCTTACCCGCTCCTCTAAAACCCTTAGGCAACTTAGGATATATT 194 ||||||||||||||||||||||||||||||||||||| | | || | |||| || Sbjct: 37425 GATGAGGAAAAAACCTTACCCGCTCCTCTAAAACCCTC-GTCTTCTCCG-ATATCTT 37479 MJB21 67769 Length = 88,369 Minus Strand HSPs: Score = 267 (46.1 bits), Expect = 0.0028, P = 0.0027 Identities = 321/585 (54%), Positives = 321/585 (54%), Strand = Minus / Plus