At4g10760 SYNGENTA 41510
Genomic Sequence (from TAIR)
agagcttcgatttttagggttaacggttcacctctgctatattttttttatcagaattcaactccaacaaactaaatcactttccgtgataaagaaaaga aaagtgcaaaaatttggattttgttgatccaaaataaaatacaaagaactgaaatcttaaaatcatatactaaactagttgttatttgtaaatttcttat aaccctttcttacatttttaaattaccctacatataactttttcttacatttttaaaatatcctacaattatctaactaaacacccaaaaatatttttac cgttttatgttatcaacttatcatcgtgtccgacaaaaaaaaaaaaacttatcatcgtgctcctttacatttttcgtgacctaaaactgctacgacatcg ttttagtgacttacttgctaaaaccctttttaactttctttcaagctaaagacctgcacaaactctctctcgaattcttttgtttcgaagccATGGAAAC TGAATCTGATGACGCCACCATTACCGTCGTCAAAGACATGAGAGTTCGATTAGAGAATCGAATTCGAACCCAACACGACGCTCACTTAGATCTCCTTTCC TCACTCCAATCCATTGTTCCCGATATAGTCCCATCTCTCGATCTCTCACTCAAACTCATCTCTTCTTTCACGAATCGACCTTTCGTAGCTACACCACCAT TACCAGAACCCAAAGTTGAGAAGAAGCATCATCCGATTGTTAAATTAGGAACCCAACTGCAACAATTACATGGGCATGATTCAAAATCGATGCTTGTTGA TTCGAATCAGAGAGATGCTGAAGCTGATGGGTCTAGTGGGAGTCCTATGGCGCTTGTTAGAGCTATGGTTGCTGAGTGTTTGCTTCAACGTGTACCGTTT TCTCCTACGGATTCTTCTACTGTGCTTAGGAAGCTTGAGAATGACCAGAATGCTAGACCGGCGGAGAAGGCGGCGTTACGAGATTTAGGCGGTGAATGTG GACCGATTCTTGCGGTGGAGACCGCACTTAAATCGATGGCGGAAGAGAATGGTTCTGTGGAATTGGAAGAGTTTGAGGTTAGTGGGAAGCCTAGGATCAT GGTTTTAGCTATAGATAGAACTAGATTGCTTAAAGAGTTACCAGAGAGTTTCCAAGGGAATAACGAATCGAATCGGGTTGTCGAAACGCCTAATTCAATT GAGAATGCTACTGTTTCTGGTGGCGGGTTTGGTGTTTCCGGGTCGGGTAATTTCCCGAGACCTGAGATGTGGGGAGGTGATCCTAATATGGGGTTTAGGC CAATGATGAATGCACCAAGAGGAATGCAAATGATGGGAATGCATCATCCAATGGGGATAATGGGTAGACCACCACCATTTCCTTTGCCTTTGCCGTTGCC TGTACCGTCGAATCAGAAGCTTAGAAGTGAGGAAGAGGATTTGAAAGATGTTGAGGCTCTTTTGAGTAAGAAGTCTTTTAAGGAGAAGCAACAGTCTAGG ACAGGTGAGGAGTTGCTTGATCTGATTCACCGTCCAACCGCTAAAGAAGCCGCTACTGCTGCTAAGgtgaactcagttaactatagtctttagttaaata catgcttttttaatacaaaactatatgtgaatgtaaatgtgagtatataagctttcaaaaggaattgaggaggaaaacacatagtgtagttcacagcaga ctagataagttgttgatccaaagctgtgttaatttggcgtagatagcggattagatagtgtatgattcgtgaacaagttctggagaaagctattagccat cttagtagttagtatccatagtagtttgttatcaagattataggggagcagatactatgccattttgtgaaaagcagtagggtgaaaagcaaagagctat ataacttagatgtgtgtttcttcggtttggatgctgatagtgatgctcctatgtggccatatgttctgaaagcaaggagccttctattgaaaataatcac cttacggatctagatgcttaatgtttataagcgtgtttaactagttatcacaacacttgtgtgttttgtctctcagtgtggggtggggttgaaagttttt gatacatagtttctactttctagtttcaatatcgatgtagcgaaagcaaagatctctttccacaaaacttgtgtgtttgttgtgactttctctcttggta tcttgtgagacctgtcactgtttctagcctcaactcttctaggtgttatgttttgttagttttcatttcatcttctaataaacagcttggatcttgtgat tgactgttatatttttatgttccttacagTTTAAAAGCAAAGGAGGATCACAGGTTAAGTATTACTGTAGGTATTTAACTAAAGAGGATTGCCGTCTTCA GTCTGGTTCTCACATAGCCTGCAACAAGgtttgaaccaactcaaatttacaatgtacatcttatttgataggaaattcagaatgttatattgttaagaat tccatagcgaacaaattaggattggtttgcatgtcaagttttttgtttgttattttgtgaggtttatattgatctcctgctatggtgtctatgttgcttt gctgaaatctacttagtttttatgaattctgtatactttcagAGACATTTCCGTCGACTAATCGCTTCACATACTGACGTTAGCCTAGGAGATTGTTCCT TTCTCGATACTTGTCGTCACATGAAGgtaacttttttttggtcacaattgtgtgatagtacttcggttaagtgtagatatatggtaacagagcaaccatt attttgaatttggacagACTTGCAAATACGTGCATTACGAGCTCGACATGGCTGACGCTATGATGGCTGGTCCAGATAAGGCATTGAAGCCTCTACGTGC TGATTACTGTTCTGAAGCTGAACTTGGTGAGGCACAATGGATTAACTGTGACATCCGTTCTTTTCGAATGGACATTTTGGGAACCTTTGGAGTTGTTATG GCGGATCCACCATGGGACATTCACATGGAACTTCCATATGGAACAATGGCTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTT TGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtacttagaaaaatctcaacaaattttgtgttcatgtgcttttccactcta atggagttttttttttttttttaagTTTGGAGCTTTGGGGATACAAGCGAGTGGAAGAGATCATATGGGTAAAGACAAATCAACTTCAACGTATTATTCG AACAGGAAGAACAGGTCACTGGCTCAACCATAGCAAAGAGCATTGTCTGGTTGGAATCAAAGGAAATCCAGAAGTGAACAGAAACATCGACACAGATGTG ATTGTCGCAGAGGTTAGAGAAACAAGCCGGAAGCCAGACGAGgtttgtccataattacccacatttttccaaatcgtttcgaattagtatgattctggac tcttgtgtgatgagaatgcttgtcaaccaccagATGTATGCAAT◄GTTAGAGAGGATCATGCCAAGAGCAAGAAAGCTCGAGTTATTCGCCC►GTATGCA CAATGCTCATGCCGGgtaaagtttttgaccttttaactgtcatatgatattgttgtcatgaatcttatgagtctactgttggttatagATGGCTATCACT TGGGAA◄CCAGCTTAACGGTGTCCGATTAATAAACGAAGGTCTTCGAGCTCGGTTTAAAGCATCATACCCTGAAATAGATGTCCAGCCACCATCACCACC AAGAGCCTCTGCAATGGAAACAGACAACGAACCAATGGCTATTGACTCAATCACAGCTTAGttcaattccaaaaaaaacaaagccaaatgtctcagcttt gttggattcatgttgctttcgtttttgaaacatttgtggcatcatgattttgtaaatctttatggaaagttaaaaggaaacaacattaacgaaatttgaa attttgcttattcgctccagtacttctcatcatcaacatctttatcatgttccgacgaatcctcactgtccgattcattgaccaaacccatcttgaatct cctcacatcttcaacagcagcattcctaaacaatccaacatcaacagctccggcgaccatatggtaaccacgtccccgaatctcaccagctccgtcgtgc ggcatcgcgaaacccgacaagtaagccccgcctttcgccggatcagtggtcagcacagatttctcagccttcttcatcatctctctcactttcttatgtc caggatcccacaaataccctaaactcgcactaagatccaacggtcccatttgcacacagtcaacaccatcaacggctgcgatttcatcagctttcttcac tccttcacctgattccacctggcacataatcagaatctcctctgcgtaattacttaaatacccttcatcgattccgtagttagaagctctcaccaccgtg tgc
Border_1 (41510_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATC:AATT:AATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAATTGCATACATCTGGTGGTTGACAAGCATTCTCATCACACAAGAGTCCAGAATCATACTAATTCGAAACGATTTGGAAAAATGTGGGTAATTATG
GACAAACCTCGTCTGGCTTCCGGCTTGTTTCTCTAACCTCTGCGACAATCACATCTGTGTCGATGTTTCTGTTCACTTCTGGATTTCCTTTGATTCCAAC
CAGACAATGCTCTCTGC
| Start of BLAST Alignment: | NT 3212 / Exon 7 of 7 |
| First 15 bp Perfect Match: | NT 3052 / Exon 6 of 7 |
BLAST Details: Query Sequence: 41510_LB2 Length: (415 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g10760 68417.t01671 methyltransferase MT-A70, putative... 1054 5.4e-42 1 At2g05642 68415.t00547 expressed protein 181 0.91 1 At5g08400 68418.t00907 expressed protein predicted protei... 173 0.998 1 >At4g10760 68417.t01671 methyltransferase MT-A70, putative similar to (N6-adenosine)-methyltransferase [Mus musculus] GI:10179948, m6A methyltransferase (MT-A70) [Homo sapiens] GI:2460037; contains Pfam profile PF05063: MT-A70 (S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase)) Length = 3868 Minus Strand HSPs: Score = 1054 (164.2 bits), Expect = 5.4e-42, P = 5.4e-42 Identities = 302/383 (78%), Positives = 302/383 (78%), Strand = Minus / Plus Query: 415 GCAGAGAGCATTGTCTGGTTGGAATCAAAGGAAATCCAGAAGTGAACAGAAACATCGACA 356 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2880 GCAAAGAGCATTGTCTGGTTGGAATCAAAGGAAATCCAGAAGTGAACAGAAACATCGACA 2939 Query: 355 CAGATGTGATTGTCGCAGAGGTTAGAGAAACAAGCCGGAAGCCAGACGAGGTTTGTCCAT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2940 CAGATGTGATTGTCGCAGAGGTTAGAGAAACAAGCCGGAAGCCAGACGAGGTTTGTCCAT 2999 Query: 295 AATTACCCACATTTTTCCAAATCGTTTCGAATTAGTATGATTCTGGACTCTTGTGTGATG 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3000 AATTACCCACATTTTTCCAAATCGTTTCGAATTAGTATGATTCTGGACTCTTGTGTGATG 3059 Query: 235 AGAATGCTTGTCAACCACCAGATGTATGCAAT-TCAG-GAT-ATATTGTGGTGTA-AACA 180 |||||||||||||||||||||||||||||||| | || || || || | || | Sbjct: 3060 AGAATGCTTGTCAACCACCAGATGTATGCAATGTTAGAGAGGATCATGCCAAGAGCAAGA 3119 Query: 179 AAT-T-GACGCTTAGACAACTTAATAACACATTGCGGACGTTTT-TAATGTACT-GAA-T 125 || | || | ||| | | || |||| ||| | | ||| || | || | Sbjct: 3120 AAGCTCGA-G-TTATTCGCCCGTATG-CACAATGCTCATGCCGGGTAAAGTTTTTGACCT 3176 Query: 124 TAACGCCGAATTAATTGATTTGGTGTATCGAGATTGGTTATGAAATTCAGATGCTAGTGT 65 | | | || |||| | || | || || | |||||| | | || | || | Sbjct: 3177 TTTAACTGTCATA--TGATATTGT-TGTCATGAATC-TTATGAGTCT-AC-TGTTGGT-T 3229 Query: 64 AATGTATTGGTA--ATTTGGGAA 44 | | || | || | ||||||| Sbjct: 3230 ATAG-ATGGCTATCACTTGGGAA 3251 >At2g05642 68415.t00547 expressed protein Length = 2615 Plus Strand HSPs: Score = 181 (33.2 bits), Expect = 2.4, P = 0.91 Identities = 215/383 (56%), Positives = 215/383 (56%), Strand = Plus / Plus
Border_2 (41510_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCAGATGTATG
CACAATGCTCATGCCGGGTAAAGTTTTTGACCTTTTAACTGTCATATGATATTGTTGTCATGAATCTTATGAGTCTACTGTTGGTTATAGATGGCTATCA
CTTGGGAACCAGCTTAACGGTGTCCGATTAATAAACGAAGGTCTTCGAGCTCGGTTTAAAGCATCATACCCTGAAATAGATGTCCAGCCACCATCACCAC
CAAGAGCCTCTGCAATGGAAACAGACAACGAACCAATGGCTATTGACTCAATCACAGCTTAGTTCAATTCCAAAAAAAACAAAGCCAAATGTCTCAGCTT
TGTTGGATTCATGTTGCTTTCGTTTTTGAAACATTTGTGGCATCATGATTTTGTAAATCTTTATGGAAAGTTAAAAGGAAACAACATTAACGAAATTTGA
AATTTTGCTTATTCGCTCCAGTACTTCTCATCATCAACATCTTTATCATGTTCCGACGAATCCTCACTGTCCGATTCATTGACCAAACCCATCTTGAATC
TCCTCACATCTTCAACAGCAGCATTCCTAAACAATCCAACATCAACAGCTCCGGCGACCATATGGTAACCACGTCCCCGAATCTCACCAGCTCCGTCGTG
CGGCATCGCGAAACCCGACAAGTAAGCCCCGCCTTT
| Start of BLAST Alignment: | NT 3099 / Exon 6 of 7 |
| First 15 bp Perfect Match: | NT 3099 / Exon 6 of 7 |
BLAST Details: Query Sequence: 41510_LB1 Length: (836 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g10760 68417.t01671 methyltransferase MT-A70, putative... 3149 4.1e-138 1 At4g10750 68417.t01670 HpcH/HpaI aldolase family protein ... 1785 5.1e-76 1 At4g08053 68417.t01237 CACTA-like transposase family (En/... 641 3.5e-23 1 At4g23270 68417.t03140 protein kinase family protein cont... 222 0.14 1 >At4g10760 68417.t01671 methyltransferase MT-A70, putative similar to (N6-adenosine)-methyltransferase [Mus musculus] GI:10179948, m6A methyltransferase (MT-A70) [Homo sapiens] GI:2460037; contains Pfam profile PF05063: MT-A70 (S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase)) Length = 3868 Plus Strand HSPs: Score = 3149 (478.5 bits), Expect = 4.1e-138, P = 4.1e-138 Identities = 633/641 (98%), Positives = 633/641 (98%), Strand = Plus / Plus Query: 196 GTATGCACAATGCTCATGCCGGGTAAAGTTTTTGACCTTTTAACTGTCATATGATATTGT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3139 GTATGCACAATGCTCATGCCGGGTAAAGTTTTTGACCTTTTAACTGTCATATGATATTGT 3198 Query: 256 TGTCATGAATCTTATGAGTCTACTGTTGGTTATAGATGGCTATCACTTGGGAACCAGCTT 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3199 TGTCATGAATCTTATGAGTCTACTGTTGGTTATAGATGGCTATCACTTGGGAACCAGCTT 3258 Query: 316 AACGGTGTCCGATTAATAAACGAAGGTCTTCGAGCTCGGTTTAAAGCATCATACCCTGAA 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3259 AACGGTGTCCGATTAATAAACGAAGGTCTTCGAGCTCGGTTTAAAGCATCATACCCTGAA 3318 Query: 376 ATAGATGTCCAGCCACCATCACCACCAAGAGCCTCTGCAATGGAAACAGACAACGAACCA 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3319 ATAGATGTCCAGCCACCATCACCACCAAGAGCCTCTGCAATGGAAACAGACAACGAACCA 3378 Query: 436 ATGGCTATTGACTCAATCACAGCTTAGTTCAATTCCNNNNNNNNCAAAGCCAAATGTCTC 495 |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3379 ATGGCTATTGACTCAATCACAGCTTAGTTCAATTCCAAAAAAAACAAAGCCAAATGTCTC 3438 Query: 496 AGCTTTGTTGGATTCATGTTGCTTTCGTTTTTGAAACATTTGTGGCATCATGATTTTGTA 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3439 AGCTTTGTTGGATTCATGTTGCTTTCGTTTTTGAAACATTTGTGGCATCATGATTTTGTA 3498 Query: 556 AATCTTTATGGAAAGTTAAAAGGAAACAACATTAACGAAATTTGAAATTTTGCTTATTCG 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3499 AATCTTTATGGAAAGTTAAAAGGAAACAACATTAACGAAATTTGAAATTTTGCTTATTCG 3558 Query: 616 CTCCAGTACTTCTCATCATCAACATCTTTATCATGTTCCGACGAATCCTCACTGTCCGAT 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3559 CTCCAGTACTTCTCATCATCAACATCTTTATCATGTTCCGACGAATCCTCACTGTCCGAT 3618 Query: 676 TCATTGACCAAACCCATCTTGAATCTCCTCACATCTTCAACAGCAGCATTCCTAAACAAT 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3619 TCATTGACCAAACCCATCTTGAATCTCCTCACATCTTCAACAGCAGCATTCCTAAACAAT 3678 Query: 736 CCAACATCAACAGCTCCGGCGACCATATGGTAACCACGTCCCCGAATCTCACCAGCTCCG 795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3679 CCAACATCAACAGCTCCGGCGACCATATGGTAACCACGTCCCCGAATCTCACCAGCTCCG 3738 Query: 796 TCGTGCGGCATCGCGAAACCCGACAAGTAAGCCCCGCCTTT 836 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3739 TCGTGCGGCATCGCGAAACCCGACAAGTAAGCCCCGCCTTT 3779 >At4g08053 68417.t01237 CACTA-like transposase family (En/Spm) has a 3.4e-89 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) [Daucus carota] Length = 4692 Minus Strand HSPs: Score = 641 (102.2 bits), Expect = 3.5e-23, P = 3.5e-23 Identities = 141/157 (89%), Positives = 141/157 (89%), Strand = Minus / Plus