At1g55900 SYNGENTA 42230
Genomic Sequence (from TAIR)
atgtagtcgaggtttaggcagaagaaaccctacaaatttaataaattttggttatttgttttctctttttgacacgaatgaatttattatttttgttgga aaaatattttcattttatttggtaaataaatagtgtaaaataacttcattaattagttattaaaagcccgaaatgcaaaaataaaataaaatagattctc ttcttggtaaacaagtaaaaaaaacagcaaaaaaaatagaaaaatatcggagtagaaataaaccgactaccaaacagtggataagagagttaaaacgagc ccataaaacctgtttccaaacagtccatctgttaattttccttttctccgatcaattccaaaaccctacttcaaccctgcgattcattcatcattcacag agtttgaagaaaacgccgaaatcggaaATGGCGTCTATTGTTCTTCGATCTCGCCTGTTGCCAAGATTAGCAAAGCTCAGATCTCGTAATCTGAGATGTT TCTCTGCGGAAGCATCTTCGACGAATTCTACATCTAGGTATTCGGGAGTCACCTCTACCCAGTCGATGTTTTCTGATTTTCCACCGCCAAATCAGCCGCC ACCTCCTCCTCCTCCTCAAGTGGAAGCTGCTGCCGCGGCTGCGACGGGAAAGGAGAGGAAAGGTCTTAAGTATCTTGGTTACGCACTCCTCTGGGCACTC ACTGGTGCTACCGCTGCTACTGGTTACGCAAGTTTTGgtatgtacttgcattcatgaattatcttttttccctctcgtagatttctagtacaaagttgtt tttgctgtgaaatgcgagtaaaaatgtgttatggtttgcttaatcgtggcattgcattacattttcacatatcagtcttttgaattcagtgttcttcact tggtagaactgtgtctttcttcgttatgttgactctttttagttctgattatacttgtttgtttcgttatgcagCTTACACGATAGATGAAGTGAATGAA AAGACTAAGGCGTTCCGAGAATCAGCTACGAAGACACCAGTTATTAAATCTTCTGGCATTGATGTGATTGATgtgagtaagcttggtagccttgagtcgc tgtcaaattaatgttgatcataacttgcttctgtattagttgactttctttagtctctggctttcaaatgcgtgctgccatgtttctctgcttcaaggta ttgtttataagcttctctgaattaataccctttatactcatctttctgcagAAATATCAGACTAAGTTGTACTCTGCTGCAATGACAGgtatagttcttg cgcctctgtcatcataactaatagtatgtctttaattaagcatagcatgagttggtttgcttgaattttgatcagGTTCTGCTAGAGCCATTGATAAGTA TTTAGAGCTTAGGGAAATTGTGGAGGAACAAGTGAAAgtacgtcctttcaccgagacacaacttttctttttcttgcatcttcttttttcttctagaatt cttattttttgtctggttccttatagGGCTTCACGGAACCTCTCTCGGAAAAGCTTCTTCCGGATCTGCACCCCGCAGAACAGCATGTCTTCACTCTAGT TCTTGATTTAAATGAGACACTGCTTTACACTGACTGGAAGgtaacatttcatttatttactgatcatcaaaatacttgcatcatagatgtgaatatgtga ctcagagtatctatgttatgaaacaaagcagttctggtgaactactttgttttcttaagtagtgctgtatttaacttttcctgccttttcatttacaaaa atgtctagCGGGAAAGAGGGTGGAGGACATTCAAAAGACCAGGTGTCGATGCATTCTTGGAGCATCTTGGGAAATTCTATGAGATTGTCGTGTATTCTGA CCAGATGGAGATGgtaaagtcccaattggtttttcttttttctccttttttgcttgtaatatcatagtaatgcgactactaacgcttgtttcattacttg tagTATGTACTCCCGGTCTGTGAGAAATTAGACCCAAATGGCTACATACGTTATAAGCTAGCAAGAGGCGCTACTAAATATGAAAATGGAAAGCACTATA GGgtacgtaagcagctagcttatcttgtcaaagcatactttctgacttgcccgagtaactgtttctcaactaactattaaaattcctgctgcagGATCTG TCAAAGCTGAACAGAGATCCGAAGAAGATTCTGTTTGTTAGCGCAAATGCCTTTGAATCAACCCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACA AACTAGAAGCTGATGACACAGCCCTAGTTGACCTGATACCCTTCCTTGAATgtaagtattggtgaactgagggataagttctgttccagtccgtgaactg cctgtatcaattttgtttggttgatcttcctgtttgggttatgcagATGTTGCACGTAACAGTCCAGCAGACATCAGACCGGTTCTGGCCTCTTTTGAGA GAAAAGATATTGCCAAAGAGTTCATTGACAGGTCCATAGAGTATCAAAAgtgagtcga◄tcagagcttttttttta◄ccctatcgtatcaatgcaaaatc tgttggtagtgtcccactaagagtgtcatatctctatgcagGCGAAAGCAAGGACAACTGGGACAAGGTCGATTCTGGAGGCGTTAAaggatctaagatt tatgtatagagcgagagacaattatatcatcattgatggt►gcacaccataaaataggaacatgagctaccgttcttcgctatggatttattaggtaaaa tccgaattaaaatactgtctttgtcatcaaagagtttttatgttacccaattttcctcgtctttctctctgctttacatagaaaatttctatgagaacga aaaagaaattatcatatggaaggttcatttttcgttgactaacaaataccgttttttttctctgatttatttttacttggtttgacaaatgatttatgat tatgaactttgagaaattattggttgaaacgtcaatttgtatgtattgctaaaaaaaagagtaaattaccttttctagtacgcttaatatttatctgtct gtt
Border_1 (42230_LB1_D)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTG
TCATAAAATAGGAACATGACAGGAACATATCATGTTCCTAATAAATCCACAATATTCGACTCACTTTTGATACTCTATGGACCTGTCAATGAACTCTTTG
GCAATATCTTTTCTCTCAAAAGAGGCCAGAACCGGTCTGATGTCTGCTGGACTGTTACGTGCAACATCTGCATAACCCAAACAGGAAGATCAACCAAACA
AAATTGATACAGGCAGTTCACGGACTGGAACAGAACTTATCCCTCAGTTCACCAATACTTACATTCAAGGAAGGGTATCAGGTCAACTAGGGCTGTGTCA
TCAGCTTCTAGTTTGTAAGGCTTGATTGGCACGCTATTTTCTGGCTGAAGGGTTGATTCAAAGGCATTTGCGCTAACAAACAGAATCTTCTTCGGATCTC
TGTTCAGCTTT
| Start of BLAST Alignment: | NT 2148 / Intron 9 of 9 |
| First 15 bp Perfect Match: | NT 2131 / Intron 9 of 9 |
BLAST Details: Query Sequence: 42230_LB1_D Length: (511 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g55900 68414.t05868 NLI interacting factor (NIF) famil... 1784 2.7e-76 1 >At1g55900 68414.t05868 NLI interacting factor (NIF) family protein contains Pfam profile PF03031: NLI interacting factor Length = 2661 Minus Strand HSPs: Score = 1784 (273.7 bits), Expect = 2.7e-76, P = 2.7e-76 Identities = 364/373 (97%), Positives = 364/373 (97%), Strand = Minus / Plus Query: 511 AAAGCTGAACAGAGATCCGAAGAAGATTCTGTTTGTTAGCGCAAATGCCTTTGAATCAAC 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1871 AAAGCTGAACAGAGATCCGAAGAAGATTCTGTTTGTTAGCGCAAATGCCTTTGAATCAAC 1930 Query: 451 CCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAAGCTGATGACACAGC 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1931 CCTTCAGCCAGAAAATAGCGTGCCAATCAAGCCTTACAAACTAGAAGCTGATGACACAGC 1990 Query: 391 CCTAGTTGACCTGATACCCTTCCTTGAATGTAAGTATTGGTGAACTGAGGGATAAGTTCT 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1991 CCTAGTTGACCTGATACCCTTCCTTGAATGTAAGTATTGGTGAACTGAGGGATAAGTTCT 2050 Query: 331 GTTCCAGTCCGTGAACTGCCTGTATCAATTTTGTTTGGTTGATCTTCCTGTTTGGGTTAT 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2051 GTTCCAGTCCGTGAACTGCCTGTATCAATTTTGTTTGGTTGATCTTCCTGTTTGGGTTAT 2110 Query: 271 GCAGATGTTGCACGTAACAGTCCAGCAGACATCAGACCGGTTCTGGCCTCTTTTGAGAGA 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2111 GCAGATGTTGCACGTAACAGTCCAGCAGACATCAGACCGGTTCTGGCCTCTTTTGAGAGA 2170 Query: 211 AAAGATATTGCCAAAGAGTTCATTGACAGGTCCATAGAGTATCAAAAGTGAGTCGAATAT 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2171 AAAGATATTGCCAAAGAGTTCATTGACAGGTCCATAGAGTATCAAAAGTGAGTCGATCAG 2230 Query: 151 TGTGGATTTATTA 139 | ||| ||| Sbjct: 2231 AGCTTTTTTTTTA 2243
Border_2 (42230_AbB_U)
AGTGATCAGATCCGCACACCATAAAATAGGAACATGAGCTACCGTTCTTCGCTATGGATTTATTAGGTAAAATCCGAATTAAAATACTGTCTTTGTCATC
AAAGAGTTTTTATGTTACCCAATTTTCCTCGTCTTTCTCTCTGCTTTACATAGAAAATTTCTATGAGAACGAAAAAGAAATTATCATATGGAAGGTTCAT
TTTTCGTTGACTAACAAATACCGTTTTTTTTCTCTGATTTATTTTTACTTGGTTTGACAAATGATTTATGATTATGAACTTTGAGAAATTATTGGTTGAA
ACGTCAATTTGTATGTATTGCTAAAAAAAAGAGTAAATTACCTTTTCTAGTACGCTTAATATTTATCTGTCTGTTTCAATGCGTGTCTTAAGGTGCAATA
TCAGGTTTACAATTAGGTAAATCAATTACAGATTTTTCTTGTTAATCTGAACCAAATAATTGTACTTTTTCCTAAATTTGAATTCATAAA
| Start of BLAST Alignment: | NT > 53 / 3’ UTR |
| First 15 bp Perfect Match: | NT > 53 / 3’ UTR |
BLAST Details: Query Sequence: 42230_AbB_U Length: (490 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g55900 68414.t05868 NLI interacting factor (NIF) famil... 1219 7.3e-50 1 At1g79420 68414.t08464 expressed protein contains Pfam pr... 224 0.022 1 At2g16385 68415.t01780 expressed protein Requires functio... 191 0.59 1 At2g16990 68415.t01858 expressed protein 189 0.80 1 >At1g55900 68414.t05868 NLI interacting factor (NIF) family protein contains Pfam profile PF03031: NLI interacting factor Length = 2661 Plus Strand HSPs: Score = 1219 (188.9 bits), Expect = 7.3e-50, P = 7.3e-50 Identities = 247/255 (96%), Positives = 247/255 (96%), Strand = Plus / Plus Query: 14 GCACACCATAAAATAGGAACATGAGCTACCGTTCTTCGCTATGGATTTATTAGGTAAAAT 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2407 GCACACCATAAAATAGGAACATGAGCTACCGTTCTTCGCTATGGATTTATTAGGTAAAAT 2466 Query: 74 CCGAATTAAAATACTGTCTTTGTCATCAAAGAGTTTTTATGTTACCCAATTTTCCTCGTC 133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2467 CCGAATTAAAATACTGTCTTTGTCATCAAAGAGTTTTTATGTTACCCAATTTTCCTCGTC 2526 Query: 134 TTTCTCTCTGCTTTACATAGAAAATTTCTATGAGAACGAAAAAGAAATTATCATATGGAA 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2527 TTTCTCTCTGCTTTACATAGAAAATTTCTATGAGAACGAAAAAGAAATTATCATATGGAA 2586 Query: 194 GGTTCATTTTTCGTTGACTAACAAATACCGNNNNNNNNCTCTGATTTATTTTTACTTGGT 253 |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2587 GGTTCATTTTTCGTTGACTAACAAATACCGTTTTTTTTCTCTGATTTATTTTTACTTGGT 2646 Query: 254 TTGACAAATGATTTA 268 ||||||||||||||| Sbjct: 2647 TTGACAAATGATTTA 2661 >At1g79420 68414.t08464 expressed protein contains Pfam profile PF04788: Protein of unknown function (DUF620) Length = 2858 Plus Strand HSPs: Score = 224 (39.7 bits), Expect = 0.023, P = 0.022 Identities = 212/378 (56%), Positives = 212/378 (56%), Strand = Plus / Plus