At5g22640 SYNGENTA 42387
Genomic Sequence (from TAIR)
aaatattatttataaaaaataataattggttggtgatcaattggatccagtataaagctgaagcctgaaagtagacttttgtaacgcaattactaaatat caaacattgtatgcattggtttcttgaaacggcccatgttcttcaaagtatttgatgttcggcccatataagatttgaaaggtatgggccaatgataatt cagataatctacaagacgcatttttaagccttcttaaacttacggggcaaaaataagaaaaaccaaaacaacaggggcgaaatacaaattatctgcaaat gtttttgtttcttctcagtgtctctagtttacacaaaaaccccaaaacctctctcacaacgcttatctgctcaacaacactcttcacctatccacttctc atctcttcgttatcccctctctctaATGGCTAACGAAGAACTCACTGAGTCACAGCAACAAGAAGACCCAAGTCAACAATTACCCAATGCAGATGAAGAA AAGGGCTCAGACTCCGACTCAAACTCAGACTCAGACGCATCATCCCAATCCTCCGGCGACGATTTCTACATCTCCGAGTCAGAAAATGAAGCAGAAGGAG ACAACACAATCTTCAACTACGTAAGACCAAGTGACATACCTCCTGACCCAAACGCAAACCCAGAAACCAACATTCGCCGATTCAATCGAGTCCTCGATGG CAAACGAGTGAAGCGTATGCAAGAAGAAGAAGAAGATAAATACACTTTCTATGAAGATCTTTTCGATTTCCCTAGAGACCCAGAACGTTGGAAGGAGCAA GATTTAAGAGAGATTTGGGCTGATGGTCCATTGGAGATGACGAAACCTGGTTGGGATCCTGCTTGGGCTGATGAAGATGATTGGGATGTTGTTAACGATG AGATTCAAGAAGGTCGAGATCCTGGGATTCAACCTTTTTATGTTCCGTATAGGAAACCTTATCCAGCTATTCCAGATAATCATTATGATATTGAGAATGC TAAAGGTGTTGTTGAAGAGCTTGATAGGATTGAAGAGTTTCTTCAGTGGGTCAGCTATATTTTTCCTGATGGAAGCTCgtaatgcctcacatttcccttt tttcttctctttggttttggtgtcttgtttctgtgagtttggtgtttgcaagttgtgatttttaggttttgggtttacaggctttggtgttttgttaccg tgagatgctttctaaatctagtgattttcttagtttgttgtgttctataagctgcagattgaattttccatgaagtttgggttgaaactttgtattctaa atagagtttgaattatggaaatgaaggaaatggcaatgcaggttggatgatagggcattagaaactttcttgtgactaagttttatgatcttcgtcatct gtttgggttgcttagtgatgaatactttcgtctagattcagtagcttcgtatctcactattttctctctcttttgttttgggctaaagGTACGAAGGCAC AGTTTGGGATGACTTGGCTCAAGGCAAAGGTGTTTATATTGCTGAAAATGGGCTTGTGAGgtgatatttctgttttggagatttgcttgttttttgtttc tcttggtaatgtcttacaattggttttcaatcacccaataatttttttggtgttggctctgaatttgaattgttagGTATGAGGGTGAATGGCTTCAGAA TGACATGGAAGGTCATGGGGTTATCGACGTTGATATTCCTGACATTGAGCCCATACCAGGTTCCAAgtatgattctcattcctattaatcttcccacggg attttatgaacatagtcgtttgactaggatattgttctttctgtctatgtagGCTTGAAGCTAAGATGCGTGCGGAAGGAAGGATTATCAAGAGAGATTA CATGACTCCAGAAGACAGAAAGTGGTTGGAAATGGATGTCGAGGATAGTGTTGCACTTACTGATGGGAATTTTCAAGTTCCTTTCTATGAAAACGAAGAA TGGGTCACACAGTTTGGCGAGAAACCgtgagtctgcgatgataagattcttactagatggcttacttcccaacactaatttgaacggttttatttaatat tttgatttactgacctcatgaaatatattgctggactaggcaataacttgatctaaaaatacaaacagaaaaatgtctttttagttgatttcctctctat tccttattcatacatatacattgtatattatatggttttcatatcagGGAGAAAGGTCGGTATCGCTATGCTGGTCAATGGAAGCACAGTCGAATGCATG GGTGTGGTGTCTATGAAGTTAACGAACGCATCC◄TATATgtgagtagtaag►aaatattggtcgtttacatcataattctatctaatctgatcatcataa aatagcttagatagatggcatctttgtacttcatgaaagatttacattagtgaatattcatgtttctgacactagttcacatcttaatggtaacgcagGG TAGATTCTACTTTGGGGAGCTATTGGAGGAGGAGCATGGCTGTACCGTAGATATTTGTGCGgtagttacccatttttgctctctatgatacatataactt tcagcaaagaaagaggaagtcgtgataaatatactgatgtgaaaacatttttcagCTGCATTCTGGTTTGGCGGAGGTGGCTGCAGCTAAGGCTCGAATG TTTGTAAACAAACCCGACGGAAgtattgccccttttctttaccacttcttctgtttggttctgtgtattaagtataaaccaagacatattttagggattt gtttgattcctttagatcagtgcaggaccctctctagtaaccatcattctgtttcaaatatatatttcgcttttctttcaggcaatgtccagcttatgaa agtgaggaagaaaactggtcactttacagtaaggtgttagtttagttgagagctcaaagtgtttttgttttgtttgttttatgtctatgcagTGATTAGG GAAGAGAGGGGACCATATGGTGATCCTCAACATCCGTATTTTTATGAAGAAGATGATGTGTGGATGGCGCCTGGTTTTATTAACCAATTTTATGAAgtgg gtcattttcttatcaagcttttcgagttagttttctgatcacaaagttgacaaaacaatctgtctttttggtagGTACCTGAGTATTGGGAAACCTACGT AGGCGAGGTGGATCAAGAGAGGGAAATGTGGTTGAACTCTTTTTACAAAGCTCCTTTGAGGTTACCAATGCCTGCTGAGCTCGAACATTGGTGGGAAAAT GgtaatgacccttcaagattttagtcttacatggttgaatgcattgatgttctactgatttttttctatattttattttcttgatcagTGGAGGTGACAC CGGAGTTTGTTTTACTGAACAAAGAACCTGAACCTGATCCAAATGATCCTTCAAAACTTGTCCAGAAGGAGGACCCTGTTATTTTACATACACCAACAGG TCGAATAATCAACTATGTAGAGGATGAAAAGCATGGCATTCGACTATTTTGGCAGCCTCCTCTGGAGGAAGGAGAAGAAGTGGATCCTTCAAAAGTTGAG TTTCTGCCACTTGGGTTCGACGAGTTCTATGGGAAAGAAGTGGTAGTGAAAAAGGAACACCCAATAAAAAGCTTTGTACTTGGAATCGAGAAATCGGTGA AGCCGATGCTTGACGGATTAGAGAAATGGACAGAAGAGAAAAAGAAAGCATATGAGGAGAGAAAGGAGATGATACAGCAAGAACTTGAGTTAGTAGAGGC TGAGATTTGCTTAGAGGAAGCTATAGAAGATATGGATGAAGAATTGAAGAAGAAAGAACAAGAAGAGGAAAAGAAAACTGAAATGGGTTTAACTGAAGAG GATGAAGATGTTTTGGTCCCGGTTTATAAAGAAGAGAAAGTTGTCACTGCCAAAGAGAAGATACAAGAGAATAAACAAGAAGAGAAATACAAAGATGATG ATGATGAGGATGATGACGATGGTGATGATGATGACGATGATGATGATGATGATGATCTTGGGCCATCAAGTTTTGGATCTGCAGACAAGGGAAGGAGGAA TTCTCCTTTTTCTTCATCCTCATTGTCTTTTGCTTCGTGTACCCTCTTTCCTGCGgtaatactctctcttatttttcagtataatctcggtttgtctcga ttagaagaagttagtgttgatatatgtaaacttggcagGTACAATCAAGACTAGAAAGCTCATTTCTAGCATGGAAGCAACATCGAGCAGAACCATCAAA AGTGAACACAGGAATCATCAAAGGTGCTGATACCGCATCAGCTTCAATCCATTTTCCTCCATTGTCGAGTAACAATGCTAGATTGAAGATGGGAAAGGTA GCAAACCGAGGTTGTGTCCAGAGAAGCTATGGAAGCTCAAGATCTCAGTCTCAGTTAATGTCTCTATCACGACTACTTTCTTGCAACGCATCATCATCTT CTTCTCCTCCCGATAGCAGCTCCAGTGAATACCTCAAAGACTCCGGCCTCTGGGAAACACCGGTTGGGGACATGAGCGTGGTTTTGTCGCTGCAAATTCA GACAAAATGTTCTGATTTGTTTGCTGAGACTCCTGCTGTGTCTTGAgtctctcttcttctgtagcatttagctcgagttcttatgcacttcaaggcttct ttttttggtggacaagatcatttgaatttttgttgtattatctaataaatattttaccgaaactatttaaacgaaaaaactgaagatttatttctgtttt atttttcataatcatatgatttagagaatgagaatcgaataatctcagaatatttaagttaatatttcatttatcaatttagaatctttaccaaatatgc aaataattttacattaacgcaaatattccaaaataaaggaagcgttacgaaattaagggcaaaacgacgccgtgtagactctcgaagaaccctaaagaga cttcttaaacctcattcgattataaaatagccccaaacccactgcctctttcactgcaatttctctctttcgcttctaaaaaaaaacctaacaacctctc tt
Border_1 (42387_RBD)
TGA:TACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAAC
TATCAGTGTTTCCCGCCTTCAGTTTAGACAAATTGTGCTAGACAACTTGACCACACCGATAACTTATATTGTCGCAATGTGTTTTTAAGTTGTCTGGATG
CGTTCGTTAACTTCATAGACACCACACCCATGCATTCGACTGTGCTTCCATTGACCAGCATAGCGATACCGACCTTTCTCCCTGATATGAAAACCATATA
ATATACAATGTATATGTATGAATAAGGAATAGAGAGGAAATCAACTAAAAAGACATTTTTCTGTTTGTATTTTTAGATCAAGTTATTGCCTAGTCCAGCA
ATATATTTCATGAGGTCAGTAAATCAAAATATTAAATAAAACCGTTCAAATTAGTGTTGGGAAGTAAGCCATCTAGTAAGAATCTTATCATCGCAGACTC
ACGGTTTCTCGCCAAACTGTGTGACCCATTCTTCGTTTTCATAGAAAGGAACTTGAAAATTCCCATCAGTAAGTGCAACACTATCCTCGACATCCATTTC
CAACCACTTTCTGTCTTCTGGAGTCATGTAATCTCTTTTGATAATCCTTCCTTCCGCACGCATCTTAGCTTCAAGCCTACATA
| Start of BLAST Alignment: | NT 1908 / Exon 5 of 11 |
| First 15 bp Perfect Match: | NT 1908 / Exon 5 of 11 |
BLAST Details: Query Sequence: 42387_RBD Length: (682 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g22640 68418.t02400 MORN (Membrane Occupation and Reco... 2431 3.0e-105 1 At2g15260 68415.t01652 zinc finger (C3HC4-type RING finge... 197 0.80 1 At1g61230 68414.t06319 pseudogene, jacalin lectin family ... 189 0.98 1 At5g43065 68418.t04897 non-LTR retrotransposon family (LI... 186 0.995 1 >At5g22640 68418.t02400 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat Length = 4417 Minus Strand HSPs: Score = 2431 (370.8 bits), Expect = 3.0e-105, P = 3.0e-105 Identities = 487/488 (99%), Positives = 487/488 (99%), Strand = Minus / Plus Query: 682 TATGTAGGCTTGAAGCTAAGATGCGTGCGGAAGGAAGGATTATCAAAAGAGATTACATGA 623 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1476 TATGTAGGCTTGAAGCTAAGATGCGTGCGGAAGGAAGGATTATCAAGAGAGATTACATGA 1535 Query: 622 CTCCAGAAGACAGAAAGTGGTTGGAAATGGATGTCGAGGATAGTGTTGCACTTACTGATG 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1536 CTCCAGAAGACAGAAAGTGGTTGGAAATGGATGTCGAGGATAGTGTTGCACTTACTGATG 1595 Query: 562 GGAATTTTCAAGTTCCTTTCTATGAAAACGAAGAATGGGTCACACAGTTTGGCGAGAAAC 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1596 GGAATTTTCAAGTTCCTTTCTATGAAAACGAAGAATGGGTCACACAGTTTGGCGAGAAAC 1655 Query: 502 CGTGAGTCTGCGATGATAAGATTCTTACTAGATGGCTTACTTCCCAACACTAATTTGAAC 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1656 CGTGAGTCTGCGATGATAAGATTCTTACTAGATGGCTTACTTCCCAACACTAATTTGAAC 1715 Query: 442 GGTTTTATTTAATATTTTGATTTACTGACCTCATGAAATATATTGCTGGACTAGGCAATA 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1716 GGTTTTATTTAATATTTTGATTTACTGACCTCATGAAATATATTGCTGGACTAGGCAATA 1775 Query: 382 ACTTGATCTAAAAATACAAACAGAAAAATGTCTTTTTAGTTGATTTCCTCTCTATTCCTT 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1776 ACTTGATCTAAAAATACAAACAGAAAAATGTCTTTTTAGTTGATTTCCTCTCTATTCCTT 1835 Query: 322 ATTCATACATATACATTGTATATTATATGGTTTTCATATCAGGGAGAAAGGTCGGTATCG 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1836 ATTCATACATATACATTGTATATTATATGGTTTTCATATCAGGGAGAAAGGTCGGTATCG 1895 Query: 262 CTATGCTGGTCAATGGAAGCACAGTCGAATGCATGGGTGTGGTGTCTATGAAGTTAACGA 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1896 CTATGCTGGTCAATGGAAGCACAGTCGAATGCATGGGTGTGGTGTCTATGAAGTTAACGA 1955 Query: 202 ACGCATCC 195 |||||||| Sbjct: 1956 ACGCATCC 1963 >At2g15260 68415.t01652 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) Length = 3481 Minus Strand HSPs: Score = 197 (35.6 bits), Expect = 1.6, P = 0.80 Identities = 149/250 (59%), Positives = 149/250 (59%), Strand = Minus / Plus
Border_2 (42387_LBU)
CGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTAAATATTGGTCGTTTACATCATAATTCTATCT
AATCTGATCATCATAAAATAGCTTAGATAGATGGCATCTTTGTACTTCATGAAAGATTTACATTAGTGAATATTCATGTTTCTGACACTAGTTCACATCT
TAATGGTAACGCAGGGTAGATTCTACTTTGGGGAGCTATTGGAGGAGGAGCATGGCTGTACCGTAGATATTTGTGCGGTAGTTACCCATTTTTGCTCTCT
ATGATACATATAACTTTCAGCAAAGAAAGAGGAAGTCGTGATAAATATACTGATGTGAAAACATTTTTCAGCTGCATTCTGGTTTGGCGGAGGTGGCTGC
AGCTAAGGCTCGAATGTTTGTAAACAAACCCGACGGAAGTATTGCCCCTTTTCTTTACCACTTCTTCTGTTTGGTTCTGTGTATTAAGTATAAACCAAGA
CATATTTTAGGGATTTGTTTGATTCCTTTAGATCAGTGCAGGACCCTCTCTAGTAACCATCATTCTGTTTCAAATATATATTTCGCTTTTCTTTCAGGCA
ATGTCCAGCTTATGAAAG
| Start of BLAST Alignment: | NT 1925 / Intron 5 of 10 |
| First 15 bp Perfect Match: | NT 1925 / Intron 5 of 10 |
BLAST Details: Query Sequence: 42387_LBU Length: (618 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g22640 68418.t02400 MORN (Membrane Occupation and Reco... 2750 3.8e-120 1 At4g06676 68417.t01012 expressed protein ; expression sup... 187 0.98 1 >At5g22640 68418.t02400 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat Length = 4417 Plus Strand HSPs: Score = 2750 (418.7 bits), Expect = 3.8e-120, P = 3.8e-120 Identities = 550/550 (100%), Positives = 550/550 (100%), Strand = Plus / Plus Query: 69 AAATATTGGTCGTTTACATCATAATTCTATCTAATCTGATCATCATAAAATAGCTTAGAT 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1981 AAATATTGGTCGTTTACATCATAATTCTATCTAATCTGATCATCATAAAATAGCTTAGAT 2040 Query: 129 AGATGGCATCTTTGTACTTCATGAAAGATTTACATTAGTGAATATTCATGTTTCTGACAC 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2041 AGATGGCATCTTTGTACTTCATGAAAGATTTACATTAGTGAATATTCATGTTTCTGACAC 2100 Query: 189 TAGTTCACATCTTAATGGTAACGCAGGGTAGATTCTACTTTGGGGAGCTATTGGAGGAGG 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2101 TAGTTCACATCTTAATGGTAACGCAGGGTAGATTCTACTTTGGGGAGCTATTGGAGGAGG 2160 Query: 249 AGCATGGCTGTACCGTAGATATTTGTGCGGTAGTTACCCATTTTTGCTCTCTATGATACA 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2161 AGCATGGCTGTACCGTAGATATTTGTGCGGTAGTTACCCATTTTTGCTCTCTATGATACA 2220 Query: 309 TATAACTTTCAGCAAAGAAAGAGGAAGTCGTGATAAATATACTGATGTGAAAACATTTTT 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2221 TATAACTTTCAGCAAAGAAAGAGGAAGTCGTGATAAATATACTGATGTGAAAACATTTTT 2280 Query: 369 CAGCTGCATTCTGGTTTGGCGGAGGTGGCTGCAGCTAAGGCTCGAATGTTTGTAAACAAA 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2281 CAGCTGCATTCTGGTTTGGCGGAGGTGGCTGCAGCTAAGGCTCGAATGTTTGTAAACAAA 2340 Query: 429 CCCGACGGAAGTATTGCCCCTTTTCTTTACCACTTCTTCTGTTTGGTTCTGTGTATTAAG 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2341 CCCGACGGAAGTATTGCCCCTTTTCTTTACCACTTCTTCTGTTTGGTTCTGTGTATTAAG 2400 Query: 489 TATAAACCAAGACATATTTTAGGGATTTGTTTGATTCCTTTAGATCAGTGCAGGACCCTC 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2401 TATAAACCAAGACATATTTTAGGGATTTGTTTGATTCCTTTAGATCAGTGCAGGACCCTC 2460 Query: 549 TCTAGTAACCATCATTCTGTTTCAAATATATATTTCGCTTTTCTTTCAGGCAATGTCCAG 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2461 TCTAGTAACCATCATTCTGTTTCAAATATATATTTCGCTTTTCTTTCAGGCAATGTCCAG 2520 Query: 609 CTTATGAAAG 618 |||||||||| Sbjct: 2521 CTTATGAAAG 2530 >At4g06676 68417.t01012 expressed protein ; expression supported by MPSS Length = 2842 Plus Strand HSPs: Score = 187 (34.1 bits), Expect = 3.8, P = 0.98 Identities = 95/149 (63%), Positives = 95/149 (63%), Strand = Plus / Plus