At3g18390 SYNGENTA 42644
Genomic Sequence (from TAIR)
cggtgacccaacgacaacgaaaccggttttactcagacccgactccgtcgcttatataacttttcacctgtgtaatttttttaaacttaacatgtagtaa tgggcttttaaaacccattaaaggcccattttcctaaaaccgatacaaaaatcttatccgtatggtcgagtaaatccagcttatccgcctgaaacttatt tctcagtatccaaaacgatggcgaagaagacacttcgctgaagcttttttttccaaaaaaatttcttagtgtcgtcaATGGCTTTGGCTCCACTTAATTT TACGGAAATGCCACTGAGAAGCTCTCTTCCTCTGACCTCTAGCTCTCGCTATTGTTCCTCTCCTTCGCTTCACGCATTGCTCTTCTATTCGTTGGGTGTG AAACCCTCGCGTCAACAAATTGTTCGGCCATTCTCTTCGCTGCGTACAAGCGAGCGTAGCAACAACAGGAGCAATAACAATCGTCGATTAGATCAACGTA ATCATAAACCTACTCCTCCTTGGATAGATAAGTGGCCTCCGTCATCCTCCGGAGCTGGCGGTGATCATGCCGGGAAGAAAGGTGGTGAAAACAACGGCGG AGATAGAATTCGGTCTGCGGAGGAGGAAGCGGAAGCGAAACTTCGGTATTTGGAGAAGGATAAAGGACAAAACGCGATTGAGAGGATTGTTCTTCGGCTA CGGAATTTAGGATTAGGTTCGGATGATGAGGACGATGTGGAAGATGACGAGGGAGGTGGAATTAACGGCGGAGATGTGAAGCCGGTGACTGGAGAAGAGA GATTGGGGGATTTGTTGAAGAGAGAGTGGGTGAGACCTGATATGATGCTTGCTGAGGGAGAAGAGAGTGAGGAAGAGGATGAGGTATTATTGCCATGGGA GAAAAATGAGGAAGAGCAGGCGGCGGAGAGAGTAGTAGGAGAAGGAGGAGTGGCGGTGATGCAGAAGAGGAGAGCTAGAGCTCCATCACTGGCGGAGCTC ACCGTTGAGGATTCTGAGTTACGGCGGTTAAGGAGGGATGGAATGTATCTGAGGGTTAGGATCAATATACCAAAAGCTGGGCTAACGCAGGCAGTGATGG AGAAGATTTATGATACTTGGAGGAAAGAAGAGCTTGTGAGGCTAAAGTTCCACGAAGTGCTTGCTCGTGACATGAAGACGGCCCATGAGATTGTTGAGgt tcgttagttctcttgaatacttcattgattagaacagtaggttagcgaaatttgaggtgcgagattattccaagagagagcggttttcattatctattgg ggataagctttgcggaagtgacatgatctttataggatagtaagagactctgaagtacctaagctctgaaatagaatggttataaagcttttataataac agtaggaaatttgtgaaaaacgttagatctttcttgggaacgattatatagttgtgaataaggtgaatttgaggtgttgattaactagagtggatggagc tgagcatgctgttagaattctttgagtaacaagactgtgcaggagatgcatgtcttaactttaggtttaaaaaaaaactgattgaattactctaatgggc agCGTCGAACTGGTGGAATGGTGATATGGAGGGCCGGAAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCTCTAATCAAAT GGCCGGTCCTAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCGATGAAGCAACAAATGCCAAAGATAACCAAA◄GTGCACCTTTGGTAATCAA AGATCCG►ATCATCAA►GAACCCTATTCGCAAAGAGAATATGACAGAAGAAGAAGTTGAATTTAA◄CAGTCTATTAGACAGCTTAGGTCCACGTTTTCAA GAGTGGTGGGGTACTGGGGTACTACCTGTGGACGCTGACTTACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGGCTTCTTCCTACTGGGATGA GATCAAATTTGACCAATGCCGAAATGACAAATCTCAGGAAGATTGGTAAAACTCTCCCATGCCATTTTGCTCTTGgtaagctgctttctgatcctagatg attttttcccgatggctcttatattttgtgtgccgatgtttaggcttgaatctgcactttacagGTAGGAACAGAAATCACCAAGGATTGGCAGCTGCAA TACTCCAGATCTGGGAGAAAAGTCTAATTGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAACAAACTAATGGCGGATGAAGTGAAGgtctc tcttatctttttttctctaaagttcactgttagggaaaagtaatttctaagacagcccacaaattgatggtgcatagcagaaaagtttctgtcatttcct gagttctatattatggatgatgtttaggaaaatgtacatatttaaatctaatgattcatgttgggatttctagaagttagggagaccttacagctggtgg ttatatcgagatctagaaatttcaagaagggttttgtttacctgctctcataatgtcatctctattctatactgggtaggcattgagcgttggtgttaat atccaaactaaatgaagtaaggaaactataagaaacatagggcccttgcatttgaaccatagtatgacctttattatctctggcaagctcttgaggatct gagtggccatcgcttatataacagaaatattttcacataggaaggctaagttcttttatttatctgtcttgttgctatagACATTGACAGGGGGTGTCTT GCTGCTCAGAAATAAGTATTACATTGTAATATATCGTGGGAAGGACTTCCTTCCTTCAAGTGTGGCAGCTACTTTAGCAGAAAGACAAGAATTAACGAAA GAGATTCAAGATGTCGAAGAGAGGGTAAGAAATCGTGAGATTGAGGCTGTTCAGCCTGTTGGTGACAAAGTACCAGCAGAAGCTGGCACTCTGGCCGAGT TTTATGAGGCTCAAGCCCGATGGGGGAAGGAAATAACTCCAGACCATCGTGAAAAGATGATTGAAGAAGCTTCAAGGGTTGCAAATGCTAGAGTTGTTAA ACGAATACAACACAAACTAAACCTTgtaagtagacctttttgtttttagtttgttaatttgcaacttgaaggttactgtgagatgtctggtggcaactgt cttagtacgtcgttatgagtattataacttctcccttgggttgtaacagGCCCAATCGAAGTTTCAAAGAGCAGAGAAACTGTTGTCCAAAATAGAAGCC TCTATGATTCCAAATGGACCTGATTATGATCAAGAGGTCATCTCCGAGGAAGAAAGAGCTATGTTCCGGAAAGTGGGACTGAAAATGAAGGCATACTTAC CCATAGgtgcgtcctggtctcttaagcattgtggctgtttcctgtatggctgtctacagtgattgataggttgtgatagaacgtaacagatgtcttctta tcatatgaataaactgttctttgatgttgaccaccctacagGTATCCGTGGTGTATTTGATGGAGTCATTGAGAACATGCATCTGCATTGGAAACACAGA GAATTGGTGAAGCTTATATCAAAACAGAAGAACCAAGCATTTGTTGAGGAGACAGCCCGGTTACTAGAATACGAGAGTGGTGGAGTTCTTGTGGCAATAG AAAAGGTTCCTAAAGGATTTGCGCTTATTTATTACCGTGGGAAGAATTACAGGAGACCCATTAGCTTGAGACCAAGGAATCTTCTGACAAAAGCAAAAGC ATTGAAACGTTCCATTGCAATGCAACGCCACGAGgttcgaaattcctgaagtattctacacaaatcacatttatattcacatgatgatcacagggttctt ttatgacacttcttttgagaataattgcagGCACTTAGTCAGCATATTTCTGAACTGGAGAGAACAATAGAGCAAATGCAAAGCCAACTCgtaagttgtc ttttcctcaactggggatgctaatagtccaagaaaattaatctttttgacactgttaagctctatttgcttttgtaaagcatgcgtattttgctgtgact cactacctggtggttttttgcagACTTCGAAAAACCCGTCATACAGTGAATCAGAATGGGAGAACGATGAGGATGATGATGATGATGAAGAAGAAGAGAA AGATGATGTGGAGGATAATGAGAGTGATTGGGATGAAACTGATGGCGAATCTGCAATTTCTAGTATCGAAGAAGCTGATATGTCATCGCGCTAAgctgat aaagtttttaacacagagattgtcctatctcaggaggttgaagctgacaatgatgtcagaggaatggttctggttctggttctgtctatccagtggtggt aaaagaaaagcaagtgatgattcatcatcaacgtgggtaaggtttaagtttcctgtcgcagagattacagaatctacgagctcagaaagcagaacctatc tgtatttcaggggagaaaaaaataagcatctatagtttatatacattgtaagttttgccaatgtatcattattaaaaaatatatatatatcaattaacat tcaacaaattgtaaattagttctactacctttgcttaagttctggcagcaattgtgatctgaaattctgaacaactagtaaattctggtgaacattagtt taccaatgcatattactttgttcggtctagcgattacatgatcctacgattattcgcatttaaaagattggctaaaatccaaaatatgaagttgtgatgc agtgacatgaaaaacacgagtgtgaagttggcatgcgacatatttatagccctaactgtgactacaaagtttcaaatcgactaatcaagaactttattga ttaatgagagctgatgatatttattaaattgggctcatttgctctgctcttaatttaattttctttctgtttagcacaaatatgtacatgtgaaaattta actttgtgatgtgatgaggatattttctttactatttttagatttatcattctttttcggtttttcctaagtaatatttttttttttcccgtcgaagtaa taat
Border_1 (42644_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCAATTTGGTTATCTTT
GGCATTTGTTGCTTCATCGCCAGCAGAAGATACATCTGGGACAAAAAGAGTCTCTTTAGGACCGGCCATTTGATTAGAGATCACAGGAGGTCCTTTATAG
TCAAGTCCACGATAAACCACCATTACACTTCCGGCCCTCCATATCACCATTCCACCAGTTCGACGCTGCCCATTAGAGTAATTCAATCAGTTTTTTTTTA
AACCTAAAGTTAAGACATGCATCTCCTGCACAGTCTTGTTACTCAAAGAATTCTAACAGCATGCTCAGCTCCATCCACTCTAGTTAATCAACACCTCAAA
TTCACCTTATTCACAACTATATAATCGTTCCCAAGAAAGATCTAACGTTTTTCACAAATTTCCTACTGTTATTATAAAAGCTTTATAACCATTCTATTTC
AGAGCTTAGGTACTTCAGAGTCTCTTACTATCCTATAAAGATCATGTCACTTCCGCAAAGCTTATCCCCAATAGATAATGAAAACCGCTCTCTCTTGGAA
TAATCTCGCACCTCAAATTTCGCTAACCTACTGTTCTAATCAATGAAGTATTCAAGAGAACTAACGAACCTCAACAATCTCATGGGCCGTCTTCATGTCA
CGAGCAAGCACTTCGTGGAACTTTAGCCTCACAAGCTCTTCTTTCCTCCAAGTATCATAAATCTTCTCCATCACTGCCTGCGTTAGCCCAGCTTTTGGTA
TATTGATCCTAACCCTCAGATACATTCCATCCCTCCTTAACCGCCGTAACTCAGAATCCTCAACGGTGAGCTCCGCCAGTGATGGAGCTCTAGCTCTCCT
CTTCTGCATCACCGCCACTCCTCCTTCTCCTACTACTCTCTCCGCCGCCTGCTCTTCCTCATTTTTCTCCCATGGCAATAATACCTCATCCTCTTCCTCA
CTCTCTTCTCCCTCAGCAAGCATCATATCAGGTCTCACCCACTCTCTCTTCAACAAATCCCCCAATCTCTCTTCTCCAGTCACCGGCTTCACATCTCCGC
CGTTAATTCCACCTCCCTCGTCATCTTCCACATCGTCCTCATCATCCGAACCTAATCCTAAATTCCGTAGCCGAAGAACAATCCTCTCAATCGCGTTTTG
TCCTTTATCCTTCTCCAAATACCGAAGTTTCGCTTCCGCTTCCTCCTCCGCAGACCGAATTCTATCTCCGCCGTTGTTTTCACCACCTTTCTTCCCGGCA
TGATCACCGCCAGCTCCGGAGGATGACGGAGGCCACTTATCTATCCAAGGAGGAGTAGGTTTATGATTACGTTGATCTAATCGACGATTGTTATTGCTCC
TGTTGTTGCTACGCTCGCTTGTACGCAGCGAAGAGAATGGCCGAACAATTTGTTGACGCGAGGGTTTCACACCCAACGAATAGAAGAGCAATGCGTGAAG
CGAAGGAGAGGAACAATAGCGAGAGCTAGAGGTCAGAGGAAGAGAGCTTCTCAGTGGCATTTCCGTAAAATTAAGTGGAGCCAAAGCCATTGACGACACT
AAGAAATTTTTTTGGAAAAAAAAGCTTCAGCGAAGTGTCTTCTTCGCCATCGTTTTGGATACTGAGAAATAAGTTTCAGGCGGATAAGCTGGATTTACTC
GACCATACGGATAAGATTTTTGTATCGGTTTTAGGAAAATGGGCCTTTAATGGGTTTTAAAAGCCCATTACTACATGTTAAGTTTAAAAAAATTACACAG
GTGAAAAGTTATATAAGCGACGGAGTCGGGTCTGAGTAAAACCGGTTTCGTTGTCGTTGGGTCACCG
| Start of BLAST Alignment: | NT 1585 / Exon 2 of 8 |
| First 15 bp Perfect Match: | NT 1503 / Exon 2 of 8 |
BLAST Details: Query Sequence: 42644_LB2D Length: (1967 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g18390 68416.t02083 expressed protein contains Pfam do... 7842 0. 1 At4g37820 68417.t04917 expressed protein Kaposi's sarcoma... 360 2.1e-07 1 At4g08710 68417.t01373 hypothetical protein contains Pfam... 337 2.7e-06 1 At3g50690 68416.t05158 leucine-rich repeat family protein 303 9.1e-05 1 >At3g18390 68416.t02083 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578) Length = 4487 Minus Strand HSPs: Score = 7842 (1182.7 bits), Expect = 0., P = 0. Identities = 1620/1675 (96%), Positives = 1620/1675 (96%), Strand = Minus / Plus Query: 1777 GAAACTTATTTCTCAGTATCCAAAACGATGGCGAAGAAGACACTTCGCTGAAGCNNNNNN 1718 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 GAAACTTATTTCTCAGTATCCAAAACGATGGCGAAGAAGACACTTCGCTGAAGCTTTTTT 60 Query: 1717 NNCCAAAAAAATTTCTTAGTGTCGTCAATGGCTTTGGCTCCACTTAATTTTACGGAAATG 1658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 TTCCAAAAAAATTTCTTAGTGTCGTCAATGGCTTTGGCTCCACTTAATTTTACGGAAATG 120 Query: 1657 CCACTGAGAAGCTCTCTTCCTCTGACCTCTAGCTCTCGCTATTGTTCCTCTCCTTCGCTT 1598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CCACTGAGAAGCTCTCTTCCTCTGACCTCTAGCTCTCGCTATTGTTCCTCTCCTTCGCTT 180 Query: 1597 CACGCATTGCTCTTCTATTCGTTGGGTGTGAAACCCTCGCGTCAACAAATTGTTCGGCCA 1538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 CACGCATTGCTCTTCTATTCGTTGGGTGTGAAACCCTCGCGTCAACAAATTGTTCGGCCA 240 Query: 1537 TTCTCTTCGCTGCGTACAAGCGAGCGTAGCAACAACAGGAGCAATAACAATCGTCGATTA 1478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 TTCTCTTCGCTGCGTACAAGCGAGCGTAGCAACAACAGGAGCAATAACAATCGTCGATTA 300 Query: 1477 GATCAACGTAATCATAAACCTACTCCTCCTTGGATAGATAAGTGGCCTCCGTCATCCTCC 1418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 GATCAACGTAATCATAAACCTACTCCTCCTTGGATAGATAAGTGGCCTCCGTCATCCTCC 360 Query: 1417 GGAGCTGGCGGTGATCATGCCGGGAAGAAAGGTGGTGAAAACAACGGCGGAGATAGAATT 1358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 GGAGCTGGCGGTGATCATGCCGGGAAGAAAGGTGGTGAAAACAACGGCGGAGATAGAATT 420 Query: 1357 CGGTCTGCGGAGGAGGAAGCGGAAGCGAAACTTCGGTATTTGGAGAAGGATAAAGGACAA 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 CGGTCTGCGGAGGAGGAAGCGGAAGCGAAACTTCGGTATTTGGAGAAGGATAAAGGACAA 480 Query: 1297 AACGCGATTGAGAGGATTGTTCTTCGGCTACGGAATTTAGGATTAGGTTCGGATGATGAG 1238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 AACGCGATTGAGAGGATTGTTCTTCGGCTACGGAATTTAGGATTAGGTTCGGATGATGAG 540 Query: 1237 GACGATGTGGAAGATGACGAGGGAGGTGGAATTAACGGCGGAGATGTGAAGCCGGTGACT 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 GACGATGTGGAAGATGACGAGGGAGGTGGAATTAACGGCGGAGATGTGAAGCCGGTGACT 600 Query: 1177 GGAGAAGAGAGATTGGGGGATTTGTTGAAGAGAGAGTGGGTGAGACCTGATATGATGCTT 1118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 GGAGAAGAGAGATTGGGGGATTTGTTGAAGAGAGAGTGGGTGAGACCTGATATGATGCTT 660 Query: 1117 GCTGAGGGAGAAGAGAGTGAGGAAGAGGATGAGGTATTATTGCCATGGGAGAAAAATGAG 1058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 GCTGAGGGAGAAGAGAGTGAGGAAGAGGATGAGGTATTATTGCCATGGGAGAAAAATGAG 720 Query: 1057 GAAGAGCAGGCGGCGGAGAGAGTAGTAGGAGAAGGAGGAGTGGCGGTGATGCAGAAGAGG 998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 GAAGAGCAGGCGGCGGAGAGAGTAGTAGGAGAAGGAGGAGTGGCGGTGATGCAGAAGAGG 780 Query: 997 AGAGCTAGAGCTCCATCACTGGCGGAGCTCACCGTTGAGGATTCTGAGTTACGGCGGTTA 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 AGAGCTAGAGCTCCATCACTGGCGGAGCTCACCGTTGAGGATTCTGAGTTACGGCGGTTA 840 Query: 937 AGGAGGGATGGAATGTATCTGAGGGTTAGGATCAATATACCAAAAGCTGGGCTAACGCAG 878 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 AGGAGGGATGGAATGTATCTGAGGGTTAGGATCAATATACCAAAAGCTGGGCTAACGCAG 900 Query: 877 GCAGTGATGGAGAAGATTTATGATACTTGGAGGAAAGAAGAGCTTGTGAGGCTAAAGTTC 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 GCAGTGATGGAGAAGATTTATGATACTTGGAGGAAAGAAGAGCTTGTGAGGCTAAAGTTC 960 Query: 817 CACGAAGTGCTTGCTCGTGACATGAAGACGGCCCATGAGATTGTTGAGGTTCGTTAGTTC 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 CACGAAGTGCTTGCTCGTGACATGAAGACGGCCCATGAGATTGTTGAGGTTCGTTAGTTC 1020 Query: 757 TCTTGAATACTTCATTGATTAGAACAGTAGGTTAGCGAAATTTGAGGTGCGAGATTATTC 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 TCTTGAATACTTCATTGATTAGAACAGTAGGTTAGCGAAATTTGAGGTGCGAGATTATTC 1080 Query: 697 CAAGAGAGAGCGGTTTTCATTATCTATTGGGGATAAGCTTTGCGGAAGTGACATGATCTT 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 CAAGAGAGAGCGGTTTTCATTATCTATTGGGGATAAGCTTTGCGGAAGTGACATGATCTT 1140 Query: 637 TATAGGATAGTAAGAGACTCTGAAGTACCTAAGCTCTGAAATAGAATGGTTATAAAGCTT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 TATAGGATAGTAAGAGACTCTGAAGTACCTAAGCTCTGAAATAGAATGGTTATAAAGCTT 1200 Query: 577 TTATAATAACAGTAGGAAATTTGTGAAAAACGTTAGATCTTTCTTGGGAACGATTATATA 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 TTATAATAACAGTAGGAAATTTGTGAAAAACGTTAGATCTTTCTTGGGAACGATTATATA 1260 Query: 517 GTTGTGAATAAGGTGAATTTGAGGTGTTGATTAACTAGAGTGGATGGAGCTGAGCATGCT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 GTTGTGAATAAGGTGAATTTGAGGTGTTGATTAACTAGAGTGGATGGAGCTGAGCATGCT 1320 Query: 457 GTTAGAATTCTTTGAGTAACAAGACTGTGCAGGAGATGCATGTCTTAACTTTAGGTTTNN 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 GTTAGAATTCTTTGAGTAACAAGACTGTGCAGGAGATGCATGTCTTAACTTTAGGTTTAA 1380 Query: 397 NNNNNNNCTGATTGAATTACTCTAATGGGCAGCGTCGAACTGGTGGAATGGTGATATGGA 338 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 AAAAAAACTGATTGAATTACTCTAATGGGCAGCGTCGAACTGGTGGAATGGTGATATGGA 1440 Query: 337 GGGCCGGAAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCT 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 GGGCCGGAAGTGTAATGGTGGTTTATCGTGGACTTGACTATAAAGGACCTCCTGTGATCT 1500 Query: 277 CTAATCAAATGGCCGGTCCTAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCG 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 CTAATCAAATGGCCGGTCCTAAAGAGACTCTTTTTGTCCCAGATGTATCTTCTGCTGGCG 1560 Query: 217 ATGAAGCAACAAATGCCAAAGATAACCAAATTG-ACAAATTG-ACGCTTAGA-CA-A-CT 163 |||||||||||||||||||||||||||||| || || | | | | ||| | | | Sbjct: 1561 ATGAAGCAACAAATGCCAAAGATAACCAAAGTGCACCTTTGGTAATCAAAGATCCGATCA 1620 Query: 162 T-AATAACAC-ATTGCGGAC-GTTTTTAATGTACTGAATTA-ACGCCGAATTGAA 112 | || ||| | ||| || | | || || || ||| | | | ||||| || Sbjct: 1621 TCAAGAACCCTATT-CGCAAAGAGAATA-TG-ACAGAAGAAGAAGTTGAATTTAA 1672 >At4g37820 68417.t04917 expressed protein Kaposi's sarcoma-associated herpes-like virus ORF73gene, Kaposi's sarcoma-associated herpesvirus, U52064 Length = 2217 Minus Strand HSPs: Score = 360 (60.1 bits), Expect = 2.1e-07, P = 2.1e-07 Identities = 356/612 (58%), Positives = 356/612 (58%), Strand = Minus / Plus
Border_2 (42644_LB1U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGATCATCAATCAAAGAACCCTATTCGCAAAGAGAATATGACAGAAGAAGAAGTTGAATTTAACAGTCTATTAGACAGCTTAGGTCCACGTTTTCAAG
AGTGGTGGGGTACTGGGGTACTACCTGTGGACGCTGACTTACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGGCTTCTTCCTACTGGGATGAG
ATCAAATTTGACCAATGCCGAAATGACAAATCTCAGGAAGATTGGTAAAACTCTCCCATGCCATTTTGCTCTTGGTAAGCTGCTTTCTGATCCTAGATGA
TTTTTTCCCGATGGCTCTTATATTTTGTGTGCCGATGTTTAGGCTTGAATCTGCACTTTACAGGTAGGAACAGAAATCACCAAGGATTGGCAGCTGCAAT
ACTCCAGATCTGGGAGAAAAGTCTAATTGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAACAAACTAATGGCGGATGAAGTGAAGGTCTCT
CTTATCTTTTTTTCTCTAAAGTTCACTGTTAGGGAAAAGTAATTTCTAAGACAGCCCACAAATTGATGGTGCATAGCAGAAAAGTTTCTGTCATTTCCTG
AGTTCTATATTATGGATGATGTTTAGGA
| Start of BLAST Alignment: | NT 1529 / Exon 2 of 8 |
| First 15 bp Perfect Match: | NT 1537 / Exon 2 of 8 |
BLAST Details: Query Sequence: 42644_LB1U Length: (828 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g18390 68416.t02083 expressed protein contains Pfam do... 3075 7.8e-135 1 At4g29750 68417.t03933 expressed protein contains Pfam do... 502 6.2e-17 1 At5g16180 68418.t01719 hypothetical protein contains Pfam... 289 9.9e-05 1 At1g02700 68414.t00196 expressed protein similar to hypot... 216 0.20 1 >At3g18390 68416.t02083 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578) Length = 4487 Plus Strand HSPs: Score = 3075 (467.4 bits), Expect = 7.8e-135, P = 7.8e-135 Identities = 619/621 (99%), Positives = 619/621 (99%), Strand = Plus / Plus Query: 208 ATCAATCAAAGAACCCTATTCGCAAAGAGAATATGACAGAAGAAGAAGTTGAATTTAACA 267 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 ATCA-TCAA-GAACCCTATTCGCAAAGAGAATATGACAGAAGAAGAAGTTGAATTTAACA 1674 Query: 268 GTCTATTAGACAGCTTAGGTCCACGTTTTCAAGAGTGGTGGGGTACTGGGGTACTACCTG 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1675 GTCTATTAGACAGCTTAGGTCCACGTTTTCAAGAGTGGTGGGGTACTGGGGTACTACCTG 1734 Query: 328 TGGACGCTGACTTACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGGCTTCTTC 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1735 TGGACGCTGACTTACTACCTCCTACAATTCCTGGTTATAAAACACCTTTCAGGCTTCTTC 1794 Query: 388 CTACTGGGATGAGATCAAATTTGACCAATGCCGAAATGACAAATCTCAGGAAGATTGGTA 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1795 CTACTGGGATGAGATCAAATTTGACCAATGCCGAAATGACAAATCTCAGGAAGATTGGTA 1854 Query: 448 AAACTCTCCCATGCCATTTTGCTCTTGGTAAGCTGCTTTCTGATCCTAGATGATTTTTTC 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1855 AAACTCTCCCATGCCATTTTGCTCTTGGTAAGCTGCTTTCTGATCCTAGATGATTTTTTC 1914 Query: 508 CCGATGGCTCTTATATTTTGTGTGCCGATGTTTAGGCTTGAATCTGCACTTTACAGGTAG 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1915 CCGATGGCTCTTATATTTTGTGTGCCGATGTTTAGGCTTGAATCTGCACTTTACAGGTAG 1974 Query: 568 GAACAGAAATCACCAAGGATTGGCAGCTGCAATACTCCAGATCTGGGAGAAAAGTCTAAT 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1975 GAACAGAAATCACCAAGGATTGGCAGCTGCAATACTCCAGATCTGGGAGAAAAGTCTAAT 2034 Query: 628 TGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAACAAACTAATGGCGGATGA 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2035 TGCAAAGATCGCTGTGAAGCGAGGTATCCAGAATACAAATAACAAACTAATGGCGGATGA 2094 Query: 688 AGTGAAGGTCTCTCTTATCTTTTTTTCTCTAAAGTTCACTGTTAGGGAAAAGTAATTTCT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2095 AGTGAAGGTCTCTCTTATCTTTTTTTCTCTAAAGTTCACTGTTAGGGAAAAGTAATTTCT 2154 Query: 748 AAGACAGCCCACAAATTGATGGTGCATAGCAGAAAAGTTTCTGTCATTTCCTGAGTTCTA 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2155 AAGACAGCCCACAAATTGATGGTGCATAGCAGAAAAGTTTCTGTCATTTCCTGAGTTCTA 2214 Query: 808 TATTATGGATGATGTTTAGGA 828 ||||||||||||||||||||| Sbjct: 2215 TATTATGGATGATGTTTAGGA 2235 >At4g29750 68417.t03933 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578) Length = 3077 Plus Strand HSPs: Score = 502 (81.4 bits), Expect = 6.2e-17, P = 6.2e-17 Identities = 278/458 (60%), Positives = 278/458 (60%), Strand = Plus / Plus