At5g08170 SYNGENTA 43301
Genomic Sequence (from TAIR)
gcatagctatatatctttttgaattgttatgttagaagtttgttgaaatgaaagattacggttgaaatgacaataaaaacaagaaaagaaaaagaaaaat atcaaaacaacttttgtcgtgtttgggtcactagattgggtttaggattccgattctgctcgcctctggattctgattccgctcaccactaatagtgggg tcgtgcccggtcgtgtaatgagcataagtttcagtcgaatagttaaaaagatggggtccaactgtaagaaaatatattctatacgggtctcttaagaaaa ctgagaaattgtttcggaatctttttgtgtacctttctttttttttctcttcttggtcagaaaaagaagtattaggaatcaataacgcatacggtataca catcagtttaaagcttacatctgacttctctctcacaaaaacatcgtgaagaATGGAGGAGTCACGAGAATCGCCGGCGGAACACGGCTACTACATGCCG GCGGAATGGGATTCTCATGCTCAAACTTGGATCGGTTGGCCTgtaattctctatctctcttcctcttttctttttttttcatgttttattcattaa◄cct gaga►taaagtaaaaattgac►ggcgattctggagaactcaatctcgctgttcaaaaatcaaacttcgatttcgattttgtcctttttttttttttatat ggatcctgctcgtagtttatcattgttcgaattg◄ctgttttctgtttatttgatgatttctctgcttcctggttcgtttttgtagagtttccgataaat tttgtatagcttctgtatgtcaagttagcatctagatgtgacatgagatgagatcttttacattgcaatctatcatggttacagattctgcaaccaaatc agaatttaaagcattttcagttaggttgtttgtttcgatttgtttcatcactgaatacatgaatcaaacctcaaaccacttttgtgattttgaaatctgg attataattctgtcataatatggctgcagGAACGGCAAGATAACTGGCGGCACAACGCTTTACCCGCACAACGAGTGTTTGCAGATGTTGCAAAGGCCAT CTCAAAGTTCGAGCCTGTCACTGTCTGTGCTAGCCCTGCTCAGgtttgtttacaatcatacctgaaataagaaaacatctttgagtttctacatacagat accaagtagtctctcagtttactttctgtttttggcttacatgattgtgcttgcattagTGGGAAAATGCAAGGAAACAGCTTCCAGAGGATATAAGAGT TGTTGAGATGAGCATGAATGATTCTTGGTTCCGCGACTCTGGACCAACTgtgagtttacttctttagcttctcccttttctcaccatcttacaaagcttt ctaacaatttgttgttaccgctctcttttatacagTTCATTGTACGGAAAAGACCAGTAAAGCTCAGTTCTCTTAACCGAAACATTGCTGGGATCGACTG GAATTTCAATGCCTGGGGAGgtaaggatttggaaacctttttacattctcaactatttgtagtcactgcttgactcacttttcccatggcagGAGCTAAT GATGGCTGTTACAATGATTGGAGTCATGACCTTTTAGTTTCACGAAAGgtaccgtatttggagaaataaaccttctagtcattattggtttccatatcac taacattagcatattacaaatattgatttgctctttcttctcctacccatcagATTCTCGCTTTGGAACGAATTCCAAGATTTCAACATTCGATGATTCT TGAAGGAGGCAGCATCCATGTCGATGGGGAAGgtttgcatacatttcatagtgacttgaaaacgcaataacttgcaaaaaaacagattatctgagtttat aattgttcacaatcccactttgttgctttgcttattctactttcagGAACCTGCCTTGTCACAGAAGAGTGTCTCTTGAACAAAAACCGAAACCCTCATA TGAGTAAAGAGCAAATAGAGGAAGAACTTAAGAAGTACCTCGGAGTACAATCATTTATCTGGCTTCCTCGTGGTCTTTACGgtactccacttgctacatc ggttacaattgccatcgcttatttcgaaagaaataattgtcaatcttatagaaattttaatggttgtcagGGGATGAGGACACAAATGGTCACATTGATA ACATGTGCTGCTTCGCTAGACCGGGAGTTGTGTTATTGTCTTGGACAGACGATGAAACCGATCCTCAATACGAAAGGTCTGTGGAAGCTCTTTCGGTTTT GTCGAATTCGATTGATGCTCGTGGAAGGAAGATTCAAGTCATTAAACTTTATATCCCGGAACCCCTTTATATGACTGAAGAAGAATCGTCTGGAATCACT CAGgtaatgaatactgactagataaaactcaatcttttgaagttgttttgaaacaaatatttcatcgatttcattgttgcagGATGGTGAAGCTATACCA AGACTTGCAGGGACAAGACTCGCAGCATCGTATGTGAATTTCTACATCGCCAATGGAGGAATAATCGCTCCACAATTCGGTGATCCAATACGTGATAAAG AAGCGATTCGTGTCCTCTCGGATACATTTCCTCATCACTCGgtattaaaaccatctctgtttcatttcatggatcaaaaacaaaaacagattttgatttt tcttcttcttcttctgaattttttttgaagGTTGTGGGAATCGAGAATGCAAGAGAGATCGTTCTTGCTGGAGGAAACATTCATTGTATAACGCAGCAGC AGCCGGCGGAGCCTACTTCCGTCGCCGAAAATGGCCACTGActgtctctgcgcgccaccgagggatttatgaatcctggccgttgatattttaaaataca gatttgaagcttgaggacgaacgagagccgttcattaattggatcctgtattttatggttcgttgactaagaaatatattattgggtcatcattccgatc aaactttgcttgcattatggcataacaattagatttttgttctgttaattatgcaagtttgaataattaatttacatttgtatttttttagtagaatttt cattttttttttcttaatttggccattcaaatctctacttttgaagtatttcattgttagttgttatattagttccatattacatgatgactactaaatt gtggattataaactgattgtcttttgttggtacgactttttctcgttaatgattttgttggatatattagcgttatgtttatttacccgaaccaattagc taaa
Border_1 (43301_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTAATGAATAAAACAT
GAAAAAAAAAGAAAAGAGGAAGAGAGATAGAGAATTACAGGCCAACCGATCCAAGTTTGAGCATGAGAATCCCATTCCGCCGGCATGTAGTAGCCGTGTT
CCGCCGGCGATTCTCGTGACTCCTCCATTCTTCACGATGTTTTTGTGAGAGAGAAGTCAGATGTAAGCTTTAAACTGATGTGTATACCGTATGCGTTATT
GATTCCTAATACTTCTTTTTCTGACCA:AGAAGAGAAAAAAAAAGAAGGGTCCCCAAAANGATTCCGAAACAATTTNTCAGTTTTTTTAAAANACCCGTA
TANAATATATTTTNTTACAGTTGGNCCCCATTTTTTTAACTATTCGACTGAAACTTATGCTCATTACACGACCGGGCACNACCCCACTNTTAGGGGGGAG
CGGAATCANAATCCAGAGGCNAGCANAATCGGAATCCTAAACCCAATNTAGNGACCCAAACACNACAAAAGTGGGTTGGAAATTTTTCTTTTTCTTTTCT
NGGTTTTATGGCNATTTCAACCGTAATCTTTCATTTCAACAAACTTTTAACATAACAATTCAAAAAGATATATAGCTATGCCAAAWAAAA:GTTGGGTAT
AA:CTTAATGTTGATTATTAACAAAAACTAAATTAGTCTGTATAATAAATAATGATG
| Start of BLAST Alignment: | NT 279 / Intron 1 of 9 |
| First 15 bp Perfect Match: | NT 144 / Intron 1 of 9 |
BLAST Details: Query Sequence: 43301_LBU Length: (854 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g08170 68418.t00873 porphyromonas-type peptidyl-argini... 832 5.2e-32 1 >At5g08170 68418.t00873 porphyromonas-type peptidyl-arginine deiminase family protein contains Pfam PF04371: Porphyromonas-type peptidyl-arginine deiminase Length = 2759 Minus Strand HSPs: Score = 832 (130.9 bits), Expect = 5.2e-32, P = 5.2e-32 Identities = 244/324 (75%), Positives = 244/324 (75%), Strand = Minus / Plus Query: 364 ACATCTGACTTCTCTCTCACAAAAACATCGTGAAGAATGGAGGAGTCACGAGAATCGCCG 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ACATCTGACTTCTCTCTCACAAAAACATCGTGAAGAATGGAGGAGTCACGAGAATCGCCG 60 Query: 304 GCGGAACACGGCTACTACATGCCGGCGGAATGGGATTCTCATGCTCAAACTTGGATCGGT 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 GCGGAACACGGCTACTACATGCCGGCGGAATGGGATTCTCATGCTCAAACTTGGATCGGT 120 Query: 244 TGGCCTGTAATTCTCTATCTCTCTTCCTCNNNNNNNNNNNNNNCATGTTTTATTCATTAA 185 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 121 TGGCCTGTAATTCTCTATCTCTCTTCCTCTTTTCTTTTTTTTTCATGTTTTATTCATTAA 180 Query: 184 ACAAAT-TGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTA-CTGAAT 127 | | | | | || | || || | | ||| ||| | | ||| | ||| Sbjct: 181 CCTGAGATAAAG--TAAA-AA-TTGACGGCG-ATTCTGGA-GAACTCAATCTCGCTGTTC 234 Query: 126 TAACGCCGAA-TT-GAATTCGATTTGGTG-TATCGAGATTGGT-TATGAAATTCAGATGC 71 || | || || || |||||||| || | | || | |||| | | | | | Sbjct: 235 AAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTTTTATATGGA-TCCTGCTCG 293 Query: 70 TAGTGTAATGTATTGGTA-ATTTG 48 |||| || | |||| | | ||| Sbjct: 294 TAGTTTA-TC-ATTGTTCGAATTG 315
Border_2 (43301_RBD)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
:TACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTAT
CAGTGTTTCTGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAACTTCGATTTCGATTTTGTCCTTTTTTTTTTT
| Start of BLAST Alignment: | NT 151 / Intron 1 of 9 |
| First 15 bp Perfect Match: | NT 167 / Intron 1 of 9 |
BLAST Details: Query Sequence: 43301_RBD Length: (281 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g08170 68418.t00873 porphyromonas-type peptidyl-argini... 311 3.0e-08 1 At3g48425 68416.t04908 endonuclease/exonuclease/phosphata... 151 0.99 1 >At5g08170 68418.t00873 porphyromonas-type peptidyl-arginine deiminase family protein contains Pfam PF04371: Porphyromonas-type peptidyl-arginine deiminase Length = 2759 Plus Strand HSPs: Score = 311 (52.7 bits), Expect = 3.0e-08, P = 3.0e-08 Identities = 71/79 (89%), Positives = 71/79 (89%), Strand = Plus / Plus Query: 192 TAAACTATCAGTGTTTCTGGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAAC 251 |||| || | | | | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 TAAAGTAAAAAT-TGAC-GGCGATTCTGGAGAACTCAATCTCGCTGTTCAAAAATCAAAC 245 Query: 252 TTCGATTTCGATTTTGTCC 270 ||||||||||||||||||| Sbjct: 246 TTCGATTTCGATTTTGTCC 264 >At3g48425 68416.t04908 endonuclease/exonuclease/phosphatase family protein similar to SP|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)(Class II apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium discoideum}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family Length = 2927 Minus Strand HSPs: Score = 151 (28.7 bits), Expect = 4.5, P = 0.99 Identities = 53/74 (71%), Positives = 53/74 (71%), Strand = Minus / Plus