At4g20060 SYNGENTA 43685
Genomic Sequence (from TAIR)
cattattgtacgattgtagtctaaaaaaaaagaagttgtgttattgtgcaaaccaaaaggacctacgaaagtataaaaacctaaagatacaaggcccaat agtggtgagcccatcacgatcgcgtattctcttaaaccggatcacttacctgaaccgaaccggaatcggcagctaataatttgaagtcgggtttggtcct cgattgaatttttatgttctgtaaattcgtgagaagaggcttcttcatctgcgtatggcgtgaaaattcgtaatctttcgtttgacagaactcttctatt tatcatcaatctccggtttcttcttctttgtaagccctaagaagccaaaaagtgctaaccATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCA TCAAGCTCGAGAAATCTCTTCGTTCTAAAAACTCAGgtcctttcttccgcttttcaacttcatagttcttagaaatttcgaatttcagctcctcttgttg tttcacattaagcaaacctctaaattgctttgctttacttatttggcgaatatatgttcttgttgtcttctctggaactatgaaagtataaagttttgag ttttgggtgatattatttcagTTAAAGCCGTTGAAGCTATCTTAGAGACTGGTGGGAAGCTTGAACAGTGGAGTAAAGAACCAGAATCTGCTATTGCTGT TTACAATTTATTTGGTTTGGTTCCTGAAGAAGATAAGCTCTTTTCAAATACTATCCTGTTGAGGCTTGTTGACGCGTTTTGTGTTGGGGATAAGCTTATT AAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTTAAGCTAAGCCGAGGGAAGAACGTAAATGAATCAGCAAGTTGGTTTTTGTCAAAGGGTAGGGTGC ATAACCACTTGGAATTGCTTACACGAGTGAAGAATGTGTATGATAAGGGTGATACTGAGTCTAAAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGA TTTTGCTAGCGAATTTGCTCCTGTACGGTATTTGGTTTTCAGCAGTATGGTTTCTCCTCATGATCTGGAGgtaagcatagttcattttagttcttttgtt gatgtgtttgcttcggagtttctgttatgaaggctaaaaatttgatacttaatagaagtagtggttgtgatacatcaaactggagttcataatttctcac gcatttggcactgtgttctgtggctagtgtatattaccgtgagggtcattcaatgtgtatgtcagggtttttttaaaagttaatttgaagagtgagtagc tttgtttagtccaagtttaaagaaaaacctcaactgtgaatctgtgatttgaacttggttgttggaatattcttgttgtagaatttgaactgttctaatc cgttttatgcttgcagGGAAGATCAGCTCTGTTTGCTGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCATTGGTTGTTCTGGGGATGTTAAACGAC ATGGTGAAGTTCCCAGACATAACGCCAAAGACCAGGTTAGCTGCTGTGCGAGTTTTTGCAAAAATGGGATGCTCGCATACAATTGCTAATAGAGCATTCA AGgttctttatctaattctttttctatctgcttctaatgctcaaagattctcatgtatagtaagccgtcaagaagtttttggtaaagaaagatttgctga aactggaattgaattttgctgttgttaccatcttgcgatttcaaaatatagtagattactagattaagagttacttgtgtgatgaaactctgtcaatgta cggaatatcatagcaatgcattaaataaagccatctgtattgaacttcagtcaaccattatgttattgtagATTTGTATGAAGCTAATGCTGGACTCCCC AAAAGAGGACAATTTGGTTCCATTCCTGGTTTCCTTGACTAAGCTTGCTTCAAGATCAACTCATCTTGCTTCTGAACTGgtatgttctttttcgccttat acttttttctaattcctggtttacacagattaaatgttttgaagtcaatattggcccttgtgaaaatagaatttctacaatagaaagccactgttttgct gagtttgagtcttcactggttggttgatataaattgcaaataaggcatcacttttcattggttctctgaaaggaaactatccctctattgattacaaaca aactaatagagaaaagtataatagtattcaatgtgggtgcagGCAGAGGTTATCATACCCTTTCTGGGTGAAGATAAAACTTCTCATGCTCGAGCTGCAG TATTGAGATGTCTCCACTTTCTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGATATTGCAAGTGTTTCAAGCTTATTAAAGCAAGAAGA GCTCTCATCAGATATGCAAGTTAAAGCTCTTCAAATTTTTCAGAAGgtacttcatacgccaaatatttttatttcttttgcaaattgacgatgcttactt accgttgatgtgaatgcagATAGTTGTCTACAAACTATGCATGACTGATGCATCTGAATTACTTCAGCTCATAGCTATTACTGAGAATGCATCTCATTCT CAGATCTTTTCAAGCAGTTGTTTAGCCATCAGTGTCTTGGTGAGTATATGGACAGAAATAGTTCGGACAGCGGAAAAAAGATCAATTGAGATATCTTCAA CATCTCTTCCGATGCAGCTCGTTGTATTAATCATGGACAGGGTCGCCTTGCTGGGGCGATTATGTTCTGATCTTTTTCGAGCTGGCTATGCTGTAGTTAG TGAGGTTCAAGACCTCTTGAAGGTTCTCCACCTATTAGTAGGAAAACATTCTGAACTGAGACTGCTAGTTCTTGAAAAAGTCAGATTATTCTTAACGTAT ATTGTGAGCCTAA◄ATGATGGCTTAAGAAAAGCAGATGGAGCTCATGAATTGCTATTTGGTGT►TATCAATT►ATAAAGACAAAAGAGGGGTGGTCATGA GGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAAAATCTCGAGGGAGATGATAATCTTTTGTCTGAAATTTATGAAAAGGTGAA GCATATCACTGAGTTTGTAAGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTCACACTGCTACTACATTCCCCGATTCTTTGGGGATTCTCT GTGAATGATGATACAGGAAATTCAGGCGTATCACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTTAATGGAGA GAAACTACTGGCCTGCTTACAGAGCTGGGGTTTACGCAGCACGTTTGGGTGCTTGGGTCACATCTGCTATGATTTTTGACCAGCTCAAAACCAACGTCCA GTCTGATATTAATTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCTTCTCACTCCAAGTGATAGTGTCAAGTTA GTCAATTGGCTGAAAAATAATGGTTATTTACCAGAACTCTCCAAAGATGCCTCTGGAGAGTTTGCACACTGTCTAGCTCTTCGTGAAGCTTATATGAATT TACAATCGTCTCTGGGAATGTTGGGAAATATTATAGCGTCAAGTGGAGTATTCTGTTTCCAAACGTGGTTCTTGGTTCTAAAGACTCGGGTATTGGAAAC CGTGCTTGAACTCGTCGAATGCCTTGGGCTGCTTAACCAAGATTTACGCAACAAGAATCAGGTGGAAGAAATACTCTTGACTGGTTGCGATTCCCTGCAA CAGCTTCCTCGGATTTCTATTCAGCTACAAAAGTTGGCAAAGGAATTTGATATGTTGGCGACGTGTTTCATAGACATAGACGATAGCAGTTCTAGCATTA TCACAACAATTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAATTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTGGTTCCTTTCAC TTCACAAAGCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGGCTGTGGAAAGTAGACCCCAATGTCTGCGAAAAGCTCAACATACTCGTTAAC ACAAACGAGTCGTTAAACTGTTTCCATTTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTAAAGATGCTGCTCTCTATTTGCAGAGATGCTC TTTCATGCACTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAAGAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTACTGTCACAAGC AATTATGAAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTTGGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGT AGCAAACGTATTCCTGACACAGTTTCAGTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACATAAAACAACGGCAAGTCCCTG TTCGACTTAACAAACTGTATTGCCTTCTCTATACTAAACTAGCTTATCATTCTCCAACTCAACACGGTGAAAACAACAGAAACCAAATGTCTTATTCCCC TTGGAGAGATGAAGATCTGATTGAAATGAGTAACAAGCTGTTTCATCATGCTATAAAGTCTGGTAAGAAGCCGGACGTCTCAGGTCGATTTGATTGGGCC AAGAGTGGTGTTTCTACGGTTGTGCAGTTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGTTAGACGTTTCGCGTTTCCCGGTTGGTTCAT ATCAAATAAAATGGCTAAGCTGTTGCGTTGATCAACATGGTTCTTACTGGAATCTTCTACCTCTCAATGGCAAACCTGTGTTTACGGTTAAGAAAGCGTC ATGActagaataagtgttggttttgacatggcggaagagtaaaaagatctaaggaggatctagttcgggagcaagcaagaaatgagacagagattggctt taagactaatctcgaaatatgcagctacacataagagagatgtttgcttcaacactatttaggtgaactaatttttattggtatgttgttatgttatgtt aactagattgtagactaaaatccatgaaaattaaagcttgaaaagctaaagtcaattccatctaacactgatatgtgataattagctaataagtaataat taaagcttttaatgaaagtaaaatttttgttggtgaccaaatattactcaaatatatatttactattgttcagattattatacaaatacaagaacggttc aga
Border_1 (43685_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAATTTGTTAGGCTCACAATATACGTTAAGA
ATAATCTGACTTTTTCAAGAACTAGCAGTCTCAGTTCAGAATGTTTTCCTACTAATAGGTGGAGAACCTTCAAGAGGTCTTGAACCTCACTAACTACAGC
ATAGCCAGCTCGAAAAAGATCAGAACATAATCGCCCCAGCAAGGCGACCCTGTCCATGATTAATACAACGAGCTGCATCGGAAGAGATGTTGAAGATATC
TCAATTGATCTTTTTTCCGCTGTCCGAACTATTTCTGTCCATATACTCACCAAGACACTGATGGCTAAACAACTGCTTGAAAAGATCTGAGAATGAGATG
CATTCTCAGTAATAGCTATGAGCTGAAGTAATTCAGATGCATCAGTCATGCATAGTTTGTAGACAACTATCTGCATTCACATCAACGGTAAGTAAGCATC
GTCAATTTGCAAAAGAAATAAAAATATTTGGCGTATGAAGTACCTTCTGAAAAATTTGAAGAGCTTTAACTTGCATATCTGATGAGAGCTCTTCTTGCTT
TAATAAGCTTGAAACACTTGCAATATCTCTTTCATGGGCAAGAGAGAAGCACATCCCTCTTTCTATGAGAAAGTGGAGACATCTCAATACTGCAGCTCGA
GCATGAGAAGTTTTATCTTCACCCAGAAAGGGTATGATAACCTCTGCCTGCACCCACATTGAATACTATTATACTTTTCTCTATTAGGTTTGTTTGTAAT
CAATA
| Start of BLAST Alignment: | NT 2553 / Exon 6 of 6 |
| First 15 bp Perfect Match: | NT 2553 / Exon 6 of 6 |
BLAST Details: Query Sequence: 43685_LB1 Length: (905 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g20060 68417.t02759 expressed protein ; expression su... 3630 6.6e-160 1 At3g45850 68416.t04608 kinesin motor protein-related kine... 236 0.040 1 >At4g20060 68417.t02759 expressed protein ; expression supported by MPSS Length = 4541 Minus Strand HSPs: Score = 3630 (550.7 bits), Expect = 6.6e-160, P = 6.6e-160 Identities = 728/729 (99%), Positives = 728/729 (99%), Strand = Minus / Plus Query: 905 TATTGATTACAAACAAACCTAATAGAGAAAAGTATAATAGTATTCAATGTGGGTGCAGGC 846 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1826 TATTGATTACAAACAAAC-TAATAGAGAAAAGTATAATAGTATTCAATGTGGGTGCAGGC 1884 Query: 845 AGAGGTTATCATACCCTTTCTGGGTGAAGATAAAACTTCTCATGCTCGAGCTGCAGTATT 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1885 AGAGGTTATCATACCCTTTCTGGGTGAAGATAAAACTTCTCATGCTCGAGCTGCAGTATT 1944 Query: 785 GAGATGTCTCCACTTTCTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGA 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1945 GAGATGTCTCCACTTTCTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGA 2004 Query: 725 TATTGCAAGTGTTTCAAGCTTATTAAAGCAAGAAGAGCTCTCATCAGATATGCAAGTTAA 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2005 TATTGCAAGTGTTTCAAGCTTATTAAAGCAAGAAGAGCTCTCATCAGATATGCAAGTTAA 2064 Query: 665 AGCTCTTCAAATTTTTCAGAAGGTACTTCATACGCCAAATATTTTTATTTCTTTTGCAAA 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2065 AGCTCTTCAAATTTTTCAGAAGGTACTTCATACGCCAAATATTTTTATTTCTTTTGCAAA 2124 Query: 605 TTGACGATGCTTACTTACCGTTGATGTGAATGCAGATAGTTGTCTACAAACTATGCATGA 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2125 TTGACGATGCTTACTTACCGTTGATGTGAATGCAGATAGTTGTCTACAAACTATGCATGA 2184 Query: 545 CTGATGCATCTGAATTACTTCAGCTCATAGCTATTACTGAGAATGCATCTCATTCTCAGA 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2185 CTGATGCATCTGAATTACTTCAGCTCATAGCTATTACTGAGAATGCATCTCATTCTCAGA 2244 Query: 485 TCTTTTCAAGCAGTTGTTTAGCCATCAGTGTCTTGGTGAGTATATGGACAGAAATAGTTC 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2245 TCTTTTCAAGCAGTTGTTTAGCCATCAGTGTCTTGGTGAGTATATGGACAGAAATAGTTC 2304 Query: 425 GGACAGCGGAAAAAAGATCAATTGAGATATCTTCAACATCTCTTCCGATGCAGCTCGTTG 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2305 GGACAGCGGAAAAAAGATCAATTGAGATATCTTCAACATCTCTTCCGATGCAGCTCGTTG 2364 Query: 365 TATTAATCATGGACAGGGTCGCCTTGCTGGGGCGATTATGTTCTGATCTTTTTCGAGCTG 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2365 TATTAATCATGGACAGGGTCGCCTTGCTGGGGCGATTATGTTCTGATCTTTTTCGAGCTG 2424 Query: 305 GCTATGCTGTAGTTAGTGAGGTTCAAGACCTCTTGAAGGTTCTCCACCTATTAGTAGGAA 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2425 GCTATGCTGTAGTTAGTGAGGTTCAAGACCTCTTGAAGGTTCTCCACCTATTAGTAGGAA 2484 Query: 245 AACATTCTGAACTGAGACTGCTAGTTCTTGAAAAAGTCAGATTATTCTTAACGTATATTG 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2485 AACATTCTGAACTGAGACTGCTAGTTCTTGAAAAAGTCAGATTATTCTTAACGTATATTG 2544 Query: 185 TGAGCCTAA 177 ||||||||| Sbjct: 2545 TGAGCCTAA 2553 >At3g45850 68416.t04608 kinesin motor protein-related kinesin-related protein TKRP125, Nicotiana tabacum, PIR:T02017 Length = 5339 Minus Strand HSPs: Score = 236 (41.5 bits), Expect = 0.041, P = 0.040 Identities = 398/727 (54%), Positives = 398/727 (54%), Strand = Minus / Plus
Border_2 (43685_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACATTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAATAAAGACAAAAGAGGGGTGGTCATGAGGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAAAATCTCGAGGGAGATGAT
AATCTTTTGTCTGAAATTTATGAAAAGGTGAAGCATATCACTGAGTTTGTAAGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTCACACTGC
TACTACATTCCCCGATTCTTTGGGGATTCTCTGTGAATGATGATACAGGAAATTCAGGCGTATCACTTGTTGCTGATATAGTTAACTATGGAATCGTTTC
TCTTGACTGTTCAAATCAGATTTTAATGGAGAGAAACTACTGGCCTGCTTACAGAGCTGGGGTTTACGCAGCACGTTTGGGTGCTTGGGAA
| Start of BLAST Alignment: | NT 2602 / Exon 6 of 6 |
| First 15 bp Perfect Match: | NT 2610 / Exon 6 of 6 |
BLAST Details: Query Sequence: 43685_LB2 Length: (591 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g20060 68417.t02759 expressed protein ; expression su... 1924 1.4e-81 1 At2g13020 68415.t01360 gypsy-like retrotransposon family ... 225 0.051 1 At5g34856 68418.t03782 gypsy-like retrotransposon family ... 198 0.66 1 At3g42434 68416.t04055 gypsy-like retrotransposon family ... 197 0.70 1 >At4g20060 68417.t02759 expressed protein ; expression supported by MPSS Length = 4541 Plus Strand HSPs: Score = 1924 (294.7 bits), Expect = 1.4e-81, P = 1.4e-81 Identities = 388/392 (98%), Positives = 388/392 (98%), Strand = Plus / Plus Query: 198 TATCCTGAATAAAGACAAAAGAGGGGTGGTCATGAGGTCAGAGTTTCTAGCATCAATACA 257 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2603 TATCAATTATAAAGACAAAAGAGGGGTGGTCATGAGGTCAGAGTTTCTAGCATCAATACA 2662 Query: 258 CAAGTTCCTGATAGTGTTCTTGGAAAATCTCGAGGGAGATGATAATCTTTTGTCTGAAAT 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2663 CAAGTTCCTGATAGTGTTCTTGGAAAATCTCGAGGGAGATGATAATCTTTTGTCTGAAAT 2722 Query: 318 TTATGAAAAGGTGAAGCATATCACTGAGTTTGTAAGTTCATGCAGCTTCATTGATTTCCA 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2723 TTATGAAAAGGTGAAGCATATCACTGAGTTTGTAAGTTCATGCAGCTTCATTGATTTCCA 2782 Query: 378 CACACAAATGATATTCACACTGCTACTACATTCCCCGATTCTTTGGGGATTCTCTGTGAA 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2783 CACACAAATGATATTCACACTGCTACTACATTCCCCGATTCTTTGGGGATTCTCTGTGAA 2842 Query: 438 TGATGATACAGGAAATTCAGGCGTATCACTTGTTGCTGATATAGTTAACTATGGAATCGT 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2843 TGATGATACAGGAAATTCAGGCGTATCACTTGTTGCTGATATAGTTAACTATGGAATCGT 2902 Query: 498 TTCTCTTGACTGTTCAAATCAGATTTTAATGGAGAGAAACTACTGGCCTGCTTACAGAGC 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2903 TTCTCTTGACTGTTCAAATCAGATTTTAATGGAGAGAAACTACTGGCCTGCTTACAGAGC 2962 Query: 558 TGGGGTTTACGCAGCACGTTTGGGTGCTTGGG 589 |||||||||||||||||||||||||||||||| Sbjct: 2963 TGGGGTTTACGCAGCACGTTTGGGTGCTTGGG 2994 >At2g13020 68415.t01360 gypsy-like retrotransposon family (Athila) has a 7.3e-101 P-value blast match to GB:CAA57397 Athila ORF 1 [Arabidopsis thaliana] Length = 5877 Minus Strand HSPs: Score = 225 (39.8 bits), Expect = 0.053, P = 0.051 Identities = 193/336 (57%), Positives = 193/336 (57%), Strand = Minus / Plus