At3g07060 SYNGENTA 46250
Genomic Sequence (from TAIR)
attcgttatccaaagtcataataaccttgacttggaccagtcacctgaaagtcttgagtttttttcccttaagatcccgccgggctccggtgctggcggt taaacccttccaaaacctgaaattcgtttagcttaggacaaacaagtgaagcccaccatacagaaatgtctaacagaagcctccatttgaagaaaatatc atggctttcttctcggattctctcaggtttccgaattttgatcgtcttcttcgattctagctttctgggttcccactgtttaagcgttcttaacgatctt ttttggttgtcgttttgctcactagacaatgttcacggtcgatttcgccgatcaatcactactccagccacttgtttagctccttcactcgatggagacA TGAACATTGGATCCAAGACATTGGTCGAACAACGTTTCTCTCGCGGgtaattcgatttataatcttaattacttggacaggtgttttcatggtctctttc taattcgtcctggacagtctctttcagATTTGCATCAGTACGACGAGTATCTCGAGCTTCTTCTTCTTCTTCTTCTTCTCCTTCCTCTCCACATGTTGAT TTGCTCTCTTTTATTAAAGCTTCACTTGATAAACTTGAAGgtaactgactgtatactgattcttacatctttttgtattggcttgaaacatctctttgtg ttgtaaacaacgttttgaaaatgaactcttagGTCCTTCCCATCATTGGTTGAATCGAGACTTTGGGAATAAACAGCTTTTCAAGGACAAAGGAACTTAT GTAGTTCTAGCTGGACATTTGCTAGACGGAACAAGTGATCTGAGTGGTTTCTTTGAGAAACTAAAGTTGCTTCAGCAGAGgtttaagaaagcttttattt ttgttaaaccaaagaataatggtaacttaacggcaattacggctaagtatttgttttgacttttcagGTCTCCGGGTGTCTGTTTCATGGGCATCCACTT CAGTGATCAAGCTCGAATCGCTGATGATCGAACTGCTCTAGCTGAGTTGATTTTGAAGGAATACCTCACTTTTCCTGTGCTACTTTCCGAAAAAGAATTT CCCAAGgtatatattgttatgtccaagaaatgtcgctgtagattacttctttgtatatcattccctcatgttatgtgcatatacctcgatttcaattgaa ggtgtgctgttttctacttgtatcagACAAGTGGGGAAGTACGTTACATCGTGTTTAAAGATTTTAAGAATCCTCTAATCTACGAAGAGAAGGATCTTGA TATTGCTTCTGTAGTTAAAGgtatgcctactttattatcatatattcactacaaatagtctctacaatgtcatacttattgttccatgttcaacttaaga gaaaacagaaattcattatgctacttttagcttgtgaatattcgtcgcttcagccttctatctcgtgatttgtgtgcttaatacatattctggtttcttt ttcttgcgctttgctgcagCTCTTGACAGCCTCCTCACTCAAGATACTGAGAAATCCAAGTCTGTCAGACTTTTCACGAACACTTGGTCAAAACAAGCAG AGGCTATCAAGGAATCACATTTCCCTTCTTTCTTTCAGGATTTGTTACTTTACTTTCCAGgtatgtctctttaattttctttcttttttggtctttttga aatttatcaggaattttcatttttgtctttcacgctactctctaatattttgctcacaaaaatttggaataaaattttgtttttttatttaacaattgac attctctgtgacagGTTGTATCTCTGCAGACGAAGTTGGAGACCGTCTGTTTCTTTCTGATACCAACCATCATCGTATTATTATTTTCGAAAACAGTGGG AAGATTGTAGACAGTgtaagtgaactgaatcacatttggggaattataatctttattgactttcttttctgaaatcccttagaagggcattcgtagagag aaaagtgcatttgaagctcattgtttaacaaccctaaagttcaaaacaatgtttttatttcagATTGGTTGTTTCCCAGGTTTTGAGGATGGAGATTTTG AATCTGCAAAGATGTTACGTCCTACAGGGACCCTTTACGACGAAGCGGAGGATTGTCTTTACATTGTAGATTCTGAGgtatgactcctagaagaagatac acaattatgattactggttgtgccattgaatgttttcatgttaagattgtttttcctctttgtttccttccttttccccattctttgggctaagaatcac gccattagaagagcaaatataaatagccgggtcctggaaacagtatatccaaagGTTATTAAGAAAACTGGTGGCTTATGGTCTTGGATAATGGAGAAAA TGGGTCTTGGAAAAGATGACGATACAACAGTTGATGCTGATACCAAATCAGAAGAATTTGATGCACGCTCTCTTTTGTTTCCATGGCATATACTGAAGCG TGACGATGAGAGTCTTTTAGTCATTAACAAAAGgtaaaaaaactatttaaa◄gggattgcttctttatagtagtgatagctcg►gtct►ctttttccttc ttttgctgcccctttaagttcgtaaccaaataggtttctcatatctttcagCTTTTCGAAGTTATGGATAATAAATTTTGCTTCAGGAGAGATCGAAGAA GTTGTGGAAGgttacatatgaatt◄gagatcttcttttaccgttttgtattatttcgtttgttgactcattgcatctaacagatatttatcaacatttta agGGTTTTCGAAGATAATTGAGATCTGCGGTCAATCAATCACAGAGAAGCTATCAGTGTTGGAACATATGCCTTCTAACTGGTTGCAACAGCAAACTGCG GCTATCGCCTCATTTAAGGAGCAGCCAAGTGCTTCCCTTTTGTCTTCTTTTACTAAACTTGGAGACGACATTGTCATGACAGATATAGgtaaacgacatc tacgcaactttgtttacatctttttcatctctatgcatcaactaactcattttgcctttgtacgttaagcttgtcagagggtgttgaagctaaatagaga ttctggagcatgctctagcattcaattctcaaacagtgggatccttgggttgccctattggttgttcattccactggagagagtttttaatctgttagtg atttctcattcattatcttatccattaacaacacttctcttgttctgaaactttctaattgatgttgtgttactttggctaaattataacagagctaatg gagttcaggaagcacatctcagtcatactcaggaactccggttattgccaggtgcgatttgctatacagaccctaattttttgctcatttactcatttgc ttatgctagtcttgatgttagcagttcatcaccccagtcccaattagctgcatcatgaagatggtttaacattggttccagccggaattggtttgattta attgctactttttcatttaacagGTAAAATTAGCATACGGTTGAACATAGAGATTCCTCCATGCACGGAGCTTGTTGAACCGATACAAGAAAGCTGCATA TGGCGACAGACAAGAGGCGCAATCAGTGAATTCTCGAGTGCTGGAAGTGCAGTTGAACCTTCAGAAAAGgttatttaagagaattgcattcccgaattgt atggtttaaatccaggtagctcagaaattttgttttcataacttgcagATTGGAGTTTCACAACAATGGTATGATGAATTAGACAGCCTCGCCAAAGAAA TAGCCAACCCTGAAGCAGCTGAGGAAGAGGAAGAAGAAGATGTTAACCCCTCTGAGGTTGACAGAGAAGAAGATGGACGTATCCACATTGATTGTCCTGT CAAAACAAGTCCTGGCTCAAGTGAGgtacgcctaaatctcctctcaagtctcttttatgtacagaagccaaactttactattagaaaaaagtataacttt gtcgactccggtttgtgcagCTTATTGTTTATGCAGCTTTGTATTTAAGACTAGCGAGAAACGAAGAGACAGAAAGTGCGACCCAGGAAGAACTGGCGAG AAAAATAGCAAAGATTTTAAAGCCAGTACGGAACATTACAACTATGAAGGAAGATTTGTTTGTGAATTTGTTGTCCAAGTCAAAGAGAGAATTGAGAGAC ATTGTCTTCATAAAGCCGATGCATGTGCGGATAAGGTTAGACTCGAAGGATCATCCAAAAGCCGATAACTCAAGAGACGTAATCTTGACTGACTCCTCTG TTGAGGTTGATGTCTCTCTCTGAcaacgaataacgatgcttttgcagtccattctttctcaaaggtaccaaatggctactctaattctttttgaggtggt aaaaatgagctcaataagacttgtataagtagtttatgacattatattaacgatggtccaagtttcatttggatttctatatttgagtgtttcttctatt tttggttaaaaattagaaaatatcaatgaaattagcaaatttttgggtgccattagtaaataacaaaaaagagtgaaaataagaatatttggaaaaatga agacacgatcactagaaaaaacagctgtcaagctctttaatttttcttttaaaaaccaaacagtttcaaactgaaatccaaactgatttttgaaatatga ggaacaacgaaattttgaacatatatagcatgttattgttatggtcctaataatgactgatttgcttgaagaacttatttgttactattccaacttatta cata
Border_1 (46250_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGGGGCAATTTGTTTAAATAGTTTTTTTA
CCTTTTGTTAATGACTAAAAGACTCTCATCGTCACGCTTCAGTATATGCCATGGAAACAAAAGAGAGCGTGCATCAAATTCTTCTGATTTGGTATCAGCA
TCAACTGTTGTATCGTCATCTTTTCCAAGACCCATTTTCTCCATTATCCAAGACCATAAGCCACCAGTTTTCTTAATAACCTTTGGATATACTGTTTCCA
GGACCCGGCTATTTATATTTGCTCTTCTAATGGCGTGATTCTTAGCCCAAAGAATGGGGAAAAGGAAGGAAACAAAGAGGAAAAACAATCTTAACATGAA
AACATTCAATGGCACAACCAGTAATCATAATTGTGTATCTTCTTCTAGGAGTCATACCTCAGAATCTACAATGTAAAGACAATCCTCCGCTTCGTCGTAA
AGGGTCCCTGTAGGACGTAACATCTTTGCAGATTCAAAATCTCCATCCTCAAAACCTGGGAAACAACCAATCTGAAATAAAAACATTGTTTTGAACTTTA
GGGTTGTTAAACAATGAGCTTCAAATGCACTTTTCTCTCTACGAATGCCCTTCTAAGGGATTTCAGAAAAGAAAGTCAATAAAGATTATAATTCCCCAAA
TGTGATTCAGTTCACTTACACTGTCTACAATCTTCCCACTGCTTTCGAAAATA
| Start of BLAST Alignment: | NT 2321 / Intron 10 of 13 |
| First 15 bp Perfect Match: | NT 2152 / Intron 9 of 13 |
BLAST Details: Query Sequence: 46250_LBD Length: (853 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g07060 68416.t00757 expressed protein ; expression sup... 3375 2.5e-148 1 At2g24690 68415.t02754 transcriptional factor B3 family p... 204 0.67 1 At1g65590 68414.t06818 glycosyl hydrolase family 20 prote... 202 0.76 1 At2g24520 68415.t02737 ATPase, plasma membrane-type, puta... 199 0.86 1 >At3g07060 68416.t00757 expressed protein ; expression supported by MPSS Length = 3920 Minus Strand HSPs: Score = 3375 (512.4 bits), Expect = 2.5e-148, P = 2.5e-148 Identities = 763/849 (89%), Positives = 763/849 (89%), Strand = Minus / Plus Query: 853 TATTTTCGAAAGCAGTGGGAAGATTGTAGACAGTGTAAGTGAACTGAATCACATTTGGGG 794 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1483 TATTTTCGAAAACAGTGGGAAGATTGTAGACAGTGTAAGTGAACTGAATCACATTTGGGG 1542 Query: 793 AATTATAATCTTTATTGACTTTCTTTTCTGAAATCCCTTAGAAGGGCATTCGTAGAGAGA 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1543 AATTATAATCTTTATTGACTTTCTTTTCTGAAATCCCTTAGAAGGGCATTCGTAGAGAGA 1602 Query: 733 AAAGTGCATTTGAAGCTCATTGTTTAACAACCCTAAAGTTCAAAACAATGTTTTTATTTC 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1603 AAAGTGCATTTGAAGCTCATTGTTTAACAACCCTAAAGTTCAAAACAATGTTTTTATTTC 1662 Query: 673 AGATTGGTTGTTTCCCAGGTTTTGAGGATGGAGATTTTGAATCTGCAAAGATGTTACGTC 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1663 AGATTGGTTGTTTCCCAGGTTTTGAGGATGGAGATTTTGAATCTGCAAAGATGTTACGTC 1722 Query: 613 CTACAGGGACCCTTTACGACGAAGCGGAGGATTGTCTTTACATTGTAGATTCTGAGGTAT 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1723 CTACAGGGACCCTTTACGACGAAGCGGAGGATTGTCTTTACATTGTAGATTCTGAGGTAT 1782 Query: 553 GACTCCTAGAAGAAGATACACAATTATGATTACTGGTTGTGCCATTGAATGTTTTCATGT 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1783 GACTCCTAGAAGAAGATACACAATTATGATTACTGGTTGTGCCATTGAATGTTTTCATGT 1842 Query: 493 TAAGATTGTTTTTCCTCTTTGTTTCCTTCCTTTTCCCCATTCTTTGGGCTAAGAATCACG 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1843 TAAGATTGTTTTTCCTCTTTGTTTCCTTCCTTTTCCCCATTCTTTGGGCTAAGAATCACG 1902 Query: 433 CCATTAGAAGAGCAAATATAAATAGCCGGGTCCTGGAAACAGTATATCCAAAGGTTATTA 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1903 CCATTAGAAGAGCAAATATAAATAGCCGGGTCCTGGAAACAGTATATCCAAAGGTTATTA 1962 Query: 373 AGAAAACTGGTGGCTTATGGTCTTGGATAATGGAGAAAATGGGTCTTGGAAAAGATGACG 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1963 AGAAAACTGGTGGCTTATGGTCTTGGATAATGGAGAAAATGGGTCTTGGAAAAGATGACG 2022 Query: 313 ATACAACAGTTGATGCTGATACCAAATCAGAAGAATTTGATGCACGCTCTCTTTTGTTTC 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2023 ATACAACAGTTGATGCTGATACCAAATCAGAAGAATTTGATGCACGCTCTCTTTTGTTTC 2082 Query: 253 CATGGCATATACTGAAGCGTGACGATGAGAGTCTTTTAGTCATTAACAAAAGGTAAAAAA 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2083 CATGGCATATACTGAAGCGTGACGATGAGAGTCTTTTAGTCATTAACAAAAGGTAAAAAA 2142 Query: 193 ACTATTTAAACAAATTGCCCCTT-AGACAACTTAATAACACATTGCGGACGTTTTTAATG 135 |||||||||| ||||| ||| | | | | | || | | | | | |||| | Sbjct: 2143 ACTATTTAAAGGGATTGCTTCTTTATAGTAGTGA-TAGCTCGGT-CT--CTTTTTCCTTC 2198 Query: 134 TACTGAATTAACGCCGAA-TT-GAATTCGATTTGGTGTATCGAGATTGGTTATGAAATTC 77 | || | | || || | | | | | ||| | || | || | | | ||| Sbjct: 2199 TTTTGC-TGCCCCTTTAAGTTCGTAACCAAATAGGTTTCTC-ATATCTTTCA-GCTTTTC 2255 Query: 76 AGATGCTAGTG-TAATGTATTGGTAATTTGGGA-AGATATAATAGGAAGC--AAGGCTAT 21 || | || | |||| ||| | || ||| |||| || | | | |||| || Sbjct: 2256 -GAAGTTATGGATAATAAATTT-TGCTTCAGGAGAGATCGAAGAAGTTGTGGAAGGTTAC 2313 Query: 20 TTATCCATT 12 ||| ||| Sbjct: 2314 ATATGAATT 2322 >At2g24690 68415.t02754 transcriptional factor B3 family protein low similarity to reproductive meristem protein 1 [Arabidopsis thaliana] GI:13604227; contains Pfam profile PF02362: B3 DNA binding domain Length = 3512 Plus Strand HSPs: Score = 204 (36.7 bits), Expect = 1.1, P = 0.67 Identities = 216/378 (57%), Positives = 216/378 (57%), Strand = Plus / Plus
Border_2 (46250_RBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGTTTGACGCTTTTTCCTTCTTTTGCTGCCCCTWTAAGTTCGTA:ACCAAATAGGTTTCTCATATCTTTCAGCT
TTTCGAAGTTATGGATAATAAATTTTGCTTCAGGAGAGATCGAAGAAGTTGTGGAAGGTTACATATGAATTGAGATCTTCTTTTACCGTTTTGTATTATT
TCGTTTGTTGACTCATTGCATCTAACAGATATTTATCAACATTTTAAGGGTTTTCGAAGATAATTGAGATCTGCGGTCAATCAATCACAGAGAAGCTATC
AGTGTTGGAACATATGCCTTCTAACTGGTTGCAACAGCAAACTGCGGCTATCGCCTCATTTAAGGAGCAGCCAAGTGCTTCCCTTTTGTCTTCTTTTACT
AAACTTGGAGACGACATTGTCATGACAGATATAGGTAAACGACATCTACGCAACTTTGTTTACATCTTTTTCATCTCTATGCATCAACTAACTCATTTTG
CCTTTGTACGTTAAGCTTGTCAGAGGGTGTTGAAGCTAAATAGAGATTCTGGAGCATGCTCTAGCATTCAATTCTCAAACAGTGGGATCCTTGGGTTGCC
CTATTGGTTGTTCATTCCACTGGAGAGAGTTTTTAATCTGTT
| Start of BLAST Alignment: | NT 2183 / Intron 9 of 13 |
| First 15 bp Perfect Match: | NT 2187 / Intron 9 of 13 |
BLAST Details: Query Sequence: 46250_RBU Length: (841 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g07060 68416.t00757 expressed protein ; expression sup... 3028 1.2e-132 1 At5g11950 68418.t01275 expressed protein contains Pfam pr... 211 0.38 1 At4g19120 68417.t02657 early-responsive to dehydration st... 192 0.98 1 At1g58561 68414.t06095 copia-like retrotransposon family ... 185 0.9998 1 >At3g07060 68416.t00757 expressed protein ; expression supported by MPSS Length = 3920 Plus Strand HSPs: Score = 3028 (460.4 bits), Expect = 1.2e-132, P = 1.2e-132 Identities = 607/610 (99%), Positives = 608/610 (99%), Strand = Plus / Plus Query: 232 GACGCTTTTTCCTTCTTTTGCTGCCCCTWTAAGTTCGTAACCAAATAGGTTTCTCATATC 291 | | ||||||||||||||||||||||||+||||||||||||||||||||||||||||||| Sbjct: 2184 GTCTCTTTTTCCTTCTTTTGCTGCCCCTTTAAGTTCGTAACCAAATAGGTTTCTCATATC 2243 Query: 292 TTTCAGCTTTTCGAAGTTATGGATAATAAATTTTGCTTCAGGAGAGATCGAAGAAGTTGT 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2244 TTTCAGCTTTTCGAAGTTATGGATAATAAATTTTGCTTCAGGAGAGATCGAAGAAGTTGT 2303 Query: 352 GGAAGGTTACATATGAATTGAGATCTTCTTTTACCGTTTTGTATTATTTCGTTTGTTGAC 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2304 GGAAGGTTACATATGAATTGAGATCTTCTTTTACCGTTTTGTATTATTTCGTTTGTTGAC 2363 Query: 412 TCATTGCATCTAACAGATATTTATCAACATTTTAAGGGTTTTCGAAGATAATTGAGATCT 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2364 TCATTGCATCTAACAGATATTTATCAACATTTTAAGGGTTTTCGAAGATAATTGAGATCT 2423 Query: 472 GCGGTCAATCAATCACAGAGAAGCTATCAGTGTTGGAACATATGCCTTCTAACTGGTTGC 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2424 GCGGTCAATCAATCACAGAGAAGCTATCAGTGTTGGAACATATGCCTTCTAACTGGTTGC 2483 Query: 532 AACAGCAAACTGCGGCTATCGCCTCATTTAAGGAGCAGCCAAGTGCTTCCCTTTTGTCTT 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2484 AACAGCAAACTGCGGCTATCGCCTCATTTAAGGAGCAGCCAAGTGCTTCCCTTTTGTCTT 2543 Query: 592 CTTTTACTAAACTTGGAGACGACATTGTCATGACAGATATAGGTAAACGACATCTACGCA 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2544 CTTTTACTAAACTTGGAGACGACATTGTCATGACAGATATAGGTAAACGACATCTACGCA 2603 Query: 652 ACTTTGTTTACATCTTTTTCATCTCTATGCATCAACTAACTCATTTTGCCTTTGTACGTT 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2604 ACTTTGTTTACATCTTTTTCATCTCTATGCATCAACTAACTCATTTTGCCTTTGTACGTT 2663 Query: 712 AAGCTTGTCAGAGGGTGTTGAAGCTAAATAGAGATTCTGGAGCATGCTCTAGCATTCAAT 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2664 AAGCTTGTCAGAGGGTGTTGAAGCTAAATAGAGATTCTGGAGCATGCTCTAGCATTCAAT 2723 Query: 772 TCTCAAACAGTGGGATCCTTGGGTTGCCCTATTGGTTGTTCATTCCACTGGAGAGAGTTT 831 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2724 TCTCAAACAGTGGGATCCTTGGGTTGCCCTATTGGTTGTTCATTCCACTGGAGAGAGTTT 2783 Query: 832 TTAATCTGTT 841 |||||||||| Sbjct: 2784 TTAATCTGTT 2793 >At5g11950 68418.t01275 expressed protein contains Pfam profile PF03641: decarboxylase family protein Length = 2061 Plus Strand HSPs: Score = 211 (37.7 bits), Expect = 0.47, P = 0.38 Identities = 321/572 (56%), Positives = 321/572 (56%), Strand = Plus / Plus