At4g21710 SYNGENTA 47489
Genomic Sequence (from TAIR)
ACGGCGGCGTCCATTGCTGCGGTATCATctctctctcccttcctccgccttcactctccgtctctctctctcttcttccgaaaatatcgctgacgccaca aaaatgtagccggagacttttctttatatagtaagggtgtttccgtcatttaacaatccaagctctctaacaaccaaaccgatcctttttataatcccat ttaatcaaaccggttattgatacaaaccggttatttccataaacttaagccgacttctctctctcgagcctttataaactcacaatctcacaaagccgtc tcattctctgcgtcctgtctctctct►ttgtctccgagagctcgagtagtgaagt►ttgctgtgctctaatcttcagagagtgagaataaATGGAGTACA ACGAATACGAACCTGAACCTCAATATGTAGAAGACGATGACGATGAGGAGATTACCCAGGAGGACGCGTGGGCTGTTATATCTGCTTATTTCGAAGAGAA AGGTCTCGTTCGTCAACAGCTGGATTCGTTTGATGAGTTTATTCAAAATACTATGCAAGAAATCGTTGATGAGTCTGCTGATATCGAGATCCGACCTGAA TCTCAGCATAATCCTGGCCATCAGTCCGATTTTGCGGAGgttgtttcctcg◄tttttgtttttttctagggtttctatgggaattcgaaattatgtgcgg gtttatcgtgtttgtggcggttttaaagtgtttcgatttgagcttctaccgtttgggtgcgattagggtttacctgaatcttattgatgtcccgagattg tcttgttattcaatgcttgagctatatgc◄tgttcaagagtcaaaaaatgattttgactattgatgtccggatattgactttgagctggtaatcttatta atgtcccgagattatctttgagttaatgcttgagctcatctctttcgaggaggatttatagtattggttgaaactcaaatcagttttggcactataaaaa tgagtttggtatctttttttgctgtccctttggtctgttttcctgcagacagtctattgttagcccttatctgagaagcttatctcaatgatttcccatg attatctttgtattcgatgcttgagctcttcgcttttttgaggtgtattttcagtggttttgaatattggttaaagcttaaatcagtttttaagttttgt tgcaattagggtctgcctttgtcgagtagctaagctcattgattttccgagattatctttccatttaatgcttgagctcttcgcttttttcaaagtgtcc tttcagtggtctttattatcggttgaagctcaaatcatttttgactttgtgtgagctgagatatagctgttttgctatctgtttttctgtatgtctgata tagctgttttcctgcagACAATCTACAAGATTAGCTTTGGACAGATTTATCTGAGTAAACCTATGATGACAGAGTCTGATGGAGAGACTGCCACCCTGTT CCCTAAGGCTGCAAGGTTGAGAAATCTCACATACTCTGCGCCTTTGTATGTCGATGTTACTAAGAGAGTTATTAAGAAAGGGCATGATGGTGAAGAAGTT ACGGAGACACAGGATTTTACTAAAGTTTTCATTGGAAAGgtgtccgaactcagttcattgtgtcacatttatttaggtgtttccatgtactctactgttc tgatagtagaaatgttttcttcttgtttgattatttgctagGTTCCCATCATGCTCCGGTCTAGTTACTGTACCTTGTTTCAGAACTCGGAGAAAGACCT GACAGAGCTTGGAGAATGTCCTTATGATCAGGGTGGATACTTCATTATTAATGGCAGTGAAAAGGTTCTGATTGCTCAGGAGAAGATGAGTACGAATCAT GTTTATGTGTTCAAGAAAAGGCAGCCAAATAAGTATGCTTATGTTGGTGAAGTCCGTTCTATGGCTGAAAACCAAAATAGGCCTCCAAGCACAATGTTTG TGCGTATGCTTGCTCGTGCTAGTGCAAAAGGGgtaagagaaagctaattagtcttaactctactatatccttcctcgaaatttattctttaaattctaga taatggtaaataaattacattctatgttgcaaatggatgcagGGTTCATCTGGACAGTATATTCGATGTACTCTTCCATACATCAGAACAGAAATTCCTA TTATCATAGTATTTCGTGCACTGGGATTTGTTGCCGATAAGGACATATTGGAACACATCTGCTATGATTTTGCCGATACCCAGATGATGGAGTTGCTCAG GCCTTCCTTGGAAGAAGCTTTCGTTATTCAAAATCAGCTGgtatccacttttttttcacttggttaatgacattttattatgcttgaggaattgatcttg caatcacttgataactttcatattacttcagGTTGCACTTGACTATATTGGAAAACGTGGTGCAACTGTTGGTGTAACCAAGGAAAAAAGGATAAAgtat gtgataatctaaaccaattaagttggacattatgatctaagatgtcaactattgagatgttcacactggaggtttgcgattgcaatattatcattgcagG TATGCTAGAGATATCCTTCAGAAAGAAATGCTTCCTCATGTAGGAATTGGGGAGCATTGCGAGACAAAGAAAGCTTACTATTTTGGgtaggtatttaact cacttgtaatgtttatagacttaacatgtttctgtgttgctcatattatgctatgatccgtagGTATATCATACACCGGCTGCTGCTTTGTGCACTTGGC CGAAGGCCAGAAGATGATAGGGATCATTATGGTAACAAAAGGCTGGATCTTGCTGGTCCTTTACTTGGAGGGCTATTTAGAATGgtttgttcccggcaca caattatacactcttggggattgttgagtatcagtgttttttttatctcttactgacctaacatcttctctacatgcagCTTTTCCGAAAGTTAACAAGG GATGTGAGATCTTATGTTCAAAAGgtatcttacatagttactctttctcgagccaaagactttagtattaagttgttattctgtgtttggaagtctgatt catgtttctttgacagTGCGTTGACAATGGCAAAGAAGTCAATCTTCAATTTGCCATTAAGGCTAAAACAATTACCTCTGGCCTGAAATATTCTCTTGCT ACTGGGAACTGGGGCCAGGCAAACGCTGCTGGCACAAGAGCTGGAGTCTCTCAGgttaggataattctatgttaattatgtttttgagttccaataattt cttgatgtatgttatcgggtttactgttttggcctattataattcattgcatgatttatatggctctaaagacttaactaacaacagGTTCTTAACCGGT TGACATATGCTTCGACTTTGTCACATCTGAGGCGTCTCAATTCTCCAATAGGACGTGAAGgtaaagcctcgttcttttcctgcacttctattttgtctct gtgtaactgttcgtacagttggtgtattttagtcatggttctctttattatccacatccttgcaatttagattggcttgtacttttgtttatcccacttg aatctaatcaagtctgatatgccagGAAAATTGGCAAAACCAAGACAACTGCACAACTCACAGTGGGGAATGATGTGCCCTGCTGAAACACCTGAAGGAC AGgtaaaattgttatatttataaaataagggtgtttcggattttatagttccattgctcattgtggctttgctgtaccagGCTTGTGGTCTAGTGAAAAA CTTGGCTCTCATGGTCTACATAACAGTTGGGTCAGCTGCTTATCCTATATTGGAATTTTTGGAAGAATGGGGTACTGAGAATTTTGAGgtctgtagcatt tcacattcaatttcttacccaacatctgcctccttggttcttgtggtttcctgaaggtcttaacttgaatatagGAAATATCTCCATCTGTTATACCCCA AGCCACAAAAATCTTTGTCAATGGAATGTGGGTTGGAGTTCATAGAGATCCTGACATGTTGGTGAAAACGTTGAGACGTTTGAGACGAAGGgtaagcatg cagtttctttcacgtttccatatatgctagtgaaaatattgcaactttatgcagaagtgacatattactttttcctcttgcagGTTGATGTCAACACTGA AGTTGGTGTAGTTAGAGATATCCGTCTTAAAGAGCTCCGGATATACACTGATTATGGACGTTGTAGCCGTCCGTTGTTTATTGTAGATAATCAGAAGCTC TTAATAAAGAAGAGAGATATCTATGCTCTGCAACAAAGGgtaaaattctaatttttacctgttatcaaagtatcttttgttataaattccattgtaccaa tatttgttttcataacccagGAAAGTGCAGAAGAAGATGGTTGGCATCATCTGGTTGCTAAGGGCTTTATAGAATACATAGACACAGAAGAAGAGGAAAC GACCATGATTTCCATGACTATCAGTgtgagtaatgaaatgaagatgtgattaaatgagtttgtggtgcactaatttctgcagaaatcttactcttatgtt tgttgtagGATCTGGTTCAAGCTAGACTCCGCCCAGAAGAGGCTTATACTGAAAACTACACACATTGTGAGATTCACCCATCTCTGATATTGGGGGTCTG TGCTTCAATCATACCATTTCCTGACCATAATCAGgtacctctgtctaaatgacttttctatcagaagcgatttcattatgtaaattcagtttcatgctaa ctaaccctttactttttgatgtattagTCACCTCGTAATACATATCAATCTGCCATGGGGAAGCAAGCAATGGGAATTTATGTCACCAACTACCAATTTC GCATGgtatgttctaggctcttaatttgtggtctttcttgtcagctcttgttacatcactcaatattttaaagaaattattattgttctgtcaaccagGA TACGTTAGCTTATGTTCTCTATTATCCACAAAAGCCTTTGGTTACTACAAGAGCTATGGAGCATCTTCACTTTAGACAACTTCCAGCAGGAATTgtaagt tatttttgctagaagtttttcagaattcagcattgctcgtgtatcaaatctctcaaatgtttttttttcttcttcttgtgcagAATGCTATTGTTGCCAT TTCTTGCTATTCTGGATATAATCAAGAAGATTCTGTCATCATGAATCAGTCTTCAATAGATCGTGGTTTCTTTCGATCCTTGTTCTTTCGGTCTTACAGg tgagtatgctatacttttggacgtttgccttcggtctttccatttatttatactgcaatcacgtttgctgacagAGATGAGGAGAAAAAAATGGGGACGC TTGTCAAAGAAGACTTTGGGCGCCCAGACAGAGGAAGTACAATGgtaagaaagtaattgacacatggttcatacttcagtggtgctttttgtaagtgaag tttaacacttgggtttctgctgcagGGTATGCGACATGGTTCTTATGATAAACTGGATGATGATGGTCTTGCGCCTCCTgtaagtttataatttattgtt ccttaattatttattatctgatatgattaggtgactaatgttagaaagcatatcatacaatcttttatttttggtatagGGTACTAGAGTTTCAGGTGAA GATGTTATCATTGGGAAAACCACTCCAATATCTCAAGATGAGGCTCAAGGACAATCATCCCGATACACTAGACGTGATCATAGTATAAGCTTGCGACATA GTGAAACTGGAATGGTGGATCAGgtaactttggcttttccttgcagttaagggtttagaaagtttcaggattgaaatatgaaactgatcaattcttgtaa cttcgtgtagGTGTTATTGACTACAAATGCAGATGGTTTGAGGTTTGTGAAAGTGAGGGTCAGATCCGTGCGGATTCCTCAAATTGGAGACAAATTTAGT AGTAGACACGGTCAGAAGGGAACTGTTGGCATGACCTACACGCAGGAGGATATGCCATGGACGATTGAAGGGGTCACTCCGGACATTATTGTGAATCCAC ATGCTATTCCGTCTCGAATGACAATTGGACAGCTAATTGAGTGCATCATGGGAAAAGTGGCAGCTCACATGGGAAAAGAAGGAGATGCTACTCCCTTTAC AGATGTCACGgtaacttgcattttccttagctgcttagttagcattgggcttggtattattagttttgaccaatgttgtgtcgttagGTGGATAATATAA GCAAAGCCCTTCATAAGTGTGGGTACCAAATGCGTGGATTTGAGAGAATGTACAATGGTCACACGGGCAGACCACTCACAGCTATGATATTCCTTGGACC AACATATTACCAAAGATTGAAGCATATGGTTGATGACAAGATTCACTCGCGTGGACGAGGTCCGGTGCAAATCTTAACAAGACAACCAGCTGAAGGGCGA TCACGTGATGGTGGTCTCCGTTTTGGAGAAATGGAGCGCGATTGCATGATTGCACATGGTGCTGCTCACTTTTTGAAAGAGAGGCTGTTTGATCAGAGTG ATGCGTATAGGGTACATGTGTGTGAAGTCTGCGGGCTCATTGCCATTGCAAATCTGAAGAAGAATTCTTTTGAATGCAGAGGTTGCAAGAACAAAACAGA TATTGTTCAGgtaaacataaactgttgtgcaagtggttcatattcatctttatctctttcatgctcatttgtctgatgtcatttcatctaaatattctca gGTATACATTCCATATGCTTGCAAATTACTCTTTCAAGAGCTTATGTCAATGGCTATTGCACCAAGGATGCTCACTAAACACCTGAAATCGGCTAAAGGC AGACAGTGAggagcttgcaatctgattttgtagaaacttgaactttccttctctcttggtcatagctttgtaacaatactaaatttacaaatttgtgtaa tatttctgtactaattcttaaagctagaaaggtaccttataagatatatttatggattctttagtaaatttgctgctcctaattattctcatggggcatc cgtatggggattcactttgtttccttctgctttcatcatcattgtgccttatcgatgagctcaacattgcgaaatccattcaatagctgtttcaaacatt aatgatatcttttctatggttttctctattccttcaatattagtagctgcagcatatgcactgagacgaatactaagagtaaattggtcaaaagagactc cattcttctccatttcaagcatcagatcatctaattttccatgcacattcatctgattatacatattcatcatacgattgtaacaacgtgtgtccatgga aacacacgcttccttcatggcttccacaagcttctcagcttacgatattagcagctaagaagactagaaaagaccgcaataatctttgggaatgttatca aaga
Border_1 (47489_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTTAAGCGTCAATGTGTTATTGCTGTGCTCTA
ATCTTCAGAGAGTGAGAATAAATGGAGTACAACGAATACGGAACCTGAACCTCAATATGTAGAAGACGATGACGATGAGGAGATTACCCAGGAGGACGCG
TGGGCTGTTATATCTGCTTATTTCGAAGAGAAAGGTCTCAGTTCGTCAACAGCTGGATTCGTTTGATGAGTTTATTCAAAATACTATGCAAGAAATCGTT
GATGAGTCTGCTGATATCGAGATCCGACCTGAATCTCAGCATAATCCTGGCCATCAGTCCGATTTTGCGGAGGTTGTTTCCTCGTTTTTGTTTTTTTCTA
GGGTTTCTATGGGAATTCGAAATTATGTGCGGGTTTATCGNGTTTGTGGCGGTTTTAAAGTGTTTCGATTTGAGCTTCTACCGTTTGGGTGCGATTAGGG
TTTACCTGAATCTTATTGATGTCCCGAGATTGTCTTGNTATTCAATGCTTGAGCTATATGCTGTTCAAGAGTCAAAAAATGATTTTGACTATTGATGTCC
GGATATTGACTTTGAGCTGGNAATCTTATTAATGTCCCGAGATTATCTTTGAGTTAATGCTTGAGCTCATCTCTTTCGAGGAGGATTTATAGTATTGGTT
GAAACTCAAATCAGTTTTGGCACTATAAAAATGAGTTTGGTATCTTTTTTTGCTGACCCTTTGGTCTGTTNTCCTGCA
| Start of BLAST Alignment: | NT < 62 / Upstream |
| First 15 bp Perfect Match: | NT < 34 / Upstream |
BLAST Details: Query Sequence: 47489_LB2 Border #1 Length: (878 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F17L22 67137 3299 7.7e-143 1 K5F14 67857 211 0.69 1 MBG8 67858 211 0.70 1 F17L22 67137 Length = 107,702 Minus Strand HSPs: Score = 3299 (501.0 bits), Expect = 7.7e-143, P = 7.7e-143 Identities = 687/719 (95%), Positives = 687/719 (95%), Strand = Minus / Plus Query: 878 TGCAGGANAACAGACCAAAGGGTCAGCAAAAAAAGATACCAAACTCATTTTTATAGTGCC 819 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 73355 TGCAGGAAAACAGACCAAAGGGACAGCAAAAAAAGATACCAAACTCATTTTTATAGTGCC 73414 Query: 818 AAAACTGATTTGAGTTTCAACCAATACTATAAATCCTCCTCGAAAGAGATGAGCTCAAGC 759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73415 AAAACTGATTTGAGTTTCAACCAATACTATAAATCCTCCTCGAAAGAGATGAGCTCAAGC 73474 Query: 758 ATTAACTCAAAGATAATCTCGGGACATTAATAAGATTNCCAGCTCAAAGTCAATATCCGG 699 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 73475 ATTAACTCAAAGATAATCTCGGGACATTAATAAGATTACCAGCTCAAAGTCAATATCCGG 73534 Query: 698 ACATCAATAGTCAAAATCATTTTTTGACTCTTGAACAGCATATAGCTCAAGCATTGAATA 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73535 ACATCAATAGTCAAAATCATTTTTTGACTCTTGAACAGCATATAGCTCAAGCATTGAATA 73594 Query: 638 NCAAGACAATCTCGGGACATCAATAAGATTCAGGTAAACCCTAATCGCACCCAAACGGTA 579 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73595 ACAAGACAATCTCGGGACATCAATAAGATTCAGGTAAACCCTAATCGCACCCAAACGGTA 73654 Query: 578 GAAGCTCAAATCGAAACACTTTAAAACCGCCACAAACNCGATAAACCCGCACATAATTTC 519 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 73655 GAAGCTCAAATCGAAACACTTTAAAACCGCCACAAACACGATAAACCCGCACATAATTTC 73714 Query: 518 GAATTCCCATAGAAACCCTAGNNNNNNNNNNNNNCGAGGAAACAACCTCCGCAAAATCGG 459 ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 73715 GAATTCCCATAGAAACCCTAGAAAAAAACAAAAACGAGGAAACAACCTCCGCAAAATCGG 73774 Query: 458 ACTGATGGCCAGGATTATGCTGAGATTCAGGTCGGATCTCGATATCAGCAGACTCATCAA 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73775 ACTGATGGCCAGGATTATGCTGAGATTCAGGTCGGATCTCGATATCAGCAGACTCATCAA 73834 Query: 398 CGATTTCTTGCATAGTATTTTGAATAAACTCATCAAACGAATCCAGCTGTTGACGAACTG 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 73835 CGATTTCTTGCATAGTATTTTGAATAAACTCATCAAACGAATCCAGCTGTTGACGAAC-G 73893 Query: 338 AGACCTTTCTCTTCGAAATAAGCAGATATAACAGCCCACGCGTCCTCCTGGGTAATCTCC 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73894 AGACCTTTCTCTTCGAAATAAGCAGATATAACAGCCCACGCGTCCTCCTGGGTAATCTCC 73953 Query: 278 TCATCGTCATCGTCTTCTACATATTGAGGTTCAGGTTCCGTATTCGTTGTACTCCATTTA 219 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 73954 TCATCGTCATCGTCTTCTACATATTGAGGTTCAGGTTC-GTATTCGTTGTACTCCATTTA 74012 Query: 218 TTCTCACTCTCTGAAGATTAGAGCACAGCAATAA-CAC-ATT-GA-CGCTTA-AGACAA 165 ||||||||||||||||||||||||||||||| ||| | | || | || |||||| Sbjct: 74013 TTCTCACTCTCTGAAGATTAGAGCACAGCAAACTTCACTACTCGAGCTCTCGGAGACAA 74071 Score = 224 (39.7 bits), Expect = 0.29, P = 0.25 Identities = 102/155 (65%), Positives = 102/155 (65%), Strand = Minus / Plus Query: 776 AAAGAGATGAGCTCAAGCATTAACTC-AAAGATAATCTCGGGACATTAATAAGATTNCCA 718 |||| || ||||||||||||||| | |||||||||||||| | || ||| || || | Sbjct: 73115 AAAGCGAAGAGCTCAAGCATTAAATGGAAAGATAATCTCGGAAAATCAATGAGCTTAGCT 73174 Query: 717 GCTC-A--AAGTCAATATCCGGA---CATCAATAGTCAAAATCATTTTTTGACTCTTGAA 664 ||| | ||| || | || | || ||| | | |||| | | ||| | ||| || Sbjct: 73175 ACTCGACAAAGGCAG-ACCCTAATTGCAACAAAACTTAAAAAC-TGATTTAAG-CTTTAA 73231 Query: 663 CAGCATATAGCTCAAGCATTGAATAN-CAAGACAA 630 | |||| | || || |||| | || ||| Sbjct: 73232 CCA-ATATT-CAAAACCACTGAAAATACACCTCAA 73264 Score = 197 (35.6 bits), Expect = 5.4, P = 0.995 Identities = 67/96 (69%), Positives = 67/96 (69%), Strand = Minus / Plus Query: 803 TTCAACCAATACTATAAATCCTCCTCGAAAGAG--ATGAGCTCAAGCATTAACT-CAAAG 747 ||||| | ||| |||| | |||| ||| || | |||||||||||| | | ||||| Sbjct: 73238 TTCAAA-ACCACTGAAAATACACCTCAAAAAAGCGAAGAGCTCAAGCATCGAATACAAAG 73296 Query: 746 ATAATCTCGGGACATTAATAAGATTNCCAGCTCAAA 711 |||||| |||| || | | |||| | |||| | Sbjct: 73297 ATAATCATGGGAAATCATTGAGATAAGCTTCTCAGA 73332 K5F14 67857 Length = 41,178 Plus Strand HSPs: Score = 211 (37.7 bits), Expect = 1.2, P = 0.69 Identities = 187/332 (56%), Positives = 187/332 (56%), Strand = Plus / Plus
Border_2 (47489_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCNCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACGCACAATAT
ATTGTCAGGANATATTGGCGGATATGCCTNANAGCANAGANNGNCNNTTANAATCGTCGNATANNTAAGGANGACNAGANNAGGNTNANNCGNNCGGCCT
TNGNGAGGTNNNNANGNCATACTCNCGAGGNCTTCGCACTCGCGNATCTGCTTAAGNCATCGAACTNACNTTCACATAGGTNTCNNNCATCNCTGACGAG
TATNGCAAANNCTNANNNTNCCNNNACTGGTGNNGATANCNGACAGGCATTTTAAGANNNCNGGNGNCACCANCTGGCGGCTNATAAGGGCGNTTTCCTN
TGNNNAACCCTAGAAAAAAACAAAAACGAGGAAACAACCTCCGCAAAATCGGACTGATGGCCAGGATTATGCTGAGATTCAGGTGTNNNCCNTATATCAG
CAGACTCATCAACGATTTCTTGCATAGTATTTTGAATAAACTCATCAAACGAATCCAGCTGTTGACGAACGA
| Start of BLAST Alignment: | NT 438 / Intron 1 of 24 |
| First 15 bp Perfect Match: | NT 261 / Intron 1 of 24 |
BLAST Details: Query Sequence: 47489_LB1 Length: (672 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g21710 68417.t02952 DNA-directed RNA polymerase II 135... 740 1.2e-27 1 >At4g21710 68417.t02952 DNA-directed RNA polymerase II 135 kDa polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2) (RP140) identical to SP|P38420 DNA-directed RNA polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2) {Arabidopsis thaliana} Length = 6676 Minus Strand HSPs: Score = 740 (117.1 bits), Expect = 1.2e-27, P = 1.2e-27 Identities = 226/332 (68%), Positives = 226/332 (68%), Strand = Minus / Plus Query: 672 TCGTTCGTCAACAGCTGGATTCGTTTGATGAGTTTATTCAAAATACTATGCAAGAAATCG 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 TCGTTCGTCAACAGCTGGATTCGTTTGATGAGTTTATTCAAAATACTATGCAAGAAATCG 175 Query: 612 TTGATGAGTCTGCTGATATANGGNNNACACCTGAATCTCAGCATAATCCTGGCCATCAGT 553 ||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct: 176 TTGATGAGTCTGCTGATATCGAGATCCGACCTGAATCTCAGCATAATCCTGGCCATCAGT 235 Query: 552 CCGATTTTGCGGAGGTTGTTTCCTCGNNNNNNNNNNNNNCTAGGGTTNNNCANAGGAAAN 493 |||||||||||||||||||||||||| |||||||| | |||| Sbjct: 236 CCGATTTTGCGGAGGTTGTTTCCTCGTTTTTGTTTTTTTCTAGGGTTTCT-ATGGGAATT 294 Query: 492 CGCCCTTATNAGCCGCCAGNTGGTGNCNCCNGNNNTCTTAAAATGCCTGTCNGNTATCNN 433 || |||| || | | ||| | | ||||| || | | | Sbjct: 295 CGAAATTATGTGCGGGTTTATCGTGTTTGTGGCGGTTTTAAAGTGTTTCGATTTGAGCTT 354 Query: 432 C-ACCAGTNNNGGNANNNTNAGNNTTTGCNATACTCGTCAGNGATGNNN-GANACCTATG 375 | ||| || || | || ||| | | || | | |||| || | | || Sbjct: 355 CTACC-GTTTGGGTGCGATTAGGGTTTACCTGAATCTT-ATTGATGTCCCGAGA--T-TG 409 Query: 374 TGAANGTNAGTTCGATGNCTTAAGC-AGATNC 344 | || | ||| ||| ||| ||| | || | Sbjct: 410 TCT-TGTTA-TTCAATG-CTTGAGCTATATGC 438