At3g20440 SYNGENTA 48882
Genomic Sequence (from TAIR)
aaatctgtaaaaatatgtgaatgttaaaaatttatcaaaagaaaaccatactcgtgttgaatttaattaaaagtaaataaaaaacgagaaatctcacttt caagatcacaaatccatgtagttcttatcaatcggttcgggattgaaccggtttaaattacgctcggtttggttcaaatttcaaattgagaaaaatatcc gaataccgagtgaactcgtcgtcgttctttataacgagtcgactcaaaaacctctcttatcttaaaaaaagactaaaaccctgagtgtgagtgagagtat gaacaaatcttcttcgtagcaccaacaaaaATGGTGTCCCTCTCTAATCAAACCAGATTCTCTTTCCACCCAAACAATCTTGTCGTTTCCGAGAAACGGC GCCTGGGAATCTCAGGAGTCAATTTTCCCAGGAAGATCAAGTTGAAAATCACTTGCTTCGCCGCCGAGAGACCACGCCAGGAGAAACAGAAAAAGAAGAG TCAGAGCCAGAGCACTAGCGACGCTGAGGCTGGAGTTGACCCTGTTGGGTTTCTCACCAGACTCGGAATTGCTGACAGAATCTTTGCTCAATTTCTCCGG GAAAGgtataaaaatgtatcaactttgattttgaaaaaatgggcaacaaaaaaggatcaattttgattacagctgtgtataataagcctgttcgtttttc tgtagGCATAAAGCTTTGAAAGACCTTAAAGATGAGATTTTCAAACGCCATTTCGATTTCAGAGATTTTGCTTCAGGgtatgtatcctcttggtcccagt ttctttcaagagaagattttgatcctggattagtgactgatgtgtatccaaaatgctttgtctaatgaatagccttcttttcattgtagATTTGAGTTAT TGGGGATGCATCGACATATGGAACACCGGGTTGACTTTATGGACTGGGGTCCAGgttctgtctcttgctctaatcttaaaatttcattagtcagttcatt acttacatttggttctgaaacagaatgaatgatgttcagaaacttgatatgtatgttgggaagtttgagaatactaaccaatcctaaattcagGTTCTCG TTATGGGGCTATAATCGGAGATTTCAATGGATGGTCGCCTACAGAAAATGCAGCTAGAGAGGGCCTATTTGGCCATGATGATTATGGGTATTGGTTCATT ATTCTTGAAGATAAGTTAAGAGAGGgtgaagaaccagatgaactatactttcagcagtataactatgtcgatgactatgataagggtgatagtggtgtat cagctgaagaaatcttccagaaagctaatgatgagtattgggaacctggtgaggatcggtttattaaaaaccgctttgaagttcctgccaaactatacga gcagatgtttggcccgaacagtccacaaacgttagaagagcttggagatataccagatgcagaaacgagatataaacagtggaaagaggagcataaagat gacccgccaagtaatctacctccatgcgacatcattgataaaggtcaaggaaagccatatgatatttttaatgtcgtgacatctccagaatggacaaaga aattttatgagaaagaacctccgattccatattggttagagacacgtaaaggaagaaaggcatggttgcaaaaatatattccagCTGTTCCACATGGAAG CAAGTATAGATTGTATTTCAATACTCCTGATGGACCGCTTGAACGAGTGCCTGCTTGGGCTACATATGTGCAACCAGgtatgacagcgtttggtatttct atggttaggagtagcacatgaaatttaacaaatttcataacattcataaatatatggaagcaagcattcagtttttctttcatctgatgacacatgctta gaagtatttgcacgaattgaacaaacggaaggagtttttttccattttttttactctctgcttttcatgtccagagttactagaactttgtaagcactaa attaacagtcttactgaacaacatttttcagagaagctgtaaaacctttcttgtttctatacgctactgcttgatgtttctatgcagagatgcttttaaa ataacgtttttgtatgtgtcatgttaatatttccacgataatgtatcttgtttattattaatgtattcatttttctctaaaatagAGGATGAAGGAAAGC AAGCTTACGCAATTCATTGGGAACCTTCTCCTGAAGCTGCATACAAGTGGAAATATTCCAAGCCAAAAGTTCCAGAGTCCTTGCGCATATACGAATGTCA TGTTGGAATCAGTGGGTCCGAGCCAAAAGTTTCAACTTTCGAAGAATTTACTAAGAAGgtacctcctaatgtattcattgtattcttacttgcaatctta ttatgcacacatctcagtttttctgtggcctatcaaacatcagGTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCT GAGCACAAGGATTATTTTACTGTTGGTTATAGGgtcagcaagctaaacttctagcacttaaactttcttttttactacttcttagtctggttatagggtc agcatagctgttattcatagtcttatgttacctccagttcttatgattatatcgtctttggctttgctgtccactgtgcatgaaaggttctgaaggtctt tgccgaatgattagtaaaaaatagacaatagtgtagaatagagagaattgatgaaaaatatggaacaagaagagaacaacttgatagaaataaagtggaa agaaacaattttgattagtgggcattgcatatgtcatttagtcctgatcaggtccttttactagttacatttgaaaaaaataacagctatggaactacac tcaagctaataaccagaattcctagtacataatatggcagattttacaaattattaaggaaactactgtcacttatctttaaaccgaatgaatggattta tgaaaattattttttacctcatttgtcataattggtatccatcaccatttcagGTTACGAACTTCTTTGCTGCCAGTAGCCGATATGGCACGCCAGATGA TTTCAAACGGTTGGTTGATGAGGCACATGgtaattatttctcgtctttcttgttttcttgatgttgtataaccatgtagtgacgaagcacatgatataca gGCCTAGGACTTCTTGTCTTTTTGGACATCGTGCATTCTTATGCAGCAGCTGATCAGATGGTTGGGCTTTCTCTCTTCGATGGTTCAAATGATTGCTATT TTCATTATGgtaatttccataatagtagttcactttttatttatttcatgagttcttgcatgaataaaagacttcttgcatgcctttattctaacgtgtt gatgtccaagtcattggtatgtaactagaaagtatgcaccataattttcgtgttacaaccaatgttgttcataatcttgtgtacgtccaaagatgacgtc aaacatgtctgacatagttgaatatgggcctgtctaaaaacacaatgttccattttcttcatcgtggaaatagGTAAAAGGGGGCATCACAAACACTGGG GCACCCGGATGTTCAAATACGGTGATTTGGATGTTCTTCATTTTCTAATATCAAATTTGAACTGgtaaaggcagctacattattaagtggtttgttaata atgtattggttgtactcactcttttggtatagtaggaaagtgttgcacactttttggttataggaatctgatgctgttgcatttggcttttgcagGTGGA TTACAGAGTATCAAGTTGATGGTTACCAATTTCACTCGCTTGCCTCGATGATTTACACGCACAATGGGTTTGCTTCATTTAACAACGATTTGGATGAgta aggcatctatgagactacacacctctttgtataattttgattacagttggtcaaactgttgacgtctttcctgttggcagCTATTGCAATCAGTATGTTG ACCGAGATGCTCTGATGTACCTCATTTTGGCCAATGAAATCCTGCACGTTCAACATCCAAATATAATAACAATTGCTGAGGATgtaagctacacatcact tttttttggtcatgcttttgtttaaagctattaaatattcatccttattgaattgctttgtcttaattgatagtattgagggggactagctactgacact gctttcatcatagaatatcactaagtctctgaagtatatttctgggcataattgcttctaaattatctctagtttttagtcttgcaagtgttggttagta gaattagtactgttactgccagttagtgaaaacttttcatgctttttccaaatatgctatatgtagataaaaagttgtgtaagagagtaacatgtaacat gtatatatatgctttctcatgtacaacacatgacggtaaccatagtgtcgactggcttgtgtaagccaatttaaactggccatacgcaggaaaagaagtt cttgacgaattatcttttacgaatgttagatgtatatcagtgggtaaaaagtttaagattcttattgacagaaaaattgcattaatttttctgtcgatga tctgaatcgttgctcgttgggtttcactatctacccacttatagaacttaacaaggtttccttttgcttttagGCAACATATTACCCTGGGTTGTGTGAG CCAGTTTCTCAAGGTGGACTTGGATTTGATTATTATGTGAATCTTTCTGCGTCAGAAATGTGGGTTTCTCTCCTCGACAATGTACCGGATAATGAATGGA GCATGAGCAAGgttatagcttttacgtttccattgttatatatggcagaacaagacttttgtcctgttgtctgatgttcagCCAGTGCTACAGATTGTCA GTACATTGGTGGCTAACAAAGAGTATGCAGACAAGATGCTCAGCTATGCCGAAAATCACAACCAAgtatctacgttgtaactttagtttttcatttctac tacacaactaaacttttatgttgcattgacattgttgtttattctacttttcctttccaccagTCCATATCAGGAGGGCGTTCATTTGCTGAAATCTTAT TCGGTGGAGTCGATAATGGTTCTCCTGGAGGAAAAGAATTGCTAGACAGGGGAATTTCACTACATAAGgtatccctttcttagtcctttacgcactactt cccgaacttagcatacctctatcctgatgagaacacaactgtagaataagatttgatattattttgatttttgcattgaaaagtgaaaatatgaaatctg gaagattgtctaattattgccctctgttgtcttttatctatattgtttcacttatattctgaaagctaacgtttcttgtcattgcttggacgaccagATG ATTAGACTGATTACTTTTACAAGTGGTGGCCGTGCATACCTCAATTTCATGGGAAATGAATTTGGACATCCTGAGgtaaatctacaaactcccactgttc taaagacatcatcttcatgtttctgattctgacgtttcatccttgtgtcagAGGGTTGAGTTTCCAACGCAGAGCAATAACTTCTCGTTTTCACTTGCTA ACCGCCGCTGGGACCTGCTGGAAAGTGGAGTGCATCATCACTTGTTTTCCTTTGACAAGgtatcagtcttaccattaccacctgtttacaaaagtgcagc ttccatatccatgattttgttagcatctctgaaaattttcttccttaaatttcctagcaatttaatactgtattagtctatgaaggcggcaaataaatgt tatcaagccgagaaagttgtcagaactcgaacttaaaaaactttactgccgatatcatatcagaagaaactaaatgcttgatttcttattgaagttttaa ttgtatatctttaaaatgtaaggactagaaaatgttccaagcatatatcctcttgtatcagaagagatgctttttagctactgatctcgttctttatttg tagGAGCTAATGGACTTGGATAAAAGCAAGGGTATCCTTTCAAGAGGTCTGCCCAGCATCCACCATGTGAATGATGCAAATATGgtaattgaatcctttt tctcttttattttccactgaaaattgattgggttcagggtctgaaaaatgagttcctggcattctttggcatgctagtgtttgtatatgcctttatatac gatattattcagctaatgcggaaaataaataaaccaactgtcttcctgcaacatttgggaattctccaaatacatttatagaattataaaataacagtgt aaacctgagcaaaatgagactacctaaagtaagcatcagaaatgaaagagtttgtacaatgagcctgcttactagtcaactaattgttctctacagGTGA TTTCTTTCTCAAGGGGTCCTTTCCTATTTATCTTTAACTTCCACCCATCAAATTCATATGAAAAGTATGATGTCGGTGTAGAGGAAGCTGGTGAATATAC Cgtaagttttttccattctctgtttagatattgcacccatcatctatcatctttaataagtgtctgtcaatgaaaccactgctttgctctccatgaaaca cagttgctaccgcgtttttactcgttgatagaacaatgaactccactataaggttgttcaatgcgtttcacctgagaatattacctggattttgcagATG ATACTGAACTCCGATGAAGTAAAGTATGGGGGTCAAGGGATTGTAACAGAAGACCACTATCTTCAACGGTCAATTAGCAAGAGgtttgtaattttagttt aatgttatagtatcctacttagcaaagatataaggatgttatctgttcatcattttgaaccgaatccacatttgtgcagAATTGATGGTCAAAGAAATTG CTTAGAGGTGTTTTTGCCTAGCCGGACTGCCCAAgtcagctctctctctctctctccttcttttgctctctctctatgctatctactgccatgagaattg attcatagatgcattcaacctgtcatatg◄ttgattcaaactccattttt►atattctcaggtttacaagttgacccggat◄cc►tccgaatatgatcct ctctctttgtatgccacatacaaacaccaagcatgtttgtctgagagGCTAGGTATGAACCCAAGGTCACTACAAGAGGTGATGTAATATTAACATGGCT CGTCCAAGCGATGATGGCAGTTAAGAAGATTATCAATCACGCCTTCACAGAGGTGCAATAAaagaacaagcagttcataaagagaatcccaggaagacca attcatctcgtggtgtagttcaagcaaacaaatgttttgtatcaaatcagctgcatcatgtaacgagaagttaacacatgaacctcttaatggtgtaggc cgactgatgttatgtagtaaatttctaggaggtgctcaagtttgtgtatttaagaaatctttggtagttggtatatatagttttgttaatgcatttctcg acaaaatcaatgctttccatttctcgacaaaacaattgctttccacaagagaagtcatccagtagcttagatatattgtttacctagttaaaaaaagtcc aagg
Border_1 (48882_LBU)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCATATGACAGGTTGAATGCATCTATGAATCAA
TTCTCATGGCAGTAGATAGCATAGAGAGAGAGCAAAAGAAGGAGAGAGAGAGAGAGAGCTGACTTGGGCAGTCCGGCTAGGCAAAAACACCTCTAAGCAA
TTTCTTTGACCATCAATTCTGCACAAATGTGGATTCGGTTCAAAATGATGAACAGATAACATCCTTATATCTTTGCTAAGTAGGATACTATAACATTAAA
CTAAAATTACAAACCTCTTGCTAATTGACCGTTGAAGATAGTGGTCTTCTGTTACAATCCCTTGACCCCCATACTTTACTTCATCGGAGTTCAGTATCAT
CTGCAAAATCCAGGTAATATTCTCAGGTGAAACGCATTGAACAACCTTATAGTGGAGTTCATTGTTCTATCAACGAGTAA
| Start of BLAST Alignment: | NT 6749 / Intron 21 of 21 |
| First 15 bp Perfect Match: | NT 6699 / Intron 21 of 21 |
BLAST Details: Query Sequence: 48882_LBU Length: (580 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g20440 68416.t02310 glycoside hydrolase family 13 prot... 1816 2.1e-76 1 At5g17130 68418.t01820 hypothetical protein 183 0.89 1 >At3g20440 68416.t02310 glycoside hydrolase family 13 protein similar to 1,4-alpha-glucan branching enzyme [Solanum tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum tuberosum} SP|P30924; contains Pfam profiles: PF00128 Alpha amylase catalytic domain, PF02922 Isoamylase N-terminal domain Length = 6927 Minus Strand HSPs: Score = 1816 (278.5 bits), Expect = 2.1e-76, P = 2.1e-76 Identities = 406/467 (86%), Positives = 406/467 (86%), Strand = Minus / Plus Query: 580 TTACTCGTTGATAGAACAATGAACTCCACTATAAGGTTGTTCAATGCGTTTCACCTGAGA 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6288 TTACTCGTTGATAGAACAATGAACTCCACTATAAGGTTGTTCAATGCGTTTCACCTGAGA 6347 Query: 520 ATATTACCTGGATTTTGCAGATGATACTGAACTCCGATGAAGTAAAGTATGGGGGTCAAG 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6348 ATATTACCTGGATTTTGCAGATGATACTGAACTCCGATGAAGTAAAGTATGGGGGTCAAG 6407 Query: 460 GGATTGTAACAGAAGACCACTATCTTCAACGGTCAATTAGCAAGAGGTTTGTAATTTTAG 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6408 GGATTGTAACAGAAGACCACTATCTTCAACGGTCAATTAGCAAGAGGTTTGTAATTTTAG 6467 Query: 400 TTTAATGTTATAGTATCCTACTTAGCAAAGATATAAGGATGTTATCTGTTCATCATTTTG 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6468 TTTAATGTTATAGTATCCTACTTAGCAAAGATATAAGGATGTTATCTGTTCATCATTTTG 6527 Query: 340 AACCGAATCCACATTTGTGCAGAATTGATGGTCAAAGAAATTGCTTAGAGGTGTTTTTGC 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6528 AACCGAATCCACATTTGTGCAGAATTGATGGTCAAAGAAATTGCTTAGAGGTGTTTTTGC 6587 Query: 280 CTAGCCGGACTGCCCAAGTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT 221 |||||||||||||||||||||| || Sbjct: 6588 CTAGCCGGACTGCCCAAGTCAGCTCTCTCTCTCTCTCTCCTTCTTTTGCTCTCTCTCTAT 6647 Query: 220 GCTATCTACTGCCATGAGAATTGATTCATAGATGCATTCAACCTGTCATATGACAACTTA 161 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 6648 GCTATCTACTGCCATGAGAATTGATTCATAGATGCATTCAACCTGTCATATGTTGA-TTC 6706 Query: 160 ATAACAC-ATTGCGGACGTTTTTAA-TGTACTGAATTAACGCCGAAT 116 | ||| | ||| | || | | | ||| | || || ||| || Sbjct: 6707 A-AACTCCATTTTT-ATATTCTCAGGTTTACA-AGTTGAC-CCGGAT 6749 >At5g17130 68418.t01820 hypothetical protein Length = 563 Minus Strand HSPs: Score = 183 (33.5 bits), Expect = 2.2, P = 0.89 Identities = 143/246 (58%), Positives = 143/246 (58%), Strand = Minus / Plus
Border_2 (48882_RBD)
AACAATTTCACACAGGAAACAGCTATGACCATGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGAT
CAGATTGTCGTTTCCCGCCTTCAGTTTATGCATGCTAGCATATGCCATGGAAACTATCAGTGTTTACGCTTTCATATGTAGTCCGAATATGATCCTCTCT
CTTTGTATGCCACATACAAACACCAAGCATGTTTGTCTGAGAGGCTAGGTATGAACCCAAGGTCACTACAAGAGGTGATGTAATATTAACATGGCTCGTC
CAAGCGATGATGGCAGTTAAGAAGATTATCAATCACGCCTTCACAGAGGTGCAATAAAAGAACAAGCAGTTCATAAAGAGAATCCCAGGAAGACCAATTC
ATCTCGTGGTGTAGT
| Start of BLAST Alignment: | NT 6719 / Intron 21 of 21 |
| First 15 bp Perfect Match: | NT 6751 / Intron 21 of 21 |
BLAST Details: Query Sequence: 48882_RBD Length: (415 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g20440 68416.t02310 glycoside hydrolase family 13 prot... 892 1.6e-34 1 At3g07400 68416.t00797 lipase class 3 family protein cont... 172 0.9995 1 >At3g20440 68416.t02310 glycoside hydrolase family 13 protein similar to 1,4-alpha-glucan branching enzyme [Solanum tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum tuberosum} SP|P30924; contains Pfam profiles: PF00128 Alpha amylase catalytic domain, PF02922 Isoamylase N-terminal domain Length = 6927 Plus Strand HSPs: Score = 892 (139.9 bits), Expect = 1.6e-34, P = 1.6e-34 Identities = 194/209 (92%), Positives = 194/209 (92%), Strand = Plus / Plus Query: 151 AAACTATCAGTGTTTACGCTTTCATATGTAG--TCCGAATATGATCCTCTCTCTTTGTAT 208 | | | |||| |||||| || | | | ||||||||||||||||||||||||||| Sbjct: 6720 ATATTCTCAG-GTTTACAAGTTGACCCGGATCCTCCGAATATGATCCTCTCTCTTTGTAT 6778 Query: 209 GCCACATACAAACACCAAGCATGTTTGTCTGAGAGGCTAGGTATGAACCCAAGGTCACTA 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6779 GCCACATACAAACACCAAGCATGTTTGTCTGAGAGGCTAGGTATGAACCCAAGGTCACTA 6838 Query: 269 CAAGAGGTGATGTAATATTAACATGGCTCGTCCAAGCGATGATGGCAGTTAAGAAGATTA 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6839 CAAGAGGTGATGTAATATTAACATGGCTCGTCCAAGCGATGATGGCAGTTAAGAAGATTA 6898 Query: 329 TCAATCACGCCTTCACAGAGGTGCAATAA 357 ||||||||||||||||||||||||||||| Sbjct: 6899 TCAATCACGCCTTCACAGAGGTGCAATAA 6927 >At3g07400 68416.t00797 lipase class 3 family protein contains Pfam profile PF01764: Lipase Length = 5414 Plus Strand HSPs: Score = 172 (31.9 bits), Expect = 7.6, P = 0.9995 Identities = 136/224 (60%), Positives = 136/224 (60%), Strand = Plus / Plus