At3g54350 SYNGENTA 49474
Genomic Sequence (from TAIR)
tcgagaatttgagaaaaagatgaaagtcgagaaatgattattgattatctgaggatttataaaatatataaaaaatatttaaagttcaaattttattaat cctactaatattagtttagaagtacatttaaaaaatatgaactaatatctatcatctaaaagagtataaattacaacaacaaacgaaatgtgttgaaaga ggctgtttttccgggaaataagcatttgaagtttagtttcagaaaaaggagttaaaagaagagcaaagtaaaaaaatcacatatatccaaaacggtgtcg ttccattctcaaacgtgctttatcttcttctttacacactctcgcctccggacgacggagacagtcagatataaattagggtttcagattttttagattt tatctcttcaattcgagccagtgaattgccgcctcctcctcctcctcttcttccctcaagttagttactttcgtcttgagttttctaaattctctatcta taaattgtgatatcaacttgtgagaatttcgaaaaaattgtatgtgcgtcttctttggagcttgagaatttaacgagagtattgattttttacctacagt acataaccaaagcaatgaaattctacttgtatcctgtaatggctgactaaatcaactgcgaatcgtggttcgtcactttcttaattaactattttttttt cgatctttgtctaatttcaataatttatccaaatcctgatacttgttgttccagttttgtgacatggttactgttgctaggctattgaacctcactcttg ttgttcccgagattgacaaaacatccttctttgctgattcaaggtattgtaactccttttcttaaacattttctgtttctcttacgttcttaaaccctat tgcaaaacgaaacctagaagaatgcttcagattactagaagagcttaacggtgagaaagagaaacccattaattccatttcaagtagtgctagaccaagt aatagcgtcgtctttgttagtgttgttcaccgtagagaaaaccaaatttgaatcacttctgatgatattgttgcctacatctgtctgattttgatttcgt ttaattaggttttgtgttctgtcaccatctcttagaccccttctacgttacgctttcctgagagaagtaaaggtctggttgtgcagtgaacATGGGGGCT CTTGCTCAAGTTGTTCCGTGGATACCCGAAGACGACCTGCTGCTAAAGAATGCTGTCGAGgtgagctcccatttcattgagtttggttacatttcagttt tcattattttactaccggaaatggattatgttggattgagccatgggtttgatctcaatatttgtctcaatttcctgtcctttcacgcgctttatgtagt tcaatgatcatgtagttttcttattctaccatgcttgtttgcagagctgtatcaattttgcttaaattgaagtagttgtctagttggaacattaatgact atcagttctgtcgctcatgatgtttctaggctttcttcttcatagttgcttgtatctatagttgattttgaggggattggagagtacgacatatcctttg aggcaggttattatcagtaattttctttcctaaaagagatgcctatctagttgattctatcatctattaatattgttttggttgcatttttttccttttc atgtcttgtgataacttgaattttcgggacaaaaggttggttgcagatatcaaaatttagttgaataaccatgtcagctttttgtttgatcctgttaaca tcttaagccagtgttatatgcggtatagtatagtattatgggaaacaagttacacaatcttgatgtggcaaggtataattgttgctctagaacaaattat accatttcgcgaggaacataatatattgctgtgtgatcactgatgatctgtatgtatcatgcttctctccacggggaaaagactgtcaaatattttttct taaatttggttttctgttcagttatgagaacataatatgattgaaaaaatatccttttgtctttttacagatggctcatcaatcaccacaagatagataa ttatgttcattgcttctctcatatagcattttatatatcaagctaggctagccaaaaagtttctctactaaattagtgcttctgtatgtatgtattgcgt gtttcttctttcagcttgtctggtaatcttgcaattaagtgaaccagaatccttaatttatttgcagGCTGGTGCTTCTTTGGAATCGCTTGCTAAAGGT GCTGTGCAGTTTTCTAGAAGATTTTCTATTAGAGAATTGCAAGATCGATGGCATGCACTGCTTTATGATCCAGTAGTTTCTGTAGAGGCGGCTTTTCGGA TGGCTGAGCTTGAACGTACTAACCCTAATTTTCCTACTAAGTTTGGTAGAACTGGATATTCAAAAGAAAACAAAAGTTCATCTAGGAAGAGGAATGCTGA AAGGCTCAGAAGTACTTATCATTCCTTGCGGAAGAAATTTAGGACTGAGCCATTCAATTCCTTGGATCTAGGTTTCCTCGTTCCACCAAATGATAGCCAT TTCATGGATAATGGTGATGCAACACATCTTGGTCTTGAGGACTCTCACATGGATATTATCCACAACGCGTTTCCAGAAATCTTGGCTGAAGGTGGTTGCG TGACAACTCATGTTCTGCCAGAAGATAATTTACAGGGAGACATTCCTTACGTAGAAGGAGAAAATCTCACATTCACTGAACACGCAGGTCTATCAGTATG TGATGTGGTTCATCAAGATTCCGAGCAGAAACTAGAGAATACTGCTCACGAGGCAAAAAACACAATGGCTAGCACTGATTTCCTGGCACAGCTTTCAACT TCTCTTTTCGAAGAAGACATGGAACCGTTCATGGAAGTAGATGGCAAAGAAGTTGACAAGTCATATTATGATGGTCTTAGCTCACTGTTGGTGAACTCTA CAAATGATACAAACCGCGAGGCTTTTCCTAACCCCACCGAGCAAGAACCTTCCATTGCACCAACTCATCCAGGAGAGGCAACCCTGGATGATCATGTGAT GCTTGAGCTAGATGGTACAATCGCTTTAGATCCTCATCCTGAGATTGTTGGGGGTGTAATCTGCTGTTTATTAAACGAAGAGGATCCTGATATTCCGTGT AATGATGACATTTTCCTGTCCAACAACTCCCGTCCGATGTCAGTTTCTTCTTTAGCCCGGCGGAACTTTAAGGATACCAATAGTCCAATAACTACATGTG TAAGAGACGTCTCCGCCAGTAAGGAAAAAAGTGAGGGATATTCACTCCAGGCTCAAAAGAAAAAACCAGGACGTTTACAGGGGTCTACTCAAGGAAAGCC AGAGATGGGCCAACCAAGTAAAGGTAGCAAATTCAGGGCATCGACTAGTACTGAGTTAAAGAATACTGTAGCTCCTGGTGGTTCTTCCTCTGCACAGGCT TGCTCTAATACTCTACTTTCTACTGGTACCGGTGCAAAAGATGGAAAGAAAGAAACTGCTACTGGAACACTCTTTGTCGGATCTGATGGCCATGGCAACC ACCCAGAGAAGGATAGTGAAAATTGTAAAGAGAAAAATGTTGTACCACCTGTTAATGAATCGCCACATGCTAAAGATACTGATGATGGCTTGATAGAGAT TACAGTCCCTGAGCTGGAGATCACCCGTGCAGAAGCAGAAGCAGAAGCAGAAGCGCATGTTTGTGAGAGTGATGAGGACTTACCCAATTATTCTGACATT GAGGCTATGgtaactcttgacttccatctttattcttgtgctatggttccatgacacgtaaacacctaatccataacactcttttttatttcagATACTT GACATGGACTTGGAACCTGATGATCAAGATAATTTTGATCTCGAAGgtagttgagcgtcccttctcgtccagtggaactcatgtttctttctatctatct acatttttgggaaaagaaagcttttagtatgtgaataggaatgtatttcggcatttggctcctaaaagttattacatgctgcagtgatgtgggaaacctt ttctatgggtagcgtatgagatgttagaagaggtttaaggcttgtttgtaaatccctaaaatgttttcacttgcagTCTCCAAGTATCAGAGCCAAGACA TGAAAAGAACAATCATAAGACTTGAGCAGGCTGCTCATTCATATA◄TGCAAA◄GAGCCATTGCTTCCCGTGGTGCATTCGCTGTTTTATATGGCAGATAT TCAAAACACTATATCAAGAAGCCTGAGgtaat►at►tatcttattcgtttaatattccttgtatgatttgataagcttcttaagaattatagtagcactt gttgatatcggggttcttttttcttaacatagGTTTTGGTGGGTAGATCAACAGAAGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGTAG CAAAATATCTCGACGACAGgtcggtcaatagtagatacttctatttgtattttaggtctttaagttgtatgagaagcagcagcccaggatctgtaatggt tgttgtgtatgtttttttcctttttgggttactgaatgcagGCGATCATACGGCTGGGTGATGACGGTTCGTTTCATATAAAAAACCTGGGGAAGTATTC AATCTCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGTTTAATCCTCAAATCCGATTGTCTAGTTGAGgtttgatccgggatactcttttatgatcat tacttacgcttctaggtccgtacttaaacccgatatatgtgcgcgcagATACGGGGAATGCCTTTTATATTTGAAACAAACCAAAGTTGCATGCAAGAGT ACCTGAAGAGAAGAGGGAAAGTGAACTGAgaccagatcaagagtgcgtgttgtttgtgtagatgaatgatgcatctcttgtgtaatgtaccttagccata ggaacacgtcttgtagatcttttaatacatctttagttccgcatcatgcatagttgaccctgttttaaggcgttgaaatgaaaatacaagtctcttgtat ctgaatttgtgttttaagcgaagaatgattgttcttgtgaagttgatacacaagttctttggatatcctatcagtataaaggataggtttccattttcgt gactcactcactgatttccattgcttgaaaattgatgatgaactaagatcaatccatgttagtttcaaaacaacagtaactgtggccaacttagttttga aacaacactaactggtcgaagcaaaaagaaaaaagagtttcatcatatatctgatttgatggactgtttggagttaggaccaaacattatctacaaacaa agacttttctcctaacttgtgattccttcttaaaccctaggggtaatattctattttccaaggatctttagttaaaggcaaatccgggaaattattgtaa tcat
Border_1 (49474_LB1U)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTATATGAATGAGCAGCCTGC
TCAAGTCTTATGATTGTTCTTTTCATGTCTTGGCTCTGATACTTGGAGACTGCAAGTGAAAACATTTTAGGGATTTACAAACAAGCCTTAAACCTCTTCT
AACATCTCATACGCTACCCATAGAAAAGGTTTCCCACATCACTGCAGCATGTAATAACTTTTAGGAGCCAAATGCCGAAATACATTCCTATTCACATACT
AAAAGCTTTCTTTTCCCAAAAATGTAGATAGATAGAAAGAAACATGAGTTCCACTGGACGAGAAGGGACGCTCAACTACCTTCGAGATCAAAATTATCTT
GATCATCAGGTTCCAAGTCCATGTCAAGTATCTGAAATAAAAAAGAGTGTTATGGATTAGGTGTTTACGTGTCATGGAACCATAGCACAAGAATAAAGAT
GGAAGTCAAGAGTTACCATAGCCTCAATGTCAGAATAATTGGGTAAGTCCTCATCACTCTCACAAACATGCGCTTATGCTTNTGCCTATGCT
| Start of BLAST Alignment: | NT 3060 / Exon 7 of 10 (3 Exons before ATG) |
| First 15 bp Perfect Match: | NT 3054 / Exon 7 of 10 (3 Exons before ATG) |
BLAST Details: Query Sequence: 49474_LB1U Length: (592 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54350 68416.t05570 forkhead-associated domain-contain... 2532 1.4e-109 1 At1g75530 68414.t08032 forkhead-associated domain-contain... 258 0.0011 1 At2g44580 68415.t05078 zinc finger (C3HC4-type RING finge... 211 0.22 1 At5g39970 68418.t04510 expressed protein low similarity t... 207 0.32 1 >At3g54350 68416.t05570 forkhead-associated domain-containing protein / FHA domain-containing protein MSP58 - nucleolar protein, Mus musculus, EMBL:AF015309 Length = 4778 Minus Strand HSPs: Score = 2532 (386.0 bits), Expect = 1.4e-109, P = 1.4e-109 Identities = 512/518 (98%), Positives = 512/518 (98%), Strand = Minus / Plus Query: 592 AGCATAGGCANAAGCATAAGCGCATGTTTGTGAGAGTGATGAGGACTTACCCAATTATTC 533 |||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3372 AGCAGAAGCAGAAGCAGAAGCGCATGTTTGTGAGAGTGATGAGGACTTACCCAATTATTC 3431 Query: 532 TGACATTGAGGCTATGGTAACTCTTGACTTCCATCTTTATTCTTGTGCTATGGTTCCATG 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3432 TGACATTGAGGCTATGGTAACTCTTGACTTCCATCTTTATTCTTGTGCTATGGTTCCATG 3491 Query: 472 ACACGTAAACACCTAATCCATAACACTCTTTTTTATTTCAGATACTTGACATGGACTTGG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3492 ACACGTAAACACCTAATCCATAACACTCTTTTTTATTTCAGATACTTGACATGGACTTGG 3551 Query: 412 AACCTGATGATCAAGATAATTTTGATCTCGAAGGTAGTTGAGCGTCCCTTCTCGTCCAGT 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3552 AACCTGATGATCAAGATAATTTTGATCTCGAAGGTAGTTGAGCGTCCCTTCTCGTCCAGT 3611 Query: 352 GGAACTCATGTTTCTTTCTATCTATCTACATTTTTGGGAAAAGAAAGCTTTTAGTATGTG 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3612 GGAACTCATGTTTCTTTCTATCTATCTACATTTTTGGGAAAAGAAAGCTTTTAGTATGTG 3671 Query: 292 AATAGGAATGTATTTCGGCATTTGGCTCCTAAAAGTTATTACATGCTGCAGTGATGTGGG 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3672 AATAGGAATGTATTTCGGCATTTGGCTCCTAAAAGTTATTACATGCTGCAGTGATGTGGG 3731 Query: 232 AAACCTTTTCTATGGGTAGCGTATGAGATGTTAGAAGAGGTTTAAGGCTTGTTTGTAAAT 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3732 AAACCTTTTCTATGGGTAGCGTATGAGATGTTAGAAGAGGTTTAAGGCTTGTTTGTAAAT 3791 Query: 172 CCCTAAAATGTTTTCACTTGCAGTCTCCAAGTATCAGAGCCAAGACATGAAAAGAACAAT 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3792 CCCTAAAATGTTTTCACTTGCAGTCTCCAAGTATCAGAGCCAAGACATGAAAAGAACAAT 3851 Query: 112 CATAAGACTTGAGCAGGCTGCTCATTCATATAA-CAAA 76 |||||||||||||||||||||||||||||||| |||| Sbjct: 3852 CATAAGACTTGAGCAGGCTGCTCATTCATATATGCAAA 3889 >At1g75530 68414.t08032 forkhead-associated domain-containing protein / FHA domain-containing protein Length = 2507 Minus Strand HSPs: Score = 258 (44.8 bits), Expect = 0.0011, P = 0.0011 Identities = 158/255 (61%), Positives = 158/255 (61%), Strand = Minus / Plus
Border_2 (49474_LB2D)
TTCATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAACGAATCCAAGTATCTTATTCGTTTAATATTCCT
TGTATGATTTGATAAGCTTCTTAAGAATTATAGTAGCACTTGTTGATATCGGGGTTCTTTTTTCTTAACATAGGTTTTGGTGGGTAGATCAACAGAAGAC
CTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGTAGCAAAATATCTCGACGACAGGTCGGTCAATAGTAGATACTTCTATTTGTATTTTAGGTCT
TTAAGTTGTATGAGAAGCAGCAGCCCAGGATCTGTAATGGTTGTTGTGTATGTTTTTTTCCTTTTTGGGTTACTGAATGCAGGCGATCATACGGCTGGGT
GATGACGGTTCGTTTCATATAAAAAACCTGGGGAAGTATTCAATCTCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGTTTAATCCTCAAATCCGATT
GTCTAGTTGAGGTTTGATCCGGGATACTCTTTTATGATCATTACTTACGCTTCTAGGTCCGTACTTAAACCCCGATATATGTGCGCGCAGATACGGGGAA
TGCCTTTTATATTTGAAACAAACCAAAGTTGCATGCAAGAGTACCTGAAGAGAAGAGGGAAAGTGAACTGAGACCAGATCAAGAGTGCGTGTTGTTTGTG
TAGATGAATGATGCATCTCTTGTGTAATGTACCTTAGCCATAGGAACACGTT
| Start of BLAST Alignment: | NT 3139 / Intron 7 of 9 (3 Introns before ATG) |
| First 15 bp Perfect Match: | NT 3141 / Intron 7 of 9 (3 Introns before ATG) |
BLAST Details: Query Sequence: 49474_LB2D Length: (752 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54350 68416.t05570 forkhead-associated domain-contain... 3258 4.0e-143 1 At2g28080 68415.t03172 glycosyltransferase family protein... 204 0.57 1 At1g75530 68414.t08032 forkhead-associated domain-contain... 188 0.991 1 >At3g54350 68416.t05570 forkhead-associated domain-containing protein / FHA domain-containing protein MSP58 - nucleolar protein, Mus musculus, EMBL:AF015309 Length = 4778 Plus Strand HSPs: Score = 3258 (494.9 bits), Expect = 4.0e-143, P = 4.0e-143 Identities = 660/676 (97%), Positives = 660/676 (97%), Strand = Plus / Plus Query: 76 AGTATCTTATTCGTTTAATATTCCTTGTATGATTTGATAAGCTTCTTAAGAATTATAGTA 135 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3969 ATTATCTTATTCGTTTAATATTCCTTGTATGATTTGATAAGCTTCTTAAGAATTATAGTA 4028 Query: 136 GCACTTGTTGATATCGGGGTTCTTTTTTCTTAACATAGGTTTTGGTGGGTAGATCAACAG 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4029 GCACTTGTTGATATCGGGGTTCTTTTTTCTTAACATAGGTTTTGGTGGGTAGATCAACAG 4088 Query: 196 AAGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGTAGCAAAATATCTCGAC 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4089 AAGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGTAGCAAAATATCTCGAC 4148 Query: 256 GACAGGTCGGTCAATAGTAGATACTTCTATTTGTATTTTAGGTCTTTAAGTTGTATGAGA 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4149 GACAGGTCGGTCAATAGTAGATACTTCTATTTGTATTTTAGGTCTTTAAGTTGTATGAGA 4208 Query: 316 AGCAGCAGCCCAGGATCTGTAATGGTTGTTGTGTATGNNNNNNNNNNNNNNGGGTTACTG 375 ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4209 AGCAGCAGCCCAGGATCTGTAATGGTTGTTGTGTATGTTTTTTTCCTTTTTGGGTTACTG 4268 Query: 376 AATGCAGGCGATCATACGGCTGGGTGATGACGGTTCGTTTCATATAAAAAACCTGGGGAA 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4269 AATGCAGGCGATCATACGGCTGGGTGATGACGGTTCGTTTCATATAAAAAACCTGGGGAA 4328 Query: 436 GTATTCAATCTCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGTTTAATCCTCAAATC 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4329 GTATTCAATCTCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGTTTAATCCTCAAATC 4388 Query: 496 CGATTGTCTAGTTGAGGTTTGATCCGGGATACTCTTTTATGATCATTACTTACGCTTCTA 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4389 CGATTGTCTAGTTGAGGTTTGATCCGGGATACTCTTTTATGATCATTACTTACGCTTCTA 4448 Query: 556 GGTCCGTACTTAAACCCCGATATATGTGCGCGCAGATACGGGGAATGCCTTTTATATTTG 615 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 4449 GGTCCGTACTTAAACCC-GATATATGTGCGCGCAGATACGGGGAATGCCTTTTATATTTG 4507 Query: 616 AAACAAACCAAAGTTGCATGCAAGAGTACCTGAAGAGAAGAGGGAAAGTGAACTGAGACC 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4508 AAACAAACCAAAGTTGCATGCAAGAGTACCTGAAGAGAAGAGGGAAAGTGAACTGAGACC 4567 Query: 676 AGATCAAGAGTGCGTGTTGTTTGTGTAGATGAATGATGCATCTCTTGTGTAATGTACCTT 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4568 AGATCAAGAGTGCGTGTTGTTTGTGTAGATGAATGATGCATCTCTTGTGTAATGTACCTT 4627 Query: 736 AGCCATAGGAACACGT 751 |||||||||||||||| Sbjct: 4628 AGCCATAGGAACACGT 4643 >At2g28080 68415.t03172 glycosyltransferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 2723 Minus Strand HSPs: Score = 204 (36.7 bits), Expect = 0.84, P = 0.57 Identities = 108/174 (62%), Positives = 108/174 (62%), Strand = Minus / Plus