At5g61410 SYNGENTA 49903
Genomic Sequence (from TAIR)
ataaatagccatttcctaaacacacaattttcatactctctcaaacctccaaaattcttgatcaatatcagataagaagaatgagtggaaaacgcagcaa tgtcggtggaggaaagagcggtggcgctggaggtaagagtggtggtggcggacaaagcagtggcggaggaaaaagcggcggcggaggagcaggagcaggt aatatggtagca◄ccagggacaaatgggggtgcttacatctcaaga◄ggtggattcgagagtaaccctcaaggttactttagtaacttgcatggcagtgg acaaagcaagaagtgacttgagtgttgttgttatactacaaccatgagccatcttctttgatctattctctatttaataaaatgctatgaagtacaaaca agtattgaataaatgagatttttatttttatgaggtgtttgttgctttgtgcttaacccactcttcttatttcttaatcaatctcgttagtcctcgtgaa ctatgtgcctaatcctatggatcatgggccttcttttttcagtatggccccatgatataaaagcatcatgtaaatagattacgaaatctatcaaatggga ctaaatttggtattctgtttttttctataaaatgacctaaaacattttttgtatatataattggttgacaaaattataaaatttaaaacgatgagttttt catgttaattaaaattttctatcaattgttttagtcatacatctcaaattgaatcttgattttagtatatacattcctattattttttatttatcaaata ttttgtaaaaattataaatgacctaaaatttttttttttattaattaactttttatttaaacgacaatttatttagaaattatatgttttgtatcactag taaaaatagatttattattttgcaaaattagcatattcccacaaatgtacaagacccgtcatcaaaagagagccaaccgtttgagatagcgataagccgc tgcattggatcatccgaacaaggaagacgttacccacgagaccgtaatcacacgtggcggattctcagatattctctctttttcttctttacccggaaaa ataaagtttctgttcttcttttttcttctctgggtttgagaattggtgtaagagaaacgattgaggttttctcttattatctaaacccaccaagtctttc aggattttagccagagaagcttgagtctttgattagggacATGTCAACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCCAGGTCAATGGGTTTGGTCTT AGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCCTTTTCTTTCTCCAGgtaactcaataaccatgattttgttctagttgctacgattgctcagggat aggtttgtttggcatccttaaattgaaattatgtggttattgaagattacttgaatcgttatataaatgaagtatctttcatgtctttgtggatattgct tattgttaagtctctgcagtaatatagatgttgctcagggagagcttatgcttatgatttgtcacttgataaagattcaatctgcattaacggttatctt taagttacactttggtatgtgaactttttgcagAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTTCGAAAAGTGATATCATT GTTTCTCCCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCGAGCAGgtaggtttttgttgctctcctctttggtttcttgtgtgtttgtttctccatt tcactatttccggcttctttcagGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACGGTCGTTTTGTTCCCAACATTAC TATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGACAGATCTTCCTTTGGATGTTCATCTGgtaaagactagcttcttttcttatctttttctatat atggtttcttgatgtttgaagtcacatttctagttaataaagattctctaaaatcagATGATAGTGGAACCCGAGCAGAGAGTACCGGATTTCATCAAAG CAGGTGCAGATATTGTCAGTGTACATTGTGAACAGCAATCCACCATCCATTTGCATCGTACCGTCAATCAAgtactgatattttcatgcttccacttttt aaaatttccttctggtggagtatataatcttaccttgtgctgctacaatggtgtttagATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTTCTAAACCCT GGAACCCCATTGAGTGCAATAGAATATGTCTTGGATAgtgagttttttttccttaacattgctctgtcattggcaagagatgattaagattgttctcatt ggaatatcgattgtttctgatatcagTGGTGGATCTGGTCTTGATCATGTCGGTCAACCCTGGTTTTGGTGGACAGAGCTTTATTGAAAGCCAAGTAAAG AAAATCTCGGACTTGAGGAAAATGTGTGCAGAGAAGgtatcaatcgagtaacttttctctccgagtgaaagcctcttctcttctcaaaacattgtattgt tttttctttagGGAGTAAACCCATGGATTGAAGTTGATGGTGGTGTCACTCCAGCGAATGCGTACAAGgtaaagctcagatactcttcctagtttctatc ttcaactcacattttactgctgtagatatttctgtgccttagagatctcgcgatattaaatcttttgtgagtgtaatagGTTATTGAGGCTGGAGCAAAT GCTCTAGTGGCTGGATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGgtatagagataaatccgatgtttcgtttactttctgagcttagccagtagg aaaatataacgttgctctgtttgtttgttgaaaaatctgcagCTATAAAAGGAATTAAGGCCAGCAAACGACCAGCAGCTGTAGCTGTGTAAtgtgaagc aacagcaagcgaaaagactctgttaaacttaggttaatgacttcgccatttctaaatactcatggttgtatctatatactctgcttgcagtacacaaact tggatcttgaaaacgaaaattcacatatttgacctgtttctttctttttttgatgagcaaatcctgtttctgggatttatctgtggtttgatctgacttg tagtaacttttatttcaggaacagttaaaaagtgaatgacgatcaccagaagtcccagatgttgtcgttgtgtctccattcgccataacattcacaagaa tcaaactcaatatcttcaaagtaggctcctctatactattctgtaccattgtcttgtaaattgaggatatgcagattccatacattttgcaatgaaacac tgtgataagaaatatgttgttacatatgtgtttttgacttataataaagcatttcatttgtcttgcgactcttgcccaaaaacccagagataatcacttt gc
Border_1 (49903_2ndbordercontigU)
KYTYSMGMYKTMAGYWYMYSCATTKSTMSCWKRTGCTACCATATTACCTGCTCCTGCTCCTCCGCCGCCGCTTTTTCCTCCGCCACTGCTTTGTCCGCCA
CCACCACTCTTACCTCCAGCGCCACCGCTCTTTCCTCCACCGACATTGCTGCGTTTTCCACTCATTCTTCTTATCTGATATTGATCAAGAATTTTGGAGG
TTTGAGAGAGTATGAAAATTGTGTGTTTAGGAAATGGCTATTTATAGAGAAAGAGACCCGATTCGGAGTGTTGGTCAAAAGTTGTGCTTCCCAAAATTAT
ATCGTAATCTCTGCATTACTTAATTGATTCAAATCACCTCGTAAAAGATATAAGTAGTACAATCTTACATTTACAAAGTGATTAGCCATTAATGGGTTGA
AATTTGAATGAGAATCCAAAACGTCTCTCCATATTCGTCACAATACTATTTTAGGCTTTATTTTAAGTAAAGCCCATTAGCATGAGGCCTAATTATTTAT
ATGCAGATCTATATAGTTTTTTTTGTGTGGCTTATCCTCTGTTTACAGAACTCCAATGATTAACATTTTATGGATTGTAGTGGATTCCATCGGNAAGAAG
ACCGATCTATTAGCATGAAATGCTCGCAATAAGAATCTAGTCTTTTTGATATGTCAGCACTTTTACTTTTTTGTTAGATGATGCATATAATGTATTCGTT
TAATCATTAAATAAAGTGTCTTTGTCACAAAAGAAGACATTGGATTATATACAGTATTGGTTTGGCTTAATAATATTGCCATATGATTATCGTAATTTGA
GTGGGCTTGGGCTCTTTTTTTGCAAGTTGACAACCAGTGAAATTAAAAGAAAAGTATCAAATTACTTTAGATTAAAATCTCCACACATGCCGACAAAAAA
ATAAAGCGCTCCCATATATAGCAAAAACGTGCTTAATGTAAAAAAAAACCTATAATACCAAAAGGAGTTTTTGACCAACAAAGTTTTCATCTTTTATTTT
CCACTACAATTTCAGATAAACAATGTGTTGGCTTTAAGTTTTCAATTTTTTTTATTTATATTTTTTAAAATATAGCGACTCCAAATGTATAGTAGTTGGA
AAGAGAATTTCAGATACTATACTAACGAGTGATCATATTAATACACTGCATATCAACAACATATGTTTTGATTGAATTTACCTATATATAAAATTGTTGA
TTAATTGTAACTCTGAATTATATACTTTACCCTAAATTGTGTCTTATCTTCATTCGCGTAATACAAACAAAAGTAACCAAAACAAAATTTGCAAACAATA
TTGAGTAACGAACCATTCGTGGACGATGGTGGAGTTCTGATATGAAGTAACACAATTACGCTCTTGACGATCGATGCAAGAGATACATAGCATGMCKGGG
GTTGAGAGCAGTCACGATRATTTGGTCTTGTAATAAGTTGCATTGTTTTGTGCCTCTTTGTAAGATCTTAGGGGCATTTGTACAATTCATTTTTTTTTCT
GAATTTTTTTGAGCGATGAGTGGGTCTAAAGGCCATTTATGAAAAGTGAGTAAGACTTCTTATCAGAATTATTGGTCAAACAAAAAAACTCTAAAACATC
TTAATTCTTATCGTTTTTTTCTTTATTTGGAATCAATGAGTGTATTAATATATGAAATCATGTTTCTATATCACTATATATTACGTTTTTTTGTGTGTGG
TAACCACATAAAATTATACAATATCATTCGAAAAAATTGAAATAAAGAATTAAAAATCATTTAAAAAGTGAAAATTAGAAATCGAATAATTTATTTCTAA
TTCTTTGACTGCTAGAGCGAATTCAAATAATATGCACATAAATACTTTATATATTATAATATAATTACATTATTATTAAGATTCGATTTTGTGTTTAGAC
AAGATTTGTAAATCCAATTAGACTTCTGTTTCACCTCGTGATCTTTTGGCTTTCATGTAAATTGTTTATTGACCACACAAATACACTATTATTGCAACGT
CTTTTTCGTTTGAGCATTTTTTGTTTGTTTTTCTTTTATTTTTCATTACTTTCACACATTTCTTATTAAATTCTACAATAATAGTAATTGGATTTATCGG
AAA
Start of BLAST Alignment: | < 993 / Upstream |
First 15 bp Perfect Match: | < 1026 / Upstream |
BLAST Details: Query Sequence: 49903_2ndbordercontigU Length: (2103 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MFB13 67899 8809 0. 1 MLD15 60543 282 7.5e-05 2 F12P19 51641 262 0.017 1 T22J18 51038 259 0.023 1 MFB13 67899 Length = 90,376 Plus Strand HSPs: Score = 8809 (1327.8 bits), Expect = 0., P = 0. Identities = 1852/2103 (88%), Positives = 1877/2103 (89%), Strand = Plus / Plus Query: 1 KYTYSMGMYKTMAGYWYMYSCATTKSTMSCWKRTGCTACCATATTACCTGCTCCTGCTCC 60 ++|+++|+++|+||++++++||||++|++|+++||||||||||||||||||||||||||| Sbjct: 57388 TCTTGAGATGTAAGCACCCCCATTTGTCCCTGGTGCTACCATATTACCTGCTCCTGCTCC 57447 Query: 61 TCCGCCGCCGCTTTTTCCTCCGCCACTGCTTTGTCCGCCACCACCACTCTTACCTCCAGC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57448 TCCGCCGCCGCTTTTTCCTCCGCCACTGCTTTGTCCGCCACCACCACTCTTACCTCCAGC 57507 Query: 121 GCCACCGCTCTTTCCTCCACCGACATTGCTGCGTTTTCCACTCATTCTTCTTATCTGATA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57508 GCCACCGCTCTTTCCTCCACCGACATTGCTGCGTTTTCCACTCATTCTTCTTATCTGATA 57567 Query: 181 TTGATCAAGAATTTTGGAGGTTTGAGAGAGTATGAAAATTGTGTGTTTAGGAAATGGCTA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57568 TTGATCAAGAATTTTGGAGGTTTGAGAGAGTATGAAAATTGTGTGTTTAGGAAATGGCTA 57627 Query: 241 TTTATAGAGAAAGAGACCCGATTCGGAGTGTTGGTCAAAAGTTGTGCTTCCCAAAATTAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57628 TTTATAGAGAAAGAGACCCGATTCGGAGTGTTGGTCAAAAGTTGTGCTTCCCAAAATTAT 57687 Query: 301 ATCGTAATCTCTGCATTACTTAATTGATTCAAATCACCTCGTAAAAGATATAAGTAGTAC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57688 ATCGTAATCTCTGCATTACTTAATTGATTCAAATCACCTCGTAAAAGATATAAGTAGTAC 57747 Query: 361 AATCTTACATTTACAAAGTGATTAGCCATTAATGGGTTGAAATTTGAATGAGAATCCAAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57748 AATCTTACATTTACAAAGTGATTAGCCATTAATGGGTTGAAATTTGAATGAGAATCCAAA 57807 Query: 421 ACGTCTCTCCATATTCGTCACAATACTATTTTAGGCTTTATTTTAAGTAAAGCCCATTAG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57808 ACGTCTCTCCATATTCGTCACAATACTATTTTAGGCTTTATTTTAAGTAAAGCCCATTAG 57867 Query: 481 CATGAGGCCTAATTATTTATATGCAGATCTATATAGNNNNNNNNGTGTGGCTTATCCTCT 540 |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 57868 CATGAGGCCTAATTATTTATATGCAGATCTATATAGTTTTTTTTGTGTGGCTTATCCTCT 57927 Query: 541 GTTTACAGAACTCCAATGATTAACATTTTATGGATTGTAGTGGATTCCATCGGNAAGAAG 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 57928 GTTTACAGAACTCCAATGATTAACATTTTATGGATTGTAGTGGATTCCATCGG-AAGAAG 57986 Query: 601 ACCGATCTATTAGCATGAAATGCTCGCAATAAGAATCTAGTCTTTTTGATATGTCAGCAC 660 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 57987 ACCGATCTATTAGCATGAAATGCTCGCAATAAGAATCTAGTCTTTT-GATATGTCAGCAC 58045 Query: 661 TTTTACTTTTTTGTTAGATGATGCATATAATGTATTCGTTTAATCATTAAATAAAGTGTC 720 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58046 TTTTACTTTTT-GTTAGATGATGCATATAATGTATTCGTTTAATCATTAAATAAAGTGTC 58104 Query: 721 TTTGTCACAAAAGAAGACATTGGATTATATACAGTATTGGTTTGGCTTAATAATATTGCC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58105 TTTGTCACAAAAGAAGACATTGGATTATATACAGTATTGGTTTGGCTTAATAATATTGCC 58164 Query: 781 ATATGATTATCGTAATTTGAGTGGGCTTGGGCTCTTTTTTTGCAAGTTGACAACCAGTGA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58165 ATATGATTATCGTAATTTGAGTGGGCTTGGGCTCTTTTTTTGCAAGTTGACAACCAGTGA 58224 Query: 841 AATTAAAAGAAAAGTATCAAATTACTTTAGATTAAAATCTCCACACATGCCGACAAAAAA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58225 AATTAAAAGAAAAGTATCAAATTACTTTAGATTAAAATCTCCACACATGCCGACAAAAAA 58284 Query: 901 ATAAAGCGCTCCCATATATAGCAAAAACGTGCTTAATGTNNNNNNNNNCCTATAATACCA 960 ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 58285 ATAAAGCGCTCCCATATATAGCAAAAACGTGCTTAATGTAAAAAAAAACCTATAATACCA 58344 Query: 961 AAAGGAGTTTTTGACCAACAAAGTTTTCATCTTTTATTTTCCACTACAATTTCAGATAAA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58345 AAAGGAGTTTTTGACCAACAAAGTTTTCATCTTTTATTTTCCACTACAATTTCAGATAAA 58404 Query: 1021 CAATGTGTTGGCTTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATATAGCGACT 1080 |||||||||||||||||| |||||||||||||| Sbjct: 58405 CAATGTGTTGGCTTTAAGTTTTCAATTTTTTTTATTTATATTTTTTAAAATATAGCGACT 58464 Query: 1081 CCAAATGTATAGTAGTTGGAAAGAGAATTTCAGATACTATACTAACGAGTGATCATATTA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58465 CCAAATGTATAGTAGTTGGAAAGAGAATTTCAGATACTATACTAACGAGTGATCATATTA 58524 Query: 1141 ATACACTGCATATCAACAACATATGTTTTGATTGAATTTACCTATATATAAAATTGTTGA 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58525 ATACACTGCATATCAACAACATATGTTTTGATTGAATTTACCTATATATAAAATTGTTGA 58584 Query: 1201 TTAATTGTAACTCTGAATTATATACTTTACCCTAAATTGTGTCTTATCTTCATTCGCGTA 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58585 TTAATTGTAACTCTGAATTATATACTTTACCCTAAATTGTGTCTTATCTTCATTCGCGTA 58644 Query: 1261 ATACAAACAAAAGTAACCAAAACAAAATTTGCAAACAATATTGAGTAACGAACCATTCGT 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58645 ATACAAACAAAAGTAACCAAAACAAAATTTGCAAACAATATTGAGTAACGAACCATTCGT 58704 Query: 1321 GGACGATGGTGGAGTTCTGATATGAAGTAACACAATTACGCTCTTGACGATCGATGCAAG 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58705 GGACGATGGTGGAGTTCTGATATGAAGTAACACAATTACGCTCTTGACGATCGATGCAAG 58764 Query: 1381 AGATACATAGCATGMCKGGGGTTGAGAGCAGTCACGATRATTTGGTCTTGTAATAAGTTG 1440 ||||||||||||||+|+|||||||||||||||||||||+||||||||||||||||||||| Sbjct: 58765 AGATACATAGCATGACTGGGGTTGAGAGCAGTCACGATGATTTGGTCTTGTAATAAGTTG 58824 Query: 1441 CATTGTTTTGTGCCTCTTTGTAAGATCTTAGGGGCATTTGTACAATTCANNNNNNNNNNN 1500 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58825 CATTGTTTTGTGCCTCTTTGTAAGATCTTAGGGGCATTTGTACAATTCATTTTTTTTTCT 58884 Query: 1501 NNNNNNNNNNGAGCGATGAGTGGGTCTAAAGGCCATTTATGAAAAGTGAGTAAGACTTCT 1560 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58885 GAATTTTTTTGAGCGATGAGTGGGTCTAAAGGCCATTTATGAAAAGTGAGTAAGACTTCT 58944 Query: 1561 TATCAGAATTATTGGTCAAACAAAAAAACTCTAAAACATCTTAATTCTTATCGTTTTTTT 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58945 TATCAGAATTATTGGTCAAACAAAAAAACTCTAAAACATCTTAATTCTTATCGTTTTTTT 59004 Query: 1621 CTTTATTTGGAATCAATGAGTGTATTAATATATGAAATCATGTTTCTATATCACTATATA 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59005 CTTTATTTGGAATCAATGAGTGTATTAATATATGAAATCATGTTTCTATATCACTATATA 59064 Query: 1681 TTACGTTTTTTTGTGTGTGGTAACCACATAAAATTATACAATATCATTCNNNNNNNNNNN 1740 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59065 TTACGTTTTTTTGTGTGTGGTAACCACATAAAATTATACAATATCATTCGAAAAAATTGA 59124 Query: 1741 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTCTAA 1800 |||||||||| Sbjct: 59125 AATAAAGAATTAAAAATCATTTAAAAAGTGAAAATTAGAAATCGAATAATTTATTTCTAA 59184 Query: 1801 TTCTTTGACTGCTAGAGCGAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1860 ||||||||||||||||||||||||| Sbjct: 59185 TTCTTTGACTGCTAGAGCGAATTCAAATAATATGCACATAAATACTTTATATATTATAAT 59244 Query: 1861 NNNNNNNNNNNNNNNNNNNGATTCGATTTTGTGTTTAGACAAGATTTGTAAATCCAATTA 1920 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 59245 ATAATTACATTATTATTAAGATTCGATTTTGTGTTTAGACAAGATTTGTAAATCCAATTA 59304 Query: 1921 GACTTCTGTTTCACCTCGTGATCTTTTGGCTTTCATGTAAATTGTTTATTGACCACACAA 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59305 GACTTCTGTTTCACCTCGTGATCTTTTGGCTTTCATGTAAATTGTTTATTGACCACACAA 59364 Query: 1981 ATACACTATTATTGCAACGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 2040 ||||||||||||||||||||| Sbjct: 59365 ATACACTATTATTGCAACGTCTTTTTCGTTTGAGCATTTTTTGTTTGTTTTTCTTTTATT 59424 Query: 2041 NNNCATTACTTTCACACATTTCTTATTAAATTCTACAATAATAGTAATTGGATTTATCGG 2100 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59425 TTTCATTACTTTCACACATTTCTTATTAAATTCTACAATAATAGTAATTGGATTTATCGG 59484 Query: 2101 AAA 2103 ||| Sbjct: 59485 AAA 59487 MLD15 60543 Length = 82,430 Minus Strand HSPs: Score = 282 (48.4 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05 Identities = 227/384 (59%), Positives = 230/384 (59%), Strand = Minus / Plus