At3g54670 SYNGENTA 51055
Genomic Sequence (from TAIR)
atgaacaaaacctaaactttaccaatttaacaaatcatttagaaaacacacaaacaggttacaatacaaaaatcttctttacaaagttaaaaccgaatga aaacttgacactactaatctataaacatgagtatatatagtttttcttgcaaaatatcataaaaacttgattattttttttaaaaacataagatagaaca atttagtcgagcccatacgaaactacgccgtatcattcggcccagccctttgattaaaaaattaaacgcactgtgagtctgtgaaatctcctcggcttca acttccggattaaggggaagagatgaaattctgaaatcccttgagagaaagatttgtttcgcctctcaaaacattttcaattcccgccaattttcttctc cgagaatacccccaaccttctagaaaccctaatttggtttaatttcattctccactactttctctgaaaccaaactcgagatctctcccccaatcATGCC TGCGATACAATCCCCATCGGGGAAGATCTTGCAGCTTGAGATGGAGAATTTCAAATCTTACAAGGGTCATCAATTGGTTGGTCCTTTCAAGGATTTCACT GCTATTATTGGTCCCAACGGTTCTGGCAAATCTAACCTAATGGACGCTATTAGCTTCGTCCTCGGCGTTCGTACCGGTCAACTTCGTGGTTCTCAGCTTA AGGATCTTATCTACGCTTTTGATGATCGTGACAAGGAACAGAGAGGTCGTAAAGCTTTTGTTCGACTCGTTTATCAGATGGACGATGGAGTAGAGCTTCG TTTCACTCGTTCTATTACTAGCGCTGGTGGGAGTGAGTACCGTATTGATAATAGGGTTGTGAATTTGGATGAGTACAATGGGAAGCTACGATCTCTTGGG ATACTTGTTAAGGCTCGTAATTTCTTGGTCTTTCAGgttgttgcttcgatttaattctatttttgtattgtttctatgaacgattctgtttgtttgatgt gaatttcgtgtttaattgttctggattgcaaaatgtagGGTGATGTTGAATCTATTGCTTCGAAGAATCCAAAAGAACTTACTGGACTCCTCGAGGAGAT TTCTGGTTCCGAGGAGCTTAAGAAAGAGTATGAAGGACTAGAAGAAAAGAAGGCCAGCGCTGAAGAAAAAGCAGCTCTTATATACCAGAAGAAGAAAACA ATTGGAAATGAGAAGAAGCTGAAGAAAGCACAAAAGGAAGAAGCTGAGAAGCATCTA◄AGGCTGCAGGAAGAACTGgtatttatgtggatttgctcttgt tctctagtggagaagtgctgatttatttagtttgtgaactagcgtatctgcctacctgttaatctgtcttcacgccttgcagAAAGCTCTGAAGAGAGAA CGCTTCCTATGGCAATTATATAACATTGAAAATGATATCGAGAAGGCGAATGAGGATGTTGATTCTGAAAAGAGCAATCGTAAAGATGTCATGAGAGAGC TGGAAAAGTTTGAACGTGAGGCAGGTAAGAGAAAGGTAGAGCAAGCAAAGTATCTGAAAGAAATTGCTCAACGTGAGAAGAAGATTGCTGAGAAAAGCTC GAAGCTTGGAAAAATTgtgagtataccttggaaatctgtggttaacagattctattttcccttttaaatatagcattttgagacatgtcttacatttttt tttttttttt►gtaat►cctctggaatttcactaaactttctcacttgagtaacttatatctgtacctttcctgtgagcagCAACCTGAGCTTCTGAGAT TTAAGGAGGAGATAGCTCGCATAAAAGCAAAAATTGAGACCAATAGAAAGGACGTGGATAAGAGGAAAAAAGAAAAAGGGAAGCATTCCAAAGAAATTGA ACAGATGCAGAAAAGCATTAAGGAGCTGAATAAGAAAATGGAATTATTTAATAAGAAGAGACAAGATAGCAGCGGAAAACTCCCAATGCTTGACAGTCAA CTGCAAGATTATTTTCGACTgtaagtttgaaagaaataaggatttttttctcttcgcaaaaaaattgccgttttccaactgtcctgaggttatagatatg caccaacttgatttctctatattgcctatttaatcttcttgcttgagtttttgtggtgtaatgaatactacatgggtttacatgtttaacaaaaaagttt aatgaaatatttgttgggtatgagtacttattctgtgctatgaagaacagtctaagcaaacaaatagttacgcgttttgtttgacataatgacataaatc tggttgtttacaggctctattattggtgctgttgttgtgacttttgtaatatgctctattattcacccttttgaatccttacgactacctttgttttcta attaatgttccttcatgtttgtcactgtggttttgtctcagAAAAGAAGAAGCTGGAATGAAAACCATTAAGCTAAGAGATGAGCACGAGGTTCTAGAGA GGCAACGGCGTACCGATCTTGAAGCATTGAGAAATCTGGAAGAAAATTACCAGCAACTAATAAATAGGAAGAATGATCTTGATGAACAAATTAAGCGATT TAAAGACAGGCAAGGAGAGATTGAAACATCTTCGTCGAAATATAAGAATGAAACAACTAGTCTGAAAACGGAGTTACGTGCACTGCAAGAGAAGCACGTA AATGCCAGgttagtttatgtcctctactcactaggttgtctagcaatggatggtttacttgcgatgttatgatatcctttaaatgcgacacattgctgca agtttttttaaaacctccttagagattcttcttgcggttgcttcatcttttgaactatggcttgagagatattggtaattcatttttcaagaacacatta ttttccatcttccctatccatagtataaaccccttcttgagcaggcgaaatacattttgtatcccctgatactgaaattcaggatctgctgctgtactga attcctagctaaaccaaaatgaagcttgtaggctcgtagagaaaccttcaaagtcccttgaggtgcacctcaccagggagaactttatatttgttcttga tagttgctaacctgcttatatgatgaacagGGAGGCCTCTGCGAAGTTGAAGACTAGAATCGCGGAATTAGAAGACCAGTTAAGTGATTTAACGGCTGAA AGGTATGAAAATGAGAGAGATAGTAGGCTAACACAGGCTGTTGAGTCTCTCAAGCGTCTATTTCAAGGAGTTCATGGTCGGATGACTGATCTTTGTCGGC CAAATCGGAAGAAGTATAACCTTGCTGTCACTGTTGCCATGGGAAGATTTATGGATGCAGTAGTTGTAGAAGATGAAAACACGGGAAAGGATTGCATCAA Ggtacttatcttatggtgttctatcctatggaatctgtgaacttctaaattcgtaatttctatctcttctctgctgacaattatagtttcagactttcaa taacaggtaagtaagatatcctttacccatattactactcactagcatatgtcagcaaattaatgatgttttaaacaatacaacctcttagtgatgcctt agactctaccacgtcctaaatgatacaattcatattatttaggtatgtaacatatatgctgtaatcatctccaggcagacttcattccttagaattaaaa attaacccctattctatgatacttggcttcaacttaacttttcgaagctttttctaccttgcttttaagcaatttgaagtatatgtttaagaggactttg taccactgctctaggtatgtgatgaaatgagttcttcttttttttttggtaatttgcagTACTTGAAAGAGCAAAGGCTTCCTCCTATGACATTTATTCC TCTTCAGTCAGTACGTGTCAAGCAAGTGTTTGAAAGATTGAGAAATTTGGGTGGCACAGCAAAGCTGGTGTTCGATGTTATCCAATATCCTTTGCATATA AGTGAAgtgatttgacttaaggatactcaaggttacctgtattgaaaacttctcatcccttggattcatatcattgcgtgcatagctgttggtagcttaa gataattttaatatattaaaccaagtattgagaagtatagaaaggtttacgtgagcagGTTTCTAAAATATATATTTTTGTCCTTAACTACTCCACGTTC GATCCTGAATTGGAGAAGGCGGTTCTCTATGCTGTTGGAAATACTCTTGTCTGCGACGAACTTGAAGAAGCCAAGGTTCTTAGCTGGAGCGGAGAGAGAT TTAAAGgtatgttcttgtttccttctttagatgtaatttactcatatatttgcactaaagttggcgttactttctacataacttgatttctgttatttct agTTGTGACTGTTGATGGTATATTACTCACAAAGGCGGGAACAATGACTGGTGGTACAAGTGGTGGAATGGAAGCAAAGTCTAATAAATGGGATGATAAG AAAATTGAAGgttagtttgacaccagctggtttaaagcctcttcacttctgatgtattttcttagaagagatatttgtttgtgcagGTTTGAAGAAAAAT AAAGAAGATTTCGAACAACAACTAGAAAATATTGGATCTATTCGAGAAATGCAAATGAAAGAGTCTGAAATATCGGGTAAAATAAGTGGACTTGAAAAAA AGATTCAGTATGCTGAAATTGAGAAGgtaacaaccaatttatcttttctaagatgagtggtctcatatattttacttactgttgtcaagagaaccctgat tgggataagaatgccatacagtagcacccattttatctttccttctgctaggaggagctgtcactattcagaatatactaattggggaatttgtttaaca gAAAAGTATCAAAGACAAACTTCCACAGCTTGAGCAAGAGGAGCGGAATATCATTGAAGAAATTGATCGCATAAAACCTGAACTCTCTAAGGCAATTgtc tatcttttctgatatttggtagagttaatacctgatgaaaatagtatgactgaatgtcattggtatttaatgtagGCAAGAACTGAGGTCGATAAGAGAA AGACAGAAATGAATAAGTTGGAGAAAAGAATGAATGAGATCGTGGACCGTATCTATAAGGATTTTAGCCAGTCTGTTGGGGTTCCAAACATACGTGTATA TGAAGAAACTCAGCTCAAGACTGCTGAAAAGGAGGCTGAAGAAAGGCTGGAACTGAGTAACCAGCTTGCTAAGTTAAAATACCAgtatgtctcttctgct ctgtttttctggttacatatcaattctagtcaaactacacatttacaatattactctcttttgatttctttttcccgtttttgtgctaacatatagctct gattctgaagttaacatgccattcctgatttttcgttttttgtaaaactaaacactatcttgtgcatcatattattgtcacattttgactttcacgtgcc tactaaaaagaagggactacggaactgtgtgaattttgtaattattatgcagctatggtctacactatcttgtattaccaagtgtgtgagggtcagtatc ctgtagcctgtaaaaacctgtgttacaaacctctactacacgctaactggttggctgagttgacatactgctttctattgaatggagcttgagttgtatg atcagagtaaaagtacgtaatttagttggttcttgaaaatcattttttcgaatttcagGCTGGAATATGAGCAAAACCGTGATGTGGGGTCACGGATTCG AAAGATAGAGTCTTCTATCAGTTCTCTGGAAACTGATTTGGAAGGTATACAGAAGACAATGTCTGAACGTAAGGAGACAGCGGTAAAAATAACTAATGAA ATCAACAATTGGAAGAAGGAAATGGAAGgtatattgattctatctttacatacatctgatgacatttttagttctaaacttttttttaatctcagtgcca ttttgagttgtcaatttgaggatttcattcgtagcagacattatcatgaacctgtaaaagtacattgtctgtatctatgttggagctctgttactgaatt gatatattcaaatatggaattttcttattctttttagcggttatatctatggatatttacatgctgttttcaaccaattgtctgtttgcattacataatc cttgatgtttggttgattgctctttgaacaaattttgggatgtacatggtctgctcgacatcttgcgtaaatgtatggttatgctacgtctgaatctaat tcagaaagaaactcatatcatgataaactgcttgaggctgacagatggttgatgtaaaagttcagtatgattaattctgtagcgctgctattctcttctt tgcttttgcttgtataagcataagttacagaaccatatactttgattataaccttacctgtctaatgttctttgcctagCAAGAATCTGCACTGGTATCT TCTTTCTTAGAGACTATCTAATGCTCCTGCTTGCAGAGTGCAAACAAAAGTCGGAGGAGTATGAGAAGGAAATCCTGGATTGGAAAAAGCAGGCTTCTCA AGCGACAACAAGCATAACCAAGCTCAATCGTCAAATACATTCGAAGgtacaatgaagattcatcaaaccctttcctaaagatctgatatgtttgagtata gatacactaaagcttccatatgctatcagGAAACACAAATTGAGCAGCTGATCTCACAGAAACAGGAAATAACTGAGAAGTGTGAGCTCGAACATATTAC CCTTCCTGTCTTATCAGATGCTATGGAGGAAGATGATTCAGATGGGCCACAGTTTGACTTTAGTGAGCTGGGTAGAGCTTATCTCCAAGAACGGAGACCA TCTGCTCGTGAAAAAGTGGAGGCAGAATTTAGGCAGAAAATAGAATCTAAAACATCCGAGATTGAAAGAACGGCTCCAAATTTGAGAGCGCTTGACCAGT ATGAGGCTATACAAGAGAAAGAAAAACAAGTTAGCCAGGAGTTTGAAGCGGCCAGGAAAGAGGAGAAGCAAGTAGCGGATGCCTTTAATACTGTTAAGCA GAAGAGgtaactcgaaatttctcttgtgaaatgatatctagagctttgaagacaattgttaccaaatatcaacgactatatggtattatggtgaaaccaa ataccgaacaagtaaaagtctgaagattctagttctggggaaattacctgtcaaagttactgtttggatacaatgcacacacatgcacatgtacaaagaa catattcagttttttcccaactaatatattccattatagttttttctgctcatttcaaattgttgtgcagGTATGAGCTATTTATGGAAGCTTTCAACCA CATTGCTAGCAACATTGACAAGATCTATAAGCAACTAACCAAGAGTAATACGCACCCACTGGGTGGGACTGCTTATCTAAACCTAGAAAATGAGGATGAT CCGTTTCTACATGGTATAAAGTATACTACAATGCCCCCAACAAAGCGATTTCGTGACATGGAACAGCTCTCTGGAGGAGAGAAAACAGTTGCGGCCTTGG CGTTGCTCTTCTCCATACATAGgtatcctcaacgacctagatatcccatttgtttcaatgttaaaagtgattttgtaggttcatattgatttatctgtgg tgtttagtttcactctttgaaattggactagaagatggtgatcttgccagatgaaatttgttatttgtgtctggaaccatcagatttgtttgactcctta gcattggttttaccagtctggcatcgtcttaggttttctgttcctagtaaaatacccatcttcaaaatcgctttttgtttctttacgatctgaaatttgg cctacgctctcgtgtaaatatagcatggttgttctgcaaaagaagtttccatggtcagttgttatgaggatttgatgaagtttgtggtgttgattacctt tccatttttcagctatagGCCTTCACCCTTTTTCATACTTGATGAAGTGGATGCTGCGCTTGATAATCTAAACGTGGCAAAAGTTGCTAAATTCATTCGT AGCAAGTCATGCCAAGCCGCACGTGACAATCAGGATGCAGAGGATGGGAATGGCTTCCAAAGCATTGTAATATCTCTCAAGGACAGCTTCTATGACAAGG CGGAGGCTCTGGTTGGAGTTTACAGAGACACCGAGAGGAGgtaagcagaatatccacataaatcttttgtacatgcgtctattttattggcataatatct gagaactcgttggagatgtatttttggctgcagTTGCTCAAGTACAATGTCATTTGACCTTAGGAACTACCAAGAATCGTGAttggttcaacaaccctcg ggggattagggtttaggtaagtataagaaccctaactttgtaagtatagcaagtactgaatgatgtttgattgttaggtttgtaatttttgtgtcacaat gttaaaaggtatttcacagtggtaaggtgctttatttgcgatttgatttggcataggaccttataagttctgacactgtagagaacctatggaacctttt cttatgtgatactataagaaactcgtgattttagctgcatctgattgacgttttatgttttgataatagtttttggagacatgttgtcaaagtagaagta aagacaaatgtttctttaattcgtcggactagaaatcaaatcttcaaaagccatttttgtcgtcccaatcgactttcaaaaaagctttaaattagaacga cac
Border_1 (51055_LB1D)
ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAGATGCTTCTCAGCTTC
TTCCTTTTGTGCTTTCTTCAGCTTCTTCTCATTTCCAATTGTTTTCTTCTTCTGGTATATAAGAGCTGCTTTTTCTTCAGCGCTGGCCTTCTTTTCTTCT
AGTCCTTCATACTCTTTCTTAAGCTCCTCGGAACCAGAAATCTCCTCGAGGAGTCCAGTAAGTTCTTTTGGATTCTTCGAAGCAATAGATTCAACATCAC
CCTACATTTTGCAATCCAGAACAATTAAACACGAAATTCACATCAAACAAACAGAATCGTTCATAGAAACAATACAAAAATAGAATTAAATCGAAGCAAC
AACCTGAAAGACCAAGAAATTACGAGCCTTAACAAGTATCCCAAGAGATCGTAGCTTCCCATTGTACTCATCCAAATTCACAACCCTATTATCAATACGG
TACTCACTCCCACCAGCGCTAGTAATAGAACGAGTGAAACGAAGCTCTACTCCATCGTCCATCTGATAAACGAGTCGAACAAAAGCTTTACGACCTCTCT
GTTCCTTGNCACGATCATCAAAAGCGTAGATAAGATCCTTAAGCTGAGAACCACGAAGTTGACCGGNACCGAACGCCGAGGACGAAGCTAATAGCGTCCA
TTAGGTTAGATTTTGCCAGAACCGGTGGGACCAATAATAGCAGNGAAATCCTN
| Start of BLAST Alignment: | NT 762 / Exon 2 of 18 |
| First 15 bp Perfect Match: | NT 762 / Exon 2 of 18 |
BLAST Details: Query Sequence: 51055_LB1D Length: (753 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54670 68416.t05608 structural maintenance of chromoso... 3290 2.9e-143 1 At4g12740 68417.t01900 adenine-DNA glycosylase-related / ... 236 0.025 1 At2g18540 68415.t02047 cupin family protein contains Pfam... 228 0.058 1 At3g28510 68416.t03233 AAA-type ATPase family protein con... 224 0.082 1 >At3g54670 68416.t05608 structural maintenance of chromosomes (SMC) family protein similar to SMC1 protein [Bos taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC protein) [Xenopus laevis] GI:3328231; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 8099 Minus Strand HSPs: Score = 3290 (499.7 bits), Expect = 2.9e-143, P = 2.9e-143 Identities = 664/670 (99%), Positives = 664/670 (99%), Strand = Minus / Plus Query: 752 AGGATTTCNCTGCTATTATTGGTCCCACCGGTTCTGGCAAAATCTAACCTAATGGACGCT 693 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 310 AGGATTTCACTGCTATTATTGGTCCCAACGGTTCTGGCAAA-TCTAACCTAATGGACGCT 368 Query: 692 ATTAGCTTCGTCCTCGGCGTTCGGTNCCGGTCAACTTCGTGGTTCTCAGCTTAAGGATCT 633 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 369 ATTAGCTTCGTCCTCGGCGTTCG-TACCGGTCAACTTCGTGGTTCTCAGCTTAAGGATCT 427 Query: 632 TATCTACGCTTTTGATGATCGTGNCAAGGAACAGAGAGGTCGTAAAGCTTTTGTTCGACT 573 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 428 TATCTACGCTTTTGATGATCGTGACAAGGAACAGAGAGGTCGTAAAGCTTTTGTTCGACT 487 Query: 572 CGTTTATCAGATGGACGATGGAGTAGAGCTTCGTTTCACTCGTTCTATTACTAGCGCTGG 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 CGTTTATCAGATGGACGATGGAGTAGAGCTTCGTTTCACTCGTTCTATTACTAGCGCTGG 547 Query: 512 TGGGAGTGAGTACCGTATTGATAATAGGGTTGTGAATTTGGATGAGTACAATGGGAAGCT 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 548 TGGGAGTGAGTACCGTATTGATAATAGGGTTGTGAATTTGGATGAGTACAATGGGAAGCT 607 Query: 452 ACGATCTCTTGGGATACTTGTTAAGGCTCGTAATTTCTTGGTCTTTCAGGTTGTTGCTTC 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 ACGATCTCTTGGGATACTTGTTAAGGCTCGTAATTTCTTGGTCTTTCAGGTTGTTGCTTC 667 Query: 392 GATTTAATTCTATTTTTGTATTGTTTCTATGAACGATTCTGTTTGTTTGATGTGAATTTC 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 GATTTAATTCTATTTTTGTATTGTTTCTATGAACGATTCTGTTTGTTTGATGTGAATTTC 727 Query: 332 GTGTTTAATTGTTCTGGATTGCAAAATGTAGGGTGATGTTGAATCTATTGCTTCGAAGAA 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 728 GTGTTTAATTGTTCTGGATTGCAAAATGTAGGGTGATGTTGAATCTATTGCTTCGAAGAA 787 Query: 272 TCCAAAAGAACTTACTGGACTCCTCGAGGAGATTTCTGGTTCCGAGGAGCTTAAGAAAGA 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 788 TCCAAAAGAACTTACTGGACTCCTCGAGGAGATTTCTGGTTCCGAGGAGCTTAAGAAAGA 847 Query: 212 GTATGAAGGACTAGAAGAAAAGAAGGCCAGCGCTGAAGAAAAAGCAGCTCTTATATACCA 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 848 GTATGAAGGACTAGAAGAAAAGAAGGCCAGCGCTGAAGAAAAAGCAGCTCTTATATACCA 907 Query: 152 GAAGAAGAAAACAATTGGAAATGAGAAGAAGCTGAAGAAAGCACAAAAGGAAGAAGCTGA 93 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 908 GAAGAAGAAAACAATTGGAAATGAGAAGAAGCTGAAGAAAGCACAAAAGGAAGAAGCTGA 967 Query: 92 GAAGCATCTA 83 |||||||||| Sbjct: 968 GAAGCATCTA 977 >At4g12740 68417.t01900 adenine-DNA glycosylase-related / MYH-related similar to MYH (GI:18845094) [Rattus norvegicus]; similar to adenine-DNA glycosylase (GI:12656850) [Mus musculus]; contains TIGRFAM profile TIGR01084: A/G-specific adenine glycosylase (hits below the trusted cutoff) Length = 3019 Minus Strand HSPs: Score = 236 (41.5 bits), Expect = 0.025, P = 0.025 Identities = 106/160 (66%), Positives = 106/160 (66%), Strand = Minus / Plus
Border_2 (51055_RBD)
CCAACGANATNCCGGCTCNCAANCTNCNNTCTGCTAAACATAGTAAACCCATGTAGTATTCATTACACCACAAAAACTCAAGCAAGAAGATTAAATAGGC
AATATAGAGAAATCAAGTTGGTGCATNTCTATAACCTCAGGACAGTTGGAAAACGGCAATTTTTTTGCGAAGAGAAAAAAATCCTTATTTCTTTCAAACT
TACAGTCGAAAATAATCTTGCAGTTGACTGTCAAGCATTGGGAGTTTTCCGCTGCTATCTTGNCTCTTCTTATTAAATAATTCCATTTTCTTATTCAGCT
CCTTAATGCTTTTCTGCATCTGTTCAATTTCTTTGGAATGCTTCCCTTTTTCTTTTTTCCTCTTATCCACGNCCTTTCTATTGGNCTCAATTTTTGCTTT
TATGCGAGCTATCTCCTCCTTAAATCTCANAAGCTCAGGTNTGCTGCTCACAGGAAAGGTACAGATATAAGNTACTCAANCGGAGAAAGNTTAGTGAAAT
TCCAGAGGNTTNCAAAAAAAAAAAANCGGGGNCCCNCCGCCCCCAACCTNCCNTTTTTCAANNGGNNAAAAAANATTNTNCCCCCCCNCTNTCCCCNGGG
NGCNCCCCNCCCCCTTCNNCCNCCNTNTNNAGNNCTTTCCCANCACNTNTCCTCTCCCCCNCNGAGNNNANTNTTTTTTTAGAAANACCTNNGGGGNGGN
NCCNCCACTGTNTTCNNCCCCGGCGAGGNGACNAANNTTTTCNCGNCGNCTNTAAAGACACTCTTNNTCCACCCCNTTNTTCCCAGAAAAACACCCCCCT
TTCCCCNCCNCNG
| Start of BLAST Alignment: | NT 1214 / Intron 3 of 17 |
| First 15 bp Perfect Match: | NT 1219 / Intron 3 of 17 |
| Reverse Complement |
BLAST Details: Query Sequence: 51055_RBD Length: (813 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54670 68416.t05608 structural maintenance of chromoso... 2278 2.7e-97 1 At1g07420 68414.t00709 sterol 4-alpha-methyl-oxidase 2 (S... 237 0.019 1 At1g05610 68414.t00521 glucose-1-phosphate adenylyltransf... 199 0.71 1 At3g07280 68416.t00783 expressed protein 193 0.91 1 >At3g54670 68416.t05608 structural maintenance of chromosomes (SMC) family protein similar to SMC1 protein [Bos taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC protein) [Xenopus laevis] GI:3328231; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 8099 Minus Strand HSPs: Score = 2278 (347.8 bits), Expect = 2.7e-97, P = 2.7e-97 Identities = 468/484 (96%), Positives = 468/484 (96%), Strand = Minus / Plus Query: 513 GNAANCCTCTGGAATTTCACTAANCTTTCTCCGNTTGAGTANCTTATATCTGTACCTTTC 454 | || |||||||||||||||||| ||||||| ||||||| |||||||||||||||||| Sbjct: 1430 GTAATCCTCTGGAATTTCACTAAACTTTCTCA-CTTGAGTAACTTATATCTGTACCTTTC 1488 Query: 453 CTGTGAGCAGCANACCTGAGCTTNTGAGATTTAAGGAGGAGATAGCTCGCATAAAAGCAA 394 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1489 CTGTGAGCAGCA-ACCTGAGCTTCTGAGATTTAAGGAGGAGATAGCTCGCATAAAAGCAA 1547 Query: 393 AAATTGAGNCCAATAGAAAGGNCGTGGATAAGAGGAAAAAAGAAAAAGGGAAGCATTCCA 334 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1548 AAATTGAGACCAATAGAAAGGACGTGGATAAGAGGAAAAAAGAAAAAGGGAAGCATTCCA 1607 Query: 333 AAGAAATTGAACAGATGCAGAAAAGCATTAAGGAGCTGAATAAGAAAATGGAATTATTTA 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1608 AAGAAATTGAACAGATGCAGAAAAGCATTAAGGAGCTGAATAAGAAAATGGAATTATTTA 1667 Query: 273 ATAAGAAGAGNCAAGATAGCAGCGGAAAACTCCCAATGCTTGACAGTCAACTGCAAGATT 214 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1668 ATAAGAAGAGACAAGATAGCAGCGGAAAACTCCCAATGCTTGACAGTCAACTGCAAGATT 1727 Query: 213 ATTTTCGACTGTAAGTTTGAAAGAAATAAGGATTTTTTTCTCTTCGCAAAAAAATTGCCG 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1728 ATTTTCGACTGTAAGTTTGAAAGAAATAAGGATTTTTTTCTCTTCGCAAAAAAATTGCCG 1787 Query: 153 TTTTCCAACTGTCCTGAGGTTATAGANATGCACCAACTTGATTTCTCTATATTGCCTATT 94 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1788 TTTTCCAACTGTCCTGAGGTTATAGATATGCACCAACTTGATTTCTCTATATTGCCTATT 1847 Query: 93 TAATCTTCTTGCTTGAGTTTTTGTGGTGTAATGAATACTACATGGGTTTACTATGTTTAG 34 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1848 TAATCTTCTTGCTTGAGTTTTTGTGGTGTAATGAATACTACATGGGTTTAC-ATGTTTAA 1906 Query: 33 CAGA 30 || | Sbjct: 1907 CAAA 1910 >At1g07420 68414.t00709 sterol 4-alpha-methyl-oxidase 2 (SMO2) identical to sterol 4-alpha-methyl-oxidase GI:16973471 from [Arabidopsis thaliana]; identical to cDNA sterol 4-alpha-methyl-oxidase GI:16973470 Length = 2491 Plus Strand HSPs: Score = 237 (41.6 bits), Expect = 0.019, P = 0.019 Identities = 171/299 (57%), Positives = 171/299 (57%), Strand = Plus / Plus